COVID-19 Viral Genome Analysis Pipeline
Enabled by data from
Relative Frequency Change By Geographical Region: Spike 614
Last update: Oct 24, 2020
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S 614 continent
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Africa Mar 13 0.857 21 Mar 27 0.968 2056 Sep 7 0.11 0.030401
Asia Jan 28 0.009 344 Feb 11 0.646 8004 Oct 7 0.64 0.000000
Europe Jan 29 0.250 16 Feb 12 0.898 69629 Oct 13 0.65 0.000000
North-America Feb 28 0.052 97 Mar 13 0.900 29008 Oct 7 0.85 0.000000
Oceania Mar 4 0.060 50 Mar 18 0.927 9159 Oct 14 0.87 0.000000
South-America Mar 4 0.611 18 Mar 18 0.972 1199 Sep 14 0.36 0.000001
S 614 country
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Australia Mar 6 0.071 56 Mar 20 0.945 8537 Oct 14 0.87 0.000000
Bangladesh May 10 0.909 33 May 24 0.996 254 Jul 31 0.09 0.005154
Brazil Mar 4 0.733 15 Mar 18 0.992 512 Aug 15 0.26 0.000028
Canada Mar 5 0.167 18 Mar 19 0.930 1841 Aug 29 0.76 0.000000
Chile Mar 10 0.450 20 Mar 24 0.983 60 Aug 26 0.53 0.000000
China Jan 28 0.011 272 Feb 11 0.229 275 Oct 7 0.22 0.000000
Colombia Mar 20 0.625 16 Apr 3 1.000 36 Jul 17 0.38 0.000393
DRC Mar 22 0.850 20 Apr 5 0.985 270 May 30 0.14 0.008271
Ecuador Apr 17 0.833 18 May 1 0.984 61 Sep 14 0.15 0.035165
Finland Mar 13 0.885 26 Mar 27 0.991 220 May 16 0.11 0.009157
France Feb 26 0.333 18 Mar 11 0.995 1012 Sep 16 0.66 0.000000
Germany Feb 27 0.667 15 Mar 12 0.912 272 Aug 28 0.25 0.010882
Hong-Kong Mar 13 0.021 141 Mar 27 0.913 172 Aug 17 0.89 0.000000
Iceland Mar 11 0.951 61 Mar 25 0.735 49 Mar 29 -0.22 0.002069
India Mar 10 0.429 21 Mar 24 0.788 2652 Sep 29 0.36 0.000370
Indonesia May 5 0.088 34 May 19 0.765 51 Sep 1 0.68 0.000000
Ireland Jul 4 0.833 18 Jul 18 1.000 158 Sep 16 0.17 0.000914
Israel Mar 15 0.800 35 Mar 29 0.962 183 Sep 1 0.16 0.002297
Italy Feb 22 0.500 16 Mar 7 1.000 290 Oct 1 0.50 0.000000
Japan Mar 9 0.027 183 Mar 23 0.943 246 Aug 15 0.92 0.000000
Kenya Apr 12 0.625 16 Apr 26 0.871 85 Jun 22 0.25 0.026581
Latvia Mar 25 0.800 25 Apr 8 1.000 104 Aug 26 0.20 0.000193
Lithuania Apr 8 0.200 20 Apr 22 1.000 15 Jun 3 0.80 0.000002
Mexico Mar 14 0.400 15 Mar 28 1.000 66 Aug 24 0.60 0.000000
Netherlands Mar 1 0.545 22 Mar 15 0.907 2054 Sep 28 0.36 0.000013
New-Zealand Mar 17 0.350 20 Mar 31 0.923 222 Oct 8 0.57 0.000000
Nigeria Apr 23 0.353 17 May 7 0.957 23 Jun 17 0.60 0.000052
Norway Mar 10 0.579 19 Mar 24 1.000 368 Sep 30 0.42 0.000000
Oman Mar 20 0.312 16 Apr 3 0.951 164 Jun 20 0.64 0.000000
Peru Mar 13 0.840 25 Mar 27 0.981 265 Aug 28 0.14 0.004079
Poland Mar 28 0.840 25 Apr 11 1.000 39 Sep 5 0.16 0.019909
Russia Mar 23 0.925 53 Apr 6 0.998 410 Sep 2 0.07 0.000708
Saudi-Arabia Mar 15 0.921 38 Mar 29 0.696 448 Aug 4 -0.22 0.002328
Senegal Mar 20 0.810 21 Apr 3 1.000 91 Jul 9 0.19 0.000964
South-Africa Mar 27 0.722 18 Apr 10 0.996 1052 Aug 25 0.27 0.000000
South-Korea Mar 16 0.017 177 Mar 30 0.977 613 Aug 11 0.96 0.000000
Spain Feb 29 0.278 18 Mar 14 0.801 967 Sep 20 0.52 0.000003
Sweden Mar 3 0.692 26 Mar 17 0.984 441 Sep 16 0.29 0.000000
Switzerland Mar 10 0.958 72 Mar 24 0.991 1287 Sep 10 0.03 0.034060
Thailand Mar 3 0.081 37 Mar 17 0.500 68 May 5 0.42 0.000012
Turkey Mar 19 0.440 25 Apr 2 0.953 86 Jun 6 0.51 0.000000
USA Feb 28 0.034 87 Mar 13 0.902 26694 Oct 7 0.87 0.000000
United-Arab-Emirates Mar 12 0.179 39 Mar 26 0.715 193 Sep 25 0.54 0.000000
UK Feb 24 0.115 26 Mar 9 0.901 54214 Oct 13 0.79 0.000000
S 614 subcountry
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Australia_NSW Mar 6 0.100 30 Mar 20 0.802 1015 Oct 14 0.70 0.000000
Australia_Queensland Mar 19 0.400 15 Apr 2 0.909 33 Aug 30 0.51 0.000415
Australia_South-Australia Mar 15 0.235 17 Mar 29 0.814 86 Aug 15 0.58 0.000007
Australia_Victoria Mar 10 0.130 23 Mar 24 0.989 6901 Oct 5 0.86 0.000000
Australia_Western-Australia Mar 20 0.300 20 Apr 3 0.864 44 Jul 15 0.56 0.000015
Austria_Vienna Mar 16 0.948 58 Mar 30 0.733 15 Apr 7 -0.21 0.029079
Bangladesh_Chittagong Jun 16 0.647 17 Jun 30 1.000 42 Jul 24 0.35 0.000275
Belgium_Liege Mar 15 0.650 20 Mar 29 0.963 294 Sep 24 0.31 0.000029
Brazil_Rio-de-Janeiro Apr 2 0.867 30 Apr 16 1.000 113 Jul 20 0.13 0.001641
Brazil_Sao-Paulo Mar 9 0.800 15 Mar 23 1.000 169 Aug 15 0.20 0.000445
Canada_Manitoba Mar 18 0.562 16 Apr 1 0.954 175 Aug 10 0.39 0.000031
Canada_Nova-Scotia Mar 19 0.750 16 Apr 2 1.000 170 Apr 28 0.25 0.000038
Canada_Ontario Mar 16 0.667 27 Mar 30 0.979 434 Aug 29 0.31 0.000000
Canada_Ontario_Toronto Mar 16 0.750 24 Mar 30 0.975 200 Aug 29 0.22 0.000262
Canada_Quebec Mar 11 0.600 15 Mar 25 0.951 369 Apr 19 0.35 0.000108
Chile_Santiago Mar 10 0.471 17 Mar 24 0.972 36 Aug 26 0.50 0.000046
France_Auvergne-Rhone-Alpes Mar 11 0.919 37 Mar 25 1.000 104 Sep 16 0.08 0.016991
France_Ile-de-France Mar 11 0.500 18 Mar 25 1.000 23 Jul 19 0.50 0.000139
France_Provence-Alpes-Cote-d-Azur Mar 18 0.923 39 Apr 1 1.000 368 Sep 12 0.08 0.000819
Germany_North-Rhine-Westphalia Mar 11 0.222 18 Mar 25 0.961 77 Aug 28 0.74 0.000000
Iceland_Reykjavik Mar 11 0.951 61 Mar 25 0.735 49 Mar 29 -0.22 0.002069
India_Delhi Mar 30 0.733 15 Apr 13 0.160 169 Aug 25 -0.57 0.000006
India_Gujarat Apr 26 0.867 30 May 10 0.963 463 Sep 3 0.10 0.032279
India_Haryana May 28 0.176 17 Jun 11 0.972 36 Aug 27 0.80 0.000000
India_Karnataka Apr 21 0.200 15 May 5 0.781 105 Jun 21 0.58 0.000019
India_Maharashtra Mar 23 0.400 15 Apr 6 0.955 447 Sep 29 0.56 0.000000
India_Telangana Mar 31 0.176 17 Apr 14 0.943 490 Aug 19 0.77 0.000000
India_Telangana_Hyderabad Apr 15 0.200 15 Apr 29 0.960 201 Jun 13 0.76 0.000000
India_Uttar-Pradesh Apr 2 0.467 15 Apr 16 0.853 34 Jun 27 0.39 0.011308
India_West-Bengal Mar 31 0.625 16 Apr 14 0.901 182 Sep 10 0.28 0.005955
Japan_Kanto Mar 9 0.083 36 Mar 23 0.954 87 May 14 0.87 0.000000
Netherlands_Gelderland Mar 15 0.733 15 Mar 29 0.987 235 Sep 19 0.25 0.000270
Netherlands_Limburg Mar 21 0.588 17 Apr 4 0.966 87 Sep 25 0.38 0.000083
Netherlands_Noord-Brabant Mar 5 0.471 17 Mar 19 0.805 257 Sep 15 0.33 0.003260
Netherlands_Noord-Holland Apr 1 0.750 20 Apr 15 1.000 56 Sep 16 0.25 0.000839
Netherlands_Zuid-Holland Mar 6 0.778 18 Mar 20 0.977 485 Sep 28 0.20 0.001234
New-Zealand_Auckland Mar 20 0.350 20 Apr 3 0.970 67 Oct 8 0.62 0.000000
New-Zealand_Canterbury Mar 24 0.647 17 Apr 7 1.000 25 Sep 21 0.35 0.002359
Norway_Oslo Jul 24 0.667 15 Aug 7 1.000 27 Sep 27 0.33 0.003530
Oman_Muscat Mar 20 0.333 15 Apr 3 0.952 124 Jun 20 0.62 0.000000
Peru_Lima Mar 16 0.833 18 Mar 30 0.986 143 Aug 28 0.15 0.010312
Senegal_Dakar Apr 2 0.800 15 Apr 16 1.000 87 Jul 9 0.20 0.002650
South-Africa_KZN Jun 17 0.977 129 Jul 1 1.000 641 Aug 25 0.02 0.004611
Spain_Andalucia Mar 12 0.136 22 Mar 26 0.704 27 Jul 14 0.57 0.000119
Spain_Basque-Country Mar 5 0.188 16 Mar 19 0.946 147 Sep 20 0.76 0.000000
Spain_Basque-Country_San-Sebastian Mar 28 0.647 17 Apr 11 1.000 86 Sep 20 0.35 0.000009
Spain_Com-Valenciana Mar 9 0.111 27 Mar 23 0.880 133 Jul 9 0.77 0.000000
Spain_Com-Valenciana_Castellon-de-la-Plana Mar 16 0.688 16 Mar 30 1.000 20 Jul 9 0.31 0.011586
Spain_Com-Valenciana_Valencia Mar 10 0.108 37 Mar 24 0.629 35 Apr 1 0.52 0.000005
Spain_Galicia Mar 11 0.438 16 Mar 25 0.944 18 Jul 21 0.51 0.001965
Spain_La-Rioja Mar 11 0.123 57 Mar 25 0.810 21 Apr 4 0.69 0.000000
Spain_La-Rioja_Logrono Mar 11 0.121 33 Mar 25 0.778 18 Apr 4 0.66 0.000005
Spain_Madrid Mar 6 0.500 16 Mar 20 0.841 220 Aug 24 0.34 0.002705
Sweden_Halland Mar 10 0.750 16 Mar 24 0.966 29 Aug 20 0.22 0.046775
Sweden_Stockholm Mar 3 0.773 22 Mar 17 1.000 72 Aug 14 0.23 0.000480
Sweden_Vastra-Gotaland Mar 25 0.529 17 Apr 8 1.000 66 Sep 3 0.47 0.000001
Switzerland_Basel-Land Mar 13 0.909 33 Mar 27 0.995 200 Sep 10 0.09 0.009461
Switzerland_Graubunden Mar 25 0.667 15 Apr 8 1.000 30 Sep 8 0.33 0.002458
Switzerland_Zurich Mar 11 0.842 19 Mar 25 1.000 249 Sep 10 0.16 0.000305
USA_Alaska Mar 23 0.600 15 Apr 6 0.992 130 Jul 24 0.39 0.000003
USA_CA Mar 4 0.097 31 Mar 18 0.892 3256 Sep 22 0.79 0.000000
USA_CA_Alameda Apr 12 0.222 18 Apr 26 1.000 162 Jul 17 0.78 0.000000
USA_CA_Humboldt Apr 1 0.810 21 Apr 15 0.992 131 Sep 8 0.18 0.001271
USA_CA_Los-Angeles Mar 17 0.600 15 Mar 31 0.925 186 Sep 2 0.32 0.001280
USA_CA_San-Diego Mar 12 0.353 17 Mar 26 0.985 678 Sep 2 0.63 0.000000
USA_CA_San-Joaquin Mar 26 0.235 17 Apr 9 0.838 68 Jul 10 0.60 0.000004
USA_CA_Santa-Clara Mar 12 0.103 29 Mar 26 0.645 349 Sep 16 0.54 0.000000
USA_CA_Santa-Clara_PHD Mar 12 0.107 28 Mar 26 0.646 339 Sep 16 0.54 0.000000
USA_CA_Ventura Apr 1 0.812 16 Apr 15 1.000 52 Jun 28 0.19 0.011174
USA_Colorado Mar 18 0.611 18 Apr 1 1.000 89 Jun 29 0.39 0.000001
USA_Connecticut Mar 14 0.879 33 Mar 28 0.966 234 Aug 17 0.09 0.046888
USA_Florida Mar 9 0.533 15 Mar 23 0.942 873 Sep 16 0.41 0.000015
USA_Georgia Mar 13 0.250 20 Mar 27 0.962 53 Sep 19 0.71 0.000000
USA_Houston Apr 1 0.857 28 Apr 15 0.990 2402 Jul 7 0.13 0.000239
USA_Illinois Mar 14 0.400 20 Mar 28 0.956 91 Sep 16 0.56 0.000000
USA_Illinois_Winnebago Apr 14 0.812 16 Apr 28 1.000 34 Sep 16 0.19 0.028571
USA_Louisiana Mar 17 0.875 24 Mar 31 0.999 1221 Aug 26 0.12 0.000025
USA_Michigan Mar 13 0.932 44 Mar 27 0.993 1064 Oct 7 0.06 0.005773
USA_Minnesota Mar 11 0.353 17 Mar 25 0.857 865 Sep 16 0.50 0.000004
USA_Nevada Mar 15 0.200 15 Mar 29 0.991 106 Jun 2 0.79 0.000000
USA_New-Mexico Mar 20 0.857 21 Apr 3 0.988 335 Sep 4 0.13 0.005342
USA_NY Mar 4 0.714 21 Mar 18 0.954 1056 Sep 9 0.24 0.000404
USA_Oregon Mar 23 0.227 22 Apr 6 0.952 517 Aug 13 0.72 0.000000
USA_Oregon_WA Apr 17 0.667 15 May 1 0.994 156 Jul 30 0.33 0.000015
USA_Puerto-Rico Jun 30 0.800 15 Jul 14 1.000 24 Aug 12 0.20 0.049787
USA_South-Carolina Mar 26 0.167 18 Apr 9 0.966 176 Jul 21 0.80 0.000000
USA_Texas Mar 13 0.700 20 Mar 27 0.952 598 Sep 10 0.25 0.000465
USA_Utah Mar 12 0.588 17 Mar 26 0.983 1718 Aug 14 0.39 0.000000
USA_Virginia Mar 11 0.550 20 Mar 25 0.974 998 Sep 3 0.42 0.000000
USA_WA Mar 8 0.015 204 Mar 22 0.831 3972 Oct 4 0.82 0.000000
USA_WA_King Mar 8 0.029 103 Mar 22 0.866 238 Sep 18 0.84 0.000000
USA_WA_Pierce Apr 8 0.250 44 Apr 22 0.988 83 Jun 23 0.74 0.000000
USA_WA_Snohomish Mar 28 0.108 37 Apr 11 0.935 124 Jun 20 0.83 0.000000
USA_WA_Yakima Mar 25 0.375 32 Apr 8 0.829 1460 Jun 23 0.45 0.000000
USA_WI Mar 15 0.720 25 Mar 29 0.942 1440 Sep 16 0.22 0.000507
USA_WI_Dane Mar 20 0.706 17 Apr 3 0.993 668 Sep 16 0.29 0.000001
USA_WI_Milwaukee Mar 19 0.389 18 Apr 2 0.698 116 Aug 30 0.31 0.015371
USA_WI_Ozaukee Mar 27 0.176 17 Apr 10 1.000 15 Jun 27 0.82 0.000001
USA_Wyoming Mar 20 0.733 15 Apr 3 1.000 21 Aug 30 0.27 0.023173
UK_England Feb 24 0.115 26 Mar 9 0.913 40650 Oct 13 0.80 0.000000
UK_England_ALDP May 5 0.916 107 May 19 0.997 8719 Oct 6 0.08 0.000000
UK_England_BIRM Mar 25 0.533 15 Apr 8 0.976 209 Sep 4 0.44 0.000001
UK_England_Cambridge Mar 4 0.667 21 Mar 18 0.845 4780 Oct 8 0.18 0.034102
UK_England_CWAR Apr 23 0.812 16 May 7 1.000 50 Jun 20 0.19 0.012238
UK_England_Exeter Mar 26 0.588 17 Apr 9 0.894 142 Jun 17 0.31 0.002961
UK_England_GSTT Mar 14 0.136 22 Mar 28 0.620 100 Mar 31 0.48 0.000036
UK_England_London Mar 13 0.625 16 Mar 27 0.879 780 Sep 24 0.25 0.009460
UK_England_MILK May 8 0.917 36 May 22 0.997 4788 Oct 1 0.08 0.000242
UK_England_Northampton Mar 12 0.600 20 Mar 26 0.852 1261 Oct 4 0.25 0.005875
UK_England_Norwich Apr 8 0.774 31 Apr 22 0.936 392 Oct 5 0.16 0.005200
UK_England_Nottingham Mar 14 0.143 21 Mar 28 0.851 937 Oct 13 0.71 0.000000
UK_England_Oxford Mar 20 0.650 20 Apr 3 0.945 562 Jun 7 0.29 0.000120
UK_England_Portsmouth Mar 20 0.286 21 Apr 3 0.921 215 Sep 18 0.64 0.000000
UK_England_QEUH Jul 31 0.996 767 Aug 14 0.999 4722 Oct 2 0.00 0.039167
UK_England_Sheffield Mar 18 0.500 18 Apr 1 0.967 1043 Oct 4 0.47 0.000000
UK_Northern-Ireland Mar 17 0.250 16 Mar 31 0.974 1207 Sep 25 0.72 0.000000
UK_Wales Mar 12 0.562 16 Mar 26 0.907 5939 Oct 10 0.34 0.000344
last modified: Mon Jul 20 12:16 2020
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