COVID-19 Viral Genome Analysis Pipeline COVID-19 Viral Genome Analysis Pipeline home COVID-19 Viral Genome Analysis Pipeline home
COVID-19 Viral Genome Analysis Pipeline
Enabled by data from   gisaid-logo


Relative Frequency Change By Geographical Region

Last update: Mar 4, 2021

Spike 501

Go to the tool and explanation
Download: Plots and data


Continent

                           Onset    |--Before-|   Delay   |--After--|   Last    Delta   Fisher
                  Location  Date     Y/(Y+N) Y+N   Date    Y/(Y+N) Y+N   Sample  Y/(Y+N)  p-val
                    Africa  Oct 14   0.001  3764   Oct 28  0.249  1315   Feb 13   0.25 0.000000
                      Asia  Nov 24   0.000 16382   Dec  8  0.224  2931   Feb 24   0.22 0.000000
                    Europe  Sep  4   0.000 70437   Sep 18  0.385 265434   Feb 25   0.38 0.000000
             North-America  Aug 16   0.000 49476   Aug 30  0.025 67553   Feb 25   0.03 0.000000
                   Oceania  Jun 12   0.002  2602   Jun 26  0.016  8907   Feb 25   0.01 0.000000
             South-America  Dec 17   0.001  4384   Dec 31  0.310   623   Feb 16   0.31 0.000000



Country

                           Onset    |--Before-|   Delay   |--After--|   Last    Delta   Fisher
                  Location  Date     Y/(Y+N) Y+N   Date    Y/(Y+N) Y+N   Sample  Y/(Y+N)  p-val
                 Australia  Jun 12   0.002  2240   Jun 26  0.011  8639   Feb 25   0.01 0.000008
                   Austria  Dec 30   0.005  1185   Jan 13  0.661   115   Feb  2   0.66 0.000000
                   Belgium  Nov 30   0.001  2499   Dec 14  0.436  3763   Feb 25   0.44 0.000000
                    Brazil  Dec 17   0.003  1905   Dec 31  0.580   274   Feb 11   0.58 0.000000
                    Canada  Nov 27   0.000 11161   Dec 11  0.037  1185   Jan 29   0.04 0.000000
                   Denmark  Nov  9   0.000 11968   Nov 23  0.101 31660   Feb 15   0.10 0.000000
                   Finland  Dec 19   0.004  1026   Jan  2  0.511   442   Feb  6   0.51 0.000000
                    France  Dec 21   0.001  3633   Jan  4  0.546  1809   Feb 22   0.54 0.000000
                   Germany  Dec 12   0.001  3101   Dec 26  0.178   589   Feb 16   0.18 0.000000
                     Ghana  Dec 22   0.083    36   Jan  5  0.639    72   Jan 14   0.56 0.000000
                 Hong-Kong  Dec 10   0.003   921   Dec 24  0.094    32   Jan  3   0.09 0.000644
                   Iceland  Dec 20   0.001  3210   Jan  3  0.156    32   Jan  6   0.16 0.000000
                     India  Dec 22   0.001  4480   Jan  5  0.075    67   Jan 31   0.07 0.000000
                   Ireland  Dec 18   0.003  1343   Jan  1  0.737  1408   Feb 11   0.73 0.000000
                    Israel  Dec 20   0.008   397   Jan  3  0.499   505   Jan 25   0.49 0.000000
                     Italy  Dec 18   0.003  2388   Jan  1  0.563  1706   Feb 23   0.56 0.000000
                     Japan  Jan  2   0.004   944   Jan 16  0.242    33   Feb 13   0.24 0.000000
                     Kenya  Nov  9   0.014   288   Nov 23  0.062    64   Jan 28   0.05 0.039234
                Luxembourg  Dec 29   0.001  2839   Jan 12  0.195    77   Jan 20   0.19 0.000000
                   Mayotte  Jan 12   0.078    77   Jan 26  0.278    54   Jan 31   0.20 0.003209
               Netherlands  Dec  9   0.001  4372   Dec 23  0.276  4509   Feb 16   0.28 0.000000
               New-Zealand  Dec 20   0.007   554   Jan  3  0.641    39   Feb 23   0.63 0.000000
                   Nigeria  Dec 29   0.020   197   Jan 12  0.533    15   Jan 19   0.51 0.000000
           North-Macedonia  Jan  9   0.016   187   Jan 23  0.160    25   Feb  1   0.14 0.004204
                    Norway  Dec 13   0.003  1048   Dec 27  0.265   313   Feb 17   0.26 0.000000
                    Poland  Jan 12   0.008   393   Jan 26  0.341   270   Feb 23   0.33 0.000000
                  Portugal  Dec 15   0.002  1734   Dec 29  0.206   588   Feb 10   0.20 0.000000
                   Romania  Jan 13   0.020   196   Jan 27  0.955    22   Feb  3   0.93 0.000000
                 Singapore  Dec 19   0.002  1476   Jan  2  0.252   214   Feb 24   0.25 0.000000
                  Slovakia  Dec 22   0.053    76   Jan  5  0.732    82   Feb 18   0.68 0.000000
              South-Africa  Oct 20   0.002  1833   Nov  3  0.518   222   Jan 19   0.52 0.000000
               South-Korea  Dec 22   0.002  2023   Jan  5  0.078   205   Feb 13   0.08 0.000000
                     Spain  Nov  8   0.002  2508   Nov 22  0.415  1818   Feb 16   0.41 0.000000
                    Sweden  Dec 22   0.002  1353   Jan  5  0.355   670   Feb 21   0.35 0.000000
               Switzerland  Dec 18   0.001  4170   Jan  1  0.168  5077   Feb 18   0.17 0.000000
                    Turkey  Dec 28   0.012   329   Jan 11  0.802   980   Feb 22   0.79 0.000000
                       USA  Aug 16   0.000 42084   Aug 30  0.027 61083   Feb 25   0.03 0.000000
      United-Arab-Emirates  Nov 24   0.002  1764   Dec  8  0.397    63   Jan 20   0.40 0.000000
                        UK  Sep  4   0.000 44730   Sep 18  0.507 175304   Feb 21   0.51 0.000000
                    Zambia  Dec  1   0.018   164   Dec 15  0.931    29   Jan 18   0.91 0.000000



Subcountry

                           Onset    |--Before-|   Delay   |--After--|   Last    Delta   Fisher
                  Location  Date     Y/(Y+N) Y+N   Date    Y/(Y+N) Y+N   Sample  Y/(Y+N)  p-val
             Australia_NSW  Dec  9   0.003  1448   Dec 23  0.237    97   Feb 25   0.23 0.000000
           Belgium_Antwerp  Dec 28   0.066    61   Jan 11  0.721   179   Feb 23   0.66 0.000000
         Belgium_Antwerpen  Dec 28   0.154    26   Jan 11  0.858   106   Feb 18   0.70 0.000000
          Belgium_Brussels  Jan  3   0.089    45   Jan 17  0.592    98   Feb 18   0.50 0.000000
             Belgium_Ghent  Jan  8   0.025   200   Jan 22  0.277    47   Feb  1   0.25 0.000000
           Belgium_Hasselt  Jan 16   0.125    24   Jan 30  0.451    91   Feb 23   0.33 0.004032
         Belgium_Houthalen  Jan 16   0.167    18   Jan 30  0.611    18   Feb 24   0.44 0.015260
            Belgium_Leuven  Nov 30   0.062    48   Dec 14  0.417    48   Feb 20   0.35 0.000074
             Belgium_Liege  Jan 14   0.003  1109   Jan 28  0.583   264   Feb 21   0.58 0.000000
           Brazil_Amazonas  Dec 17   0.033   183   Dec 31  0.921    63   Jan 29   0.89 0.000000
    Brazil_Amazonas_Manaus  Dec 18   0.034   118   Jan  1  0.918    49   Jan 29   0.88 0.000000
          Brazil_Sao-Paulo  Jan  4   0.005   587   Jan 18  0.482    83   Feb 11   0.48 0.000000
   Canada_British-Columbia  Nov 27   0.001  3974   Dec 11  0.006   508   Jan 29   0.01 0.022261
       Denmark_Hovedstaden  Nov  9   0.001  4715   Nov 23  0.086 14059   Feb 15   0.09 0.000000
       Denmark_Midtjylland  Dec 21   0.002  4515   Jan  4  0.241  1666   Feb 15   0.24 0.000000
       Denmark_Nordjylland  Nov 30   0.002  1860   Dec 14  0.059  2162   Feb 15   0.06 0.000000
         Denmark_Sjaelland  Dec 14   0.001  2444   Dec 28  0.200  2958   Feb 15   0.20 0.000000
        Denmark_Syddanmark  Dec 14   0.002  3541   Dec 28  0.241  2932   Feb 15   0.24 0.000000
           Finland_Uusimaa  Dec 19   0.004   991   Jan  2  0.512   441   Jan 26   0.51 0.000000
           France_Bretagne  Jan  2   0.015   205   Jan 16  0.340    53   Feb 15   0.32 0.000000
             France_Centre  Jan 13   0.104    48   Jan 27  0.382    34   Feb 15   0.28 0.005659
                France_HdF  Dec 26   0.035    86   Jan  9  0.500    92   Feb 16   0.47 0.000000
      France_Ile-de-France  Dec 23   0.004   844   Jan  6  0.806   485   Feb 16   0.80 0.000000
 France_Ile-de-France_PARIS  Jan  4   0.071    42   Jan 18  0.739   134   Feb 15   0.67 0.000000
 France_Ile-de-France_Paris  Jan  4   0.071    42   Jan 18  0.739   134   Feb 15   0.67 0.000000
          France_Occitanie  Dec 29   0.009   349   Jan 12  1.000    19   Jan 18   0.99 0.000000
 France_Occitanie_Toulouse  Dec 29   0.049    61   Jan 12  1.000    19   Jan 18   0.95 0.000000
 France_Provence-Alpes-Cote-d-Azur  Dec 23   0.003   883   Jan  6  0.609    69   Feb 11   0.61 0.000000
            Germany_Saxony  Jan 22   0.021   142   Feb  5  0.180    61   Feb 16   0.16 0.000146
     Germany_Saxony-Anhalt  Jan 25   0.029   105   Feb  8  0.157    51   Feb 16   0.13 0.005907
         Iceland_Reykjavik  Dec 20   0.001  3210   Jan  3  0.156    32   Jan  6   0.16 0.000000
           India_Karnataka  Dec 25   0.019   215   Jan  8  0.093    43   Jan 31   0.07 0.028424
             Ireland_Cavan  Dec 27   0.073    41   Jan 10  1.000    25   Feb  8   0.93 0.000000
              Ireland_Cork  Dec 27   0.048    63   Jan 10  0.456    79   Feb  3   0.41 0.000000
           Ireland_Donegal  Jan 11   0.125    24   Jan 25  0.833    36   Feb  3   0.71 0.000000
            Ireland_Dublin  Dec 20   0.010   497   Jan  3  0.763   438   Feb 11   0.75 0.000000
            Ireland_Galway  Jan 10   0.128    39   Jan 24  0.800    55   Feb  3   0.67 0.000000
             Ireland_Kerry  Dec 21   0.054    56   Jan  4  0.784    37   Feb  3   0.73 0.000000
           Ireland_Kildare  Jan  7   0.045    66   Jan 21  0.706    68   Feb  3   0.66 0.000000
             Ireland_Louth  Dec 27   0.039   103   Jan 10  0.655    58   Feb 10   0.62 0.000000
             Ireland_Meath  Jan  8   0.062    48   Jan 22  0.932    73   Feb 10   0.87 0.000000
           Ireland_Wexford  Dec 21   0.143    21   Jan  4  0.902    41   Feb  2   0.76 0.000000
           Ireland_Wicklow  Dec 31   0.044    91   Jan 14  0.667    36   Feb  3   0.62 0.000000
          Israel_Jerusalem  Dec 28   0.094   128   Jan 11  0.750    16   Jan 25   0.66 0.000000
           Israel_Tel-Aviv  Dec 28   0.033    91   Jan 11  0.579    19   Jan 25   0.55 0.000000
             Italy_Abruzzo  Dec 18   0.022   184   Jan  1  0.844   392   Feb 19   0.82 0.000000
              Italy_Apulia  Dec 21   0.009   333   Jan  4  0.806    67   Feb  5   0.80 0.000000
         Italy_Apulia_Bari  Dec 24   0.023   130   Jan  7  0.968    31   Feb  4   0.94 0.000000
            Italy_Campania  Dec 21   0.007  1119   Jan  4  0.489   792   Feb 23   0.48 0.000000
               Italy_Lazio  Dec 25   0.031   130   Jan  8  0.296    98   Feb 22   0.27 0.000000
         Mayotte_MAMOUDZOU  Jan 12   0.078    77   Jan 26  0.278    54   Jan 31   0.20 0.003209
         Mayotte_Mamoudzou  Jan 12   0.078    77   Jan 26  0.278    54   Jan 31   0.20 0.003209
     Netherlands_Friesland  Jan  3   0.032   155   Jan 17  0.514   105   Feb  8   0.48 0.000000
    Netherlands_Gelderland  Dec 24   0.005   568   Jan  7  0.224   304   Feb 14   0.22 0.000000
     Netherlands_Groningen  Dec 28   0.039    76   Jan 11  0.151    93   Feb 12   0.11 0.020150
       Netherlands_Limburg  Dec 28   0.006   529   Jan 11  0.160   194   Feb 12   0.15 0.000000
 Netherlands_Noord-Brabant  Dec 30   0.004   702   Jan 13  0.383   559   Feb 14   0.38 0.000000
 Netherlands_Noord-Holland  Dec 13   0.009   316   Dec 27  0.460   569   Feb 14   0.45 0.000000
    Netherlands_Overijssel  Jan  7   0.011   283   Jan 21  0.274   113   Feb 14   0.26 0.000000
       Netherlands_Utrecht  Dec 18   0.006   474   Jan  1  0.208   842   Feb 16   0.20 0.000000
       Netherlands_Zeeland  Dec 29   0.041    73   Jan 12  0.557   192   Feb 12   0.52 0.000000
  Netherlands_Zuid-Holland  Dec 13   0.003  1034   Dec 27  0.311   508   Feb 10   0.31 0.000000
  Netherlands_Zuid-holland  Dec 13   0.003  1034   Dec 27  0.311   508   Feb 10   0.31 0.000000
 New-Zealand_Counties-Manukau  Jan  1   0.058    52   Jan 15  0.875    16   Feb 23   0.82 0.000000
               Norway_Oslo  Dec 17   0.026   192   Dec 31  0.295    61   Feb 12   0.27 0.000000
           Norway_Vestland  Dec 22   0.070    71   Jan  5  0.706    17   Feb 12   0.64 0.000000
              Norway_Viken  Dec 24   0.011   274   Jan  7  0.287    87   Feb 17   0.28 0.000000
          Poland_Pomorskie  Jan 13   0.038    79   Jan 27  0.630    81   Feb 23   0.59 0.000000
       Slovakia_Bratislava  Jan 11   0.188    32   Jan 25  0.850    20   Feb 18   0.66 0.000003
 South-Africa_Eastern-Cape  Nov  4   0.176    17   Nov 18  1.000    37   Dec  9   0.82 0.000000
 South-Africa_Western-Cape  Oct 22   0.013   318   Nov  5  0.593    59   Jan 11   0.58 0.000000
            Spain_Asturias  Jan  3   0.040    75   Jan 17  0.577    71   Feb 13   0.54 0.000000
 Spain_Balear-Islands_Palma-de-Mallorca  Dec 30   0.034    88   Jan 13  0.500    82   Feb 12   0.47 0.000000
  Spain_Castilla-La-Mancha  Dec 21   0.120    25   Jan  4  0.625    16   Feb  2   0.51 0.001417
     Spain_Castilla-y-Leon  Dec 29   0.083    36   Jan 12  0.718    71   Jan 29   0.63 0.000000
           Spain_Catalunya  Jan  9   0.015   456   Jan 23  0.311   373   Feb 16   0.30 0.000000
  Spain_Catalunya_Badalona  Jan 15   0.029   103   Jan 29  0.394    33   Feb  3   0.36 0.000000
      Spain_Com-Valenciana  Nov  8   0.010   418   Nov 22  0.448    58   Jan 30   0.44 0.000000
 Spain_Com-Valenciana_Valencia  Nov  8   0.019   214   Nov 22  0.800    15   Jan 18   0.78 0.000000
             Spain_Galicia  Dec 26   0.060    84   Jan  9  0.667    18   Feb  1   0.61 0.000000
              Spain_Madrid  Dec 14   0.004   742   Dec 28  0.535    99   Feb  1   0.53 0.000000
       Spain_Madrid_Madrid  Dec 14   0.007   410   Dec 28  0.539    89   Jan 21   0.53 0.000000
             Spain_Navarra  Dec 30   0.075    40   Jan 13  0.583    60   Jan 26   0.51 0.000000
              Sweden_Skane  Jan 24   0.030   101   Feb  7  0.190    42   Feb 18   0.16 0.002556
          Sweden_Stockholm  Dec 23   0.009   330   Jan  6  0.408    49   Feb 10   0.40 0.000000
       Sweden_Vasterbotten  Jan 25   0.089    56   Feb  8  0.867    98   Feb 21   0.78 0.000000
          Switzerland_Bern  Dec 30   0.004   765   Jan 13  0.051   176   Feb 11   0.05 0.000031
        Switzerland_Geneva  Dec 26   0.022   137   Jan  9  0.484   890   Feb 18   0.46 0.000000
        Switzerland_Geneve  Jan  3   0.091    44   Jan 17  0.343   254   Jan 28   0.25 0.000594
        Switzerland_Valais  Jan 18   0.029   204   Feb  1  0.468    47   Feb 17   0.44 0.000000
          Switzerland_Vaud  Dec 24   0.007   413   Jan  7  0.217   152   Feb 15   0.21 0.000000
        Switzerland_Wallis  Jan 12   0.222    18   Jan 26  0.551    49   Feb  7   0.33 0.026041
        Switzerland_Zurich  Dec 28   0.005   642   Jan 11  0.073   478   Feb 11   0.07 0.000000
               USA_Arizona  Jan  7   0.001  3284   Jan 21  0.023   345   Feb 13   0.02 0.000002
                    USA_CA  Dec  4   0.000  8663   Dec 18  0.044  3780   Feb 19   0.04 0.000000
        USA_CA_Los-Angeles  Jan 20   0.002  1329   Feb  3  0.200    20   Feb 19   0.20 0.000001
          USA_CA_San-Diego  Dec 29   0.002  2559   Jan 12  0.025   360   Jan 30   0.02 0.000003
              USA_Colorado  Jan  4   0.005   586   Jan 18  0.096   291   Feb 12   0.09 0.000000
           USA_Connecticut  Jan  6   0.004   676   Jan 20  0.077    78   Feb  8   0.07 0.000067
               USA_Florida  Dec 26   0.003  2007   Jan  9  0.200  1059   Feb 18   0.20 0.000000
               USA_Georgia  Dec 29   0.006   545   Jan 12  0.059   424   Feb  9   0.05 0.000001
              USA_Illinois  Jan  2   0.003  1010   Jan 16  0.171   240   Feb  8   0.17 0.000000
               USA_Indiana  Jan  4   0.008   378   Jan 18  0.056   160   Feb 11   0.05 0.001400
              USA_Kentucky  Jan  3   0.023   176   Jan 17  0.079    89   Feb  8   0.06 0.046954
             USA_Louisiana  Nov 27   0.002  1937   Dec 11  0.025   790   Feb  9   0.02 0.000000
              USA_Maryland  Jan 12   0.002  1216   Jan 26  0.157   426   Feb 24   0.15 0.000000
         USA_Massachusetts  Aug 31   0.003  1188   Sep 14  0.022  1288   Feb  9   0.02 0.000006
              USA_Michigan  Jan 11   0.002  3785   Jan 25  0.218   565   Feb 12   0.22 0.000000
             USA_Minnesota  Dec 28   0.001  2010   Jan 11  0.059   101   Feb  9   0.06 0.000001
            USA_New-Jersey  Jan  3   0.029   238   Jan 17  0.109   220   Feb 10   0.08 0.000695
                    USA_NY  Dec 22   0.001  5570   Jan  5  0.073  3890   Feb 23   0.07 0.000000
                 USA_NY_NY  Jan  4   0.002  2031   Jan 18  0.098  2276   Feb 23   0.10 0.000000
            USA_NY_NY-City  Jan 13   0.002  1483   Jan 27  0.107  1807   Feb 23   0.11 0.000000
                  USA_Ohio  Jan  6   0.010   395   Jan 20  0.081   210   Feb 22   0.07 0.000013
          USA_Pennsylvania  Jan 10   0.005   591   Jan 24  0.083   218   Feb 10   0.08 0.000000
                 USA_Texas  Nov 20   0.000  9751   Dec  4  0.024  5014   Feb  9   0.02 0.000000
                  USA_Utah  Jan 12   0.001  4372   Jan 26  0.018    56   Feb  4   0.02 0.049652
              USA_Virginia  Jan 25   0.002  2321   Feb  8  0.174    23   Feb 19   0.17 0.000000
                    USA_WA  Jan 16   0.000  6429   Jan 30  0.025   159   Feb 25   0.02 0.000011
               USA_WA_King  Jan 19   0.003   985   Feb  2  0.051    39   Feb 10   0.05 0.013150
               USA_Wyoming  Dec 28   0.006   544   Jan 11  0.034   536   Feb 16   0.03 0.000710
 United-Arab-Emirates_Abu-Dhabi  Nov 24   0.002  1551   Dec  8  0.397    63   Jan 20   0.39 0.000000
                UK_England  Sep 20   0.000 37689   Oct  4  0.566 144502   Feb 21   0.57 0.000000
           UK_England_ALDP  Nov  5   0.000 15587   Nov 19  0.743 31415   Feb 19   0.74 0.000000
           UK_England_BIRM  Dec 11   0.004   700   Dec 25  0.830   400   Feb 17   0.83 0.000000
        UK_England_Bristol  Dec 19   0.001  3045   Jan  2  0.857    42   Jan 31   0.86 0.000000
      UK_England_Cambridge  Nov 16   0.001  5703   Nov 30  0.740  1320   Feb 16   0.74 0.000000
           UK_England_CAMC  Oct  8   0.002  1720   Oct 22  0.694 22848   Feb 18   0.69 0.000000
         UK_England_Exeter  Dec 21   0.005   564   Jan  4  0.857    63   Feb  7   0.85 0.000000
      UK_England_Liverpool  Dec 12   0.001  2025   Dec 26  0.611   175   Feb  9   0.61 0.000000
         UK_England_London  Nov 10   0.003  1362   Nov 24  0.832  4132   Feb 18   0.83 0.000000
           UK_England_MILK  Sep 30   0.001  5409   Oct 14  0.662 28691   Feb 17   0.66 0.000000
    UK_England_Northampton  Dec  3   0.002  1929   Dec 17  0.613  1420   Feb 11   0.61 0.000000
        UK_England_Norwich  Nov 13   0.005   807   Nov 27  0.589  1394   Feb 12   0.58 0.000000
     UK_England_Nottingham  Dec 10   0.002  1715   Dec 24  0.612   536   Feb 16   0.61 0.000000
         UK_England_Oxford  Dec  4   0.004   734   Dec 18  0.808  1502   Feb  2   0.80 0.000000
     UK_England_Portsmouth  Nov 26   0.006   524   Dec 10  0.837   980   Feb 14   0.83 0.000000
           UK_England_QEUH  Oct 30   0.000 11897   Nov 13  0.621 14586   Feb 21   0.62 0.000000
      UK_England_Sheffield  Dec 11   0.002  1929   Dec 25  0.638   991   Feb 18   0.64 0.000000
           UK_England_TFCI  Nov 23   0.010   289   Dec  7  0.781  1605   Feb 16   0.77 0.000000
       UK_Northern-Ireland  Dec 29   0.003  1746   Jan 12  0.924   314   Feb 12   0.92 0.000000
               UK_Scotland  Nov 11   0.000  9103   Nov 25  0.620  4420   Feb 17   0.62 0.000000
                  UK_Wales  Sep 18   0.001  5714   Oct  2  0.270 14732   Feb 18   0.27 0.000000

 

last modified: Tue Dec 22 17:31 2020



GISAID data provided on this website is subject to GISAID's Terms and Conditions

Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health