COVID-19 Viral Genome Analysis Pipeline
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Relative Frequency Change By Geographical Region: Spike 614
Last update: Aug 3, 2020
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S 614 continent
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Asia Jan 24 0.016 185 Feb 7 0.536 4984 Jul 22 0.52 0.000000
Europe Jan 29 0.294 17 Feb 12 0.818 34361 Jul 20 0.52 0.000003
North-America Feb 28 0.052 96 Mar 13 0.837 13178 Jul 7 0.79 0.000000
Oceania Mar 6 0.069 58 Mar 20 0.665 1254 Jul 25 0.60 0.000000
South-America Mar 4 0.611 18 Mar 18 0.956 481 Jul 3 0.35 0.000017
S 614 country
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Australia Mar 6 0.055 55 Mar 20 0.654 1108 Jul 25 0.60 0.000000
Bangladesh May 10 0.909 33 May 24 0.995 218 Jul 21 0.09 0.007620
Brazil Mar 4 0.733 15 Mar 18 0.989 188 Jun 1 0.26 0.000272
Canada Mar 4 0.167 18 Mar 18 0.943 331 May 13 0.78 0.000000
Chile Mar 10 0.450 20 Mar 24 0.978 46 May 1 0.53 0.000002
China Jan 28 0.012 259 Feb 11 0.201 264 Jul 22 0.19 0.000000
Colombia Mar 20 0.625 16 Apr 3 1.000 26 Apr 26 0.38 0.001527
DRC Mar 22 0.850 20 Apr 5 0.976 127 May 15 0.13 0.033297
Ecuador Apr 17 0.800 15 May 1 1.000 25 Jul 3 0.20 0.046053
Finland Mar 13 0.885 26 Mar 27 0.991 220 May 16 0.11 0.009157
France Feb 26 0.333 18 Mar 11 0.995 215 Jun 18 0.66 0.000000
Germany Feb 27 0.667 15 Mar 12 0.917 181 Jun 17 0.25 0.010258
Hong-Kong Mar 13 0.026 117 Mar 27 0.859 92 Jul 14 0.83 0.000000
Iceland Mar 11 0.951 61 Mar 25 0.735 49 Mar 29 -0.22 0.002069
India Mar 10 0.429 21 Mar 24 0.690 1537 Jul 4 0.26 0.015910
Israel Mar 15 0.788 33 Mar 29 0.958 119 Apr 27 0.17 0.004434
Italy Feb 22 0.467 15 Mar 7 1.000 129 Jul 7 0.53 0.000000
Japan Mar 9 0.027 183 Mar 23 0.938 226 May 14 0.91 0.000000
Latvia Mar 25 0.800 25 Apr 8 1.000 58 Jul 20 0.20 0.001830
Mexico Mar 14 0.400 15 Mar 28 1.000 37 May 29 0.60 0.000001
Netherlands Mar 1 0.550 20 Mar 15 0.880 1096 May 26 0.33 0.000316
New-Zealand Mar 17 0.278 18 Mar 31 0.845 71 Apr 28 0.57 0.000007
Norway Mar 10 0.588 17 Mar 24 1.000 78 Jul 13 0.41 0.000002
Oman Mar 20 0.312 16 Apr 3 0.984 125 Jun 20 0.67 0.000000
Poland Mar 28 0.840 25 Apr 11 1.000 29 Jun 1 0.16 0.040000
Russia Mar 23 0.923 52 Apr 6 1.000 121 May 5 0.08 0.007511
Senegal Mar 20 0.810 21 Apr 3 1.000 91 Jul 9 0.19 0.000964
South-Africa Mar 27 0.722 18 Apr 10 0.987 306 Jul 15 0.26 0.000033
Spain Mar 1 0.158 19 Mar 15 0.713 442 Jun 22 0.55 0.000002
Sweden Mar 3 0.692 26 Mar 17 0.972 251 Jun 11 0.28 0.000008
Switzerland Mar 25 0.966 119 Apr 8 0.996 226 Jul 9 0.03 0.049979
Thailand Mar 3 0.105 38 Mar 17 0.519 52 May 5 0.41 0.000040
Turkey Mar 19 0.440 25 Apr 2 0.953 86 Jun 6 0.51 0.000000
USA Feb 29 0.052 116 Mar 14 0.844 12437 Jul 7 0.79 0.000000
UK Feb 16 0.143 21 Mar 1 0.805 26037 Jul 17 0.66 0.000000
S 614 subcountry
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Australia_NSW Mar 8 0.111 36 Mar 22 0.699 365 Jul 25 0.59 0.000000
Australia_South-Australia Mar 15 0.235 17 Mar 29 0.778 72 May 5 0.54 0.000047
Australia_Victoria Mar 10 0.130 23 Mar 24 0.713 230 Jun 20 0.58 0.000000
Austria_Vienna Mar 16 0.948 58 Mar 30 0.733 15 Apr 7 -0.21 0.029079
Bangladesh_Chattogram Jun 16 0.600 15 Jun 30 1.000 15 Jul 21 0.40 0.016858
Brazil_Sao-Paulo Mar 9 0.800 15 Mar 23 1.000 39 May 29 0.20 0.018344
Canada_Ontario Mar 7 0.467 15 Mar 21 0.956 90 Apr 29 0.49 0.000009
Chile_Santiago Mar 10 0.471 17 Mar 24 0.955 22 Apr 30 0.48 0.000872
Germany_North-Rhine-Westphalia Mar 14 0.444 18 Mar 28 1.000 34 Jun 17 0.56 0.000003
Iceland_Reykjavik Mar 11 0.951 61 Mar 25 0.735 49 Mar 29 -0.22 0.002069
India_Delhi Mar 30 0.733 15 Apr 13 0.096 157 May 28 -0.64 0.000000
India_Gujarat Apr 26 0.867 30 May 10 0.966 290 Jul 4 0.10 0.032440
India_Karnataka Apr 23 0.412 17 May 7 0.760 25 Jun 17 0.35 0.029125
India_Maharashtra Mar 26 0.316 19 Apr 9 0.941 187 Jun 16 0.63 0.000000
India_Telangana Mar 31 0.176 17 Apr 14 0.881 235 Jun 13 0.70 0.000000
India_Telangana_Hyderabad May 13 0.750 16 May 27 0.928 97 Jun 13 0.18 0.048599
Japan_Kanto Mar 9 0.083 36 Mar 23 0.954 87 May 14 0.87 0.000000
Netherlands_Gelderland Mar 20 0.667 15 Apr 3 0.984 126 May 26 0.32 0.000129
Netherlands_Limburg Mar 27 0.600 15 Apr 10 0.970 33 May 19 0.37 0.002331
Netherlands_Zuid-Holland Mar 6 0.750 16 Mar 20 0.952 147 May 14 0.20 0.013659
Oman_Muscat Mar 20 0.333 15 Apr 3 0.977 87 Jun 20 0.64 0.000000
Senegal_Dakar Apr 6 0.800 15 Apr 20 1.000 70 Jul 9 0.20 0.004607
Spain_Basque-Country Mar 5 0.188 16 Mar 19 0.957 47 Jun 22 0.77 0.000000
Spain_Com-Valenciana Mar 10 0.108 37 Mar 24 0.768 56 Apr 1 0.66 0.000000
Sweden_Stockholm Mar 3 0.773 22 Mar 17 1.000 36 Jun 11 0.23 0.005747
Sweden_Vastra-Gotaland Mar 25 0.600 15 Apr 8 1.000 35 Jun 9 0.40 0.000315
USA_CA Mar 11 0.077 52 Mar 25 0.839 1612 Jun 30 0.76 0.000000
USA_CA_Alameda Apr 12 0.235 17 Apr 26 1.000 41 Jun 19 0.76 0.000000
USA_CA_San-Diego Mar 12 0.353 17 Mar 26 0.982 563 Jun 30 0.63 0.000000
USA_CA_San-Joaquin Mar 26 0.235 17 Apr 9 0.828 64 May 9 0.59 0.000008
USA_Florida Mar 10 0.533 15 Mar 24 0.896 259 Jun 30 0.36 0.000771
USA_Illinois Mar 14 0.333 18 Mar 28 0.939 66 Jul 7 0.61 0.000000
USA_Michigan Mar 13 0.919 37 Mar 27 0.991 530 May 29 0.07 0.011435
USA_Minnesota Mar 11 0.353 17 Mar 25 0.884 362 Jul 5 0.53 0.000001
USA_NY Mar 4 0.750 20 Mar 18 0.957 915 Jul 5 0.21 0.001677
USA_Oregon Mar 23 0.238 21 Apr 6 0.834 145 Jul 1 0.60 0.000000
USA_South-Carolina Mar 27 0.222 18 Apr 10 0.938 16 Jun 19 0.72 0.000028
USA_Utah Mar 12 0.588 17 Mar 26 0.973 473 Jun 22 0.38 0.000001
USA_Virginia Mar 11 0.550 20 Mar 25 0.952 441 May 29 0.40 0.000001
USA_WA Mar 7 0.016 185 Mar 21 0.781 2951 Jul 3 0.76 0.000000
USA_WA_King Mar 13 0.025 122 Mar 27 0.782 110 Jun 16 0.76 0.000000
USA_WA_Pierce Apr 8 0.256 43 Apr 22 0.988 83 Jun 23 0.73 0.000000
USA_WA_Snohomish Mar 28 0.108 37 Apr 11 0.935 124 Jun 20 0.83 0.000000
USA_WA_Yakima Mar 25 0.375 32 Apr 8 0.829 1460 Jun 23 0.45 0.000000
USA_WI Mar 15 0.739 23 Mar 29 0.893 580 Jul 7 0.15 0.035173
USA_WI_Dane Mar 20 0.706 17 Apr 3 0.989 280 Jul 7 0.28 0.000017
UK_England Feb 24 0.115 26 Mar 9 0.812 16534 Jul 17 0.70 0.000000
UK_England_BIRM Apr 28 0.893 28 May 12 1.000 74 Jun 19 0.11 0.019080
UK_England_Cambridge Mar 4 0.667 21 Mar 18 0.842 4656 Jul 17 0.18 0.037497
UK_England_Exeter Mar 26 0.588 17 Apr 9 0.906 139 Jun 3 0.32 0.001721
UK_England_GSTT Mar 14 0.167 18 Mar 28 0.627 75 Mar 31 0.46 0.000516
UK_England_London Mar 27 0.609 23 Apr 10 0.929 366 May 14 0.32 0.000046
UK_England_Northampton Mar 12 0.632 19 Mar 26 0.831 1091 Jul 6 0.20 0.031689
UK_England_Norwich Apr 8 0.774 31 Apr 22 0.933 375 Jun 17 0.16 0.006550
UK_England_Nottingham Mar 14 0.143 21 Mar 28 0.794 675 Jul 17 0.65 0.000000
UK_England_Oxford Apr 2 0.688 16 Apr 16 0.970 169 May 6 0.28 0.000495
UK_England_Portsmouth Mar 23 0.250 16 Apr 6 0.912 137 Jun 9 0.66 0.000000
UK_England_Sheffield Mar 18 0.500 18 Apr 1 0.954 720 Jul 12 0.45 0.000000
UK_Northern-Ireland Mar 17 0.250 16 Mar 31 0.949 594 Jun 1 0.70 0.000000
UK_Wales Mar 12 0.588 17 Mar 26 0.865 4107 Jul 13 0.28 0.004694
last modified: Mon Jul 20 12:16 2020
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