COVID-19 Viral Genome Analysis Pipeline
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Relative Frequency Change By Geographical Region: Spike 614
Last update: Sep 18, 2020
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S 614 continent
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Africa Mar 13 0.857 21 Mar 27 0.971 1801 Aug 25 0.11 0.024705
Asia Jan 28 0.009 337 Feb 11 0.628 7226 Sep 8 0.62 0.000000
Europe Jan 29 0.250 16 Feb 12 0.844 43590 Sep 10 0.59 0.000000
North-America Feb 28 0.050 100 Mar 13 0.873 19369 Sep 12 0.82 0.000000
Oceania Mar 4 0.060 50 Mar 18 0.880 5109 Sep 9 0.82 0.000000
South-America Mar 4 0.632 19 Mar 18 0.969 875 Aug 20 0.34 0.000002
S 614 country
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Australia Mar 6 0.071 56 Mar 20 0.904 4741 Sep 9 0.83 0.000000
Bangladesh May 10 0.909 33 May 24 0.996 255 Jul 31 0.09 0.005102
Brazil Mar 4 0.733 15 Mar 18 0.992 397 Aug 15 0.26 0.000038
Canada Mar 1 0.333 15 Mar 15 0.904 1047 Jul 15 0.57 0.000000
Chile Mar 10 0.450 20 Mar 24 0.978 46 May 1 0.53 0.000002
China Jan 28 0.011 267 Feb 11 0.201 264 Jul 22 0.19 0.000000
Colombia Mar 20 0.625 16 Apr 3 1.000 37 Jul 17 0.38 0.000349
DRC Mar 22 0.850 20 Apr 5 0.985 268 May 30 0.14 0.008434
Ecuador Apr 17 0.812 16 May 1 0.980 49 Aug 20 0.17 0.043218
Finland Mar 13 0.885 26 Mar 27 0.991 220 May 16 0.11 0.009157
France Feb 26 0.333 18 Mar 11 0.994 354 Jun 18 0.66 0.000000
Germany Feb 27 0.667 15 Mar 12 0.891 220 Jun 17 0.22 0.025016
Hong-Kong Mar 13 0.021 141 Mar 27 0.907 151 Aug 17 0.89 0.000000
Iceland Mar 11 0.951 61 Mar 25 0.735 49 Mar 29 -0.22 0.002069
India Mar 10 0.429 21 Mar 24 0.754 2228 Aug 24 0.33 0.001571
Indonesia May 5 0.158 19 May 19 0.875 24 Aug 20 0.72 0.000003
Ireland Jul 4 0.833 18 Jul 18 1.000 70 Aug 13 0.17 0.007436
Israel Mar 15 0.800 35 Mar 29 0.961 180 Jul 24 0.16 0.002500
Italy Feb 22 0.467 15 Mar 7 1.000 231 Jul 20 0.53 0.000000
Japan Mar 9 0.027 183 Mar 23 0.938 227 May 14 0.91 0.000000
Latvia Mar 25 0.800 25 Apr 8 1.000 104 Aug 26 0.20 0.000193
Mexico Mar 14 0.400 15 Mar 28 1.000 45 Jul 5 0.60 0.000000
Netherlands Mar 1 0.524 21 Mar 15 0.897 1751 Aug 17 0.37 0.000020
New-Zealand Mar 17 0.278 18 Mar 31 0.845 71 Apr 28 0.57 0.000007
Nigeria Apr 23 0.353 17 May 7 0.957 23 Jun 17 0.60 0.000052
Norway Mar 10 0.588 17 Mar 24 1.000 78 Jul 13 0.41 0.000002
Oman Mar 20 0.312 16 Apr 3 0.951 164 Jun 20 0.64 0.000000
Poland Mar 28 0.840 25 Apr 11 1.000 37 Jun 9 0.16 0.022677
Russia Mar 23 0.925 53 Apr 6 0.996 269 Jul 17 0.07 0.002920
Saudi-Arabia Mar 15 0.921 38 Mar 29 0.696 448 Aug 4 -0.22 0.002328
Senegal Mar 20 0.810 21 Apr 3 1.000 91 Jul 9 0.19 0.000964
South-Africa Mar 27 0.722 18 Apr 10 0.996 1052 Aug 25 0.27 0.000000
South-Korea Mar 17 0.018 171 Mar 31 0.979 606 Aug 11 0.96 0.000000
Spain Mar 1 0.143 21 Mar 15 0.787 804 Aug 31 0.64 0.000000
Sweden Mar 3 0.692 26 Mar 17 0.980 356 Aug 21 0.29 0.000001
Switzerland Mar 13 0.958 165 Mar 27 0.998 655 Aug 20 0.04 0.000080
Thailand Mar 3 0.081 37 Mar 17 0.508 61 May 5 0.43 0.000009
Turkey Mar 19 0.440 25 Apr 2 0.953 86 Jun 6 0.51 0.000000
USA Feb 29 0.050 121 Mar 14 0.878 17798 Sep 12 0.83 0.000000
UK Feb 24 0.115 26 Mar 9 0.834 31500 Sep 10 0.72 0.000000
S 614 subcountry
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date G/(G+D) G+D Date G/(G+D) G+D Sample G/(G+D) p-val
Australia_NSW Mar 6 0.100 30 Mar 20 0.736 749 Sep 9 0.64 0.000000
Australia_NSW_Sydney Mar 8 0.111 36 Mar 22 0.793 550 Aug 15 0.68 0.000000
Australia_Queensland Mar 19 0.400 15 Apr 2 0.909 33 Aug 30 0.51 0.000415
Australia_South-Australia Mar 15 0.235 17 Mar 29 0.814 86 Aug 15 0.58 0.000007
Australia_Victoria Mar 10 0.130 23 Mar 24 0.979 3434 Jul 31 0.85 0.000000
Australia_Western-Australia Mar 20 0.300 20 Apr 3 0.864 44 Jul 15 0.56 0.000015
Austria_Vienna Mar 16 0.948 58 Mar 30 0.733 15 Apr 7 -0.21 0.029079
Bangladesh_Chittagong Jun 16 0.647 17 Jun 30 1.000 42 Jul 24 0.35 0.000275
Brazil_Rio-de-Janeiro Apr 2 0.867 30 Apr 16 1.000 97 Jul 20 0.13 0.002652
Brazil_Sao-Paulo Mar 9 0.800 15 Mar 23 1.000 128 Aug 15 0.20 0.000953
Canada_Ontario Mar 7 0.467 15 Mar 21 0.955 178 Jun 20 0.49 0.000002
Canada_Quebec Mar 11 0.600 15 Mar 25 0.951 369 Apr 19 0.35 0.000108
Chile_Santiago Mar 10 0.471 17 Mar 24 0.955 22 Apr 30 0.48 0.000872
Germany_North-Rhine-Westphalia Mar 11 0.222 18 Mar 25 0.921 38 Jun 17 0.70 0.000000
Iceland_Reykjavik Mar 11 0.951 61 Mar 25 0.735 49 Mar 29 -0.22 0.002069
India_Delhi Mar 30 0.733 15 Apr 13 0.145 166 Aug 24 -0.59 0.000003
India_Gujarat Apr 26 0.867 30 May 10 0.965 403 Jul 27 0.10 0.028999
India_Karnataka Apr 21 0.200 15 May 5 0.781 105 Jun 21 0.58 0.000019
India_Maharashtra Mar 23 0.400 15 Apr 6 0.935 308 Jul 7 0.54 0.000000
India_Telangana Mar 31 0.176 17 Apr 14 0.915 330 Jul 15 0.74 0.000000
India_Telangana_Hyderabad Apr 15 0.200 15 Apr 29 0.960 201 Jun 13 0.76 0.000000
India_Uttar-Pradesh Apr 2 0.467 15 Apr 16 0.853 34 Jun 27 0.39 0.011308
India_West-Bengal Mar 31 0.625 16 Apr 14 0.901 152 Jun 11 0.28 0.006572
Japan_Kanto Mar 9 0.083 36 Mar 23 0.954 87 May 14 0.87 0.000000
Netherlands_Gelderland Mar 20 0.688 16 Apr 3 0.987 229 Aug 7 0.30 0.000031
Netherlands_Limburg Mar 21 0.667 15 Apr 4 0.969 64 Jul 9 0.30 0.002201
Netherlands_Noord-Brabant Mar 5 0.471 17 Mar 19 0.775 209 Jul 29 0.30 0.015330
Netherlands_Zuid-Holland Mar 6 0.750 16 Mar 20 0.968 348 Aug 17 0.22 0.002561
Oman_Muscat Mar 20 0.333 15 Apr 3 0.952 124 Jun 20 0.62 0.000000
Senegal_Dakar Apr 2 0.800 15 Apr 16 1.000 87 Jul 9 0.20 0.002650
South-Africa_KZN Jun 17 0.977 131 Jul 1 1.000 641 Aug 25 0.02 0.004793
Spain_Andalucia Mar 12 0.158 19 Mar 26 0.704 27 Jul 14 0.55 0.000331
Spain_Basque-Country Mar 5 0.188 16 Mar 19 0.913 92 Jun 29 0.73 0.000000
Spain_Basque-Country_San-Sebastian Mar 28 0.647 17 Apr 11 1.000 31 Jun 29 0.35 0.001009
Spain_Com-Valenciana Mar 10 0.108 37 Mar 24 0.831 89 Apr 8 0.72 0.000000
Spain_Com-Valenciana_Valencia Mar 10 0.108 37 Mar 24 0.629 35 Apr 1 0.52 0.000005
Spain_La-Rioja Mar 11 0.137 51 Mar 25 0.810 21 Apr 4 0.67 0.000000
Spain_La-Rioja_Logrono Mar 11 0.121 33 Mar 25 0.778 18 Apr 4 0.66 0.000005
Spain_Madrid Mar 6 0.533 15 Mar 20 0.831 207 Aug 4 0.30 0.010537
Sweden_Stockholm Mar 3 0.773 22 Mar 17 1.000 60 Aug 9 0.23 0.000965
Sweden_Vastra-Gotaland Mar 25 0.600 15 Apr 8 1.000 54 Jul 14 0.40 0.000042
Switzerland_Basel-Land Mar 13 0.909 33 Mar 27 0.992 127 Aug 20 0.08 0.027908
USA_Alaska Mar 23 0.600 15 Apr 6 0.989 91 Jul 24 0.39 0.000019
USA_CA Mar 7 0.075 40 Mar 21 0.864 2282 Sep 2 0.79 0.000000
USA_CA_Alameda Apr 12 0.222 18 Apr 26 1.000 88 Jun 19 0.78 0.000000
USA_CA_Los-Angeles Mar 17 0.600 15 Mar 31 0.912 160 Sep 2 0.31 0.002707
USA_CA_San-Diego Mar 12 0.353 17 Mar 26 0.985 678 Sep 2 0.63 0.000000
USA_CA_San-Joaquin Mar 26 0.235 17 Apr 9 0.831 65 Jun 27 0.60 0.000007
USA_CA_Santa-Clara_PHD May 6 0.027 147 May 20 1.000 18 Jun 23 0.97 0.000000
USA_Colorado Mar 31 0.733 15 Apr 14 1.000 41 Jun 29 0.27 0.003716
USA_Connecticut Mar 14 0.875 32 Mar 28 0.967 211 Aug 17 0.09 0.042151
USA_Florida Mar 9 0.533 15 Mar 23 0.934 679 Sep 5 0.40 0.000036
USA_Georgia Mar 13 0.250 20 Mar 27 0.913 23 Jul 29 0.66 0.000010
USA_Illinois Mar 14 0.333 18 Mar 28 0.950 80 Sep 6 0.62 0.000000
USA_Michigan Mar 13 0.925 40 Mar 27 0.990 688 Aug 5 0.06 0.014107
USA_Minnesota Mar 11 0.353 17 Mar 25 0.859 661 Aug 22 0.51 0.000004
USA_Nevada Mar 15 0.200 15 Mar 29 0.990 104 Jun 2 0.79 0.000000
USA_New-Mexico Mar 20 0.857 21 Apr 3 0.989 92 Jul 22 0.13 0.019933
USA_NY Mar 4 0.714 21 Mar 18 0.957 992 Sep 9 0.24 0.000293
USA_Oregon Mar 23 0.238 21 Apr 6 0.950 501 Jul 31 0.71 0.000000
USA_Oregon_WA Apr 17 0.667 15 May 1 0.994 156 Jul 30 0.33 0.000015
USA_South-Carolina Mar 27 0.200 20 Apr 10 0.976 127 Jul 21 0.78 0.000000
USA_Texas Mar 13 0.700 20 Mar 27 0.909 317 Jul 22 0.21 0.010780
USA_Utah Mar 12 0.588 17 Mar 26 0.983 1462 Aug 14 0.39 0.000000
USA_Virginia Mar 11 0.550 20 Mar 25 0.968 808 Aug 12 0.42 0.000000
USA_WA Mar 7 0.016 185 Mar 21 0.789 3111 Aug 29 0.77 0.000000
USA_WA_King Mar 13 0.025 122 Mar 27 0.873 189 Aug 29 0.85 0.000000
USA_WA_Pierce Apr 8 0.256 43 Apr 22 0.988 83 Jun 23 0.73 0.000000
USA_WA_Snohomish Mar 28 0.108 37 Apr 11 0.935 124 Jun 20 0.83 0.000000
USA_WA_Yakima Mar 25 0.375 32 Apr 8 0.829 1460 Jun 23 0.45 0.000000
USA_WI Mar 15 0.739 23 Mar 29 0.938 1062 Sep 12 0.20 0.002834
USA_WI_Dane Mar 20 0.706 17 Apr 3 0.995 604 Sep 12 0.29 0.000000
USA_WI_Milwaukee Mar 19 0.353 17 Apr 2 0.663 104 Aug 30 0.31 0.028431
USA_WI_Ozaukee Mar 27 0.176 17 Apr 10 1.000 15 Jun 27 0.82 0.000001
UK_England Feb 24 0.115 26 Mar 9 0.836 20705 Sep 10 0.72 0.000000
UK_England_BIRM Mar 25 0.533 15 Apr 8 0.975 198 Sep 2 0.44 0.000001
UK_England_Cambridge Mar 4 0.667 21 Mar 18 0.844 4743 Aug 19 0.18 0.035187
UK_England_Exeter Mar 26 0.588 17 Apr 9 0.907 140 Jun 3 0.32 0.001654
UK_England_GSTT Mar 14 0.167 18 Mar 28 0.627 75 Mar 31 0.46 0.000516
UK_England_London Mar 13 0.625 16 Mar 27 0.878 747 Jun 16 0.25 0.010001
UK_England_Northampton Mar 12 0.600 20 Mar 26 0.833 1116 Jul 15 0.23 0.012268
UK_England_Norwich Apr 8 0.774 31 Apr 22 0.933 375 Jun 17 0.16 0.006550
UK_England_Nottingham Mar 14 0.143 21 Mar 28 0.798 692 Sep 10 0.65 0.000000
UK_England_Oxford Mar 20 0.650 20 Apr 3 0.945 562 Jun 7 0.29 0.000120
UK_England_Portsmouth Mar 20 0.286 21 Apr 3 0.917 204 Aug 18 0.63 0.000000
UK_England_Sheffield Mar 18 0.500 18 Apr 1 0.961 868 Aug 25 0.46 0.000000
UK_Northern-Ireland Mar 17 0.250 16 Mar 31 0.972 1090 Aug 26 0.72 0.000000
UK_Wales Mar 12 0.562 16 Mar 26 0.871 4291 Sep 7 0.31 0.002421
last modified: Mon Jul 20 12:16 2020
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