COVID-19 Viral Genome Analysis Pipeline
Enabled by data from
Tables of mutating sites in Spike, updated daily
Last update: Apr 18, 2024
Download Previous page
Collection dates: 2024-01-19 - 2024-04-17
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 83,816
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | F | 552 | 0.0065859 |
| I | 1 | 0.0000119 | ||
| X | 2676 | 0.0319271 | ||
| Q | 14 | - | 16 | 0.0001909 |
| H | 87 | 0.0010380 | ||
| K | 484 | 0.0057746 | ||
| L | 9 | 0.0001074 | ||
| R | 107 | 0.0012766 | ||
| X | 1196 | 0.0142694 | ||
| N | 17 | - | 17 | 0.0002028 |
| A | 1 | 0.0000119 | ||
| D | 2 | 0.0000239 | ||
| H | 4 | 0.0000477 | ||
| I | 13 | 0.0001551 | ||
| K | 3 | 0.0000358 | ||
| L | 2 | 0.0000239 | ||
| M | 1077 | 0.0128496 | ||
| S | 1 | 0.0000119 | ||
| T | 3 | 0.0000358 | ||
| V | 1 | 0.0000119 | ||
| X | 7529 | 0.0898277 | ||
| T | 19 | - | 4 | 0.0000477 |
| A | 3 | 0.0000358 | ||
| F | 440 | 0.0052496 | ||
| I | 74114 | 0.8842464 | ||
| L | 7 | 0.0000835 | ||
| M | 1 | 0.0000119 | ||
| N | 6 | 0.0000716 | ||
| R | 6 | 0.0000716 | ||
| S | 2 | 0.0000239 | ||
| V | 2 | 0.0000239 | ||
| X | 8160 | 0.0973561 | ||
| R | 21 | - | 444 | 0.0052973 |
| A | 1 | 0.0000119 | ||
| G | 4 | 0.0000477 | ||
| I | 69 | 0.0008232 | ||
| K | 1 | 0.0000119 | ||
| L | 4 | 0.0000477 | ||
| P | 2 | 0.0000239 | ||
| S | 2 | 0.0000239 | ||
| T | 68932 | 0.8224205 | ||
| X | 8598 | 0.1025818 | ||
| Y | 3 | 0.0000358 | ||
| L | 24 | - | 70074 | 0.8360456 |
| F | 8 | 0.0000954 | ||
| S | 57 | 0.0006801 | ||
| T | 5 | 0.0000597 | ||
| X | 13127 | 0.1566169 | ||
| P | 25 | - | 70609 | 0.8424287 |
| F | 7 | 0.0000835 | ||
| H | 1 | 0.0000119 | ||
| I | 11 | 0.0001312 | ||
| L | 1 | 0.0000119 | ||
| N | 3 | 0.0000358 | ||
| Q | 1 | 0.0000119 | ||
| S | 29 | 0.0003460 | ||
| T | 184 | 0.0021953 | ||
| X | 12652 | 0.1509497 | ||
| Y | 7 | 0.0000835 | ||
| P | 26 | - | 70652 | 0.8429417 |
| F | 1 | 0.0000119 | ||
| H | 3 | 0.0000358 | ||
| Q | 214 | 0.0025532 | ||
| S | 1 | 0.0000119 | ||
| T | 16 | 0.0001909 | ||
| X | 12559 | 0.1498401 | ||
| A | 27 | - | 624 | 0.0074449 |
| P | 1 | 0.0000119 | ||
| S | 73223 | 0.8736160 | ||
| T | 11 | 0.0001312 | ||
| X | 9429 | 0.1124964 | ||
| S | 31 | - | 140 | 0.0016703 |
| F | 761 | 0.0090794 | ||
| P | 43 | 0.0005130 | ||
| T | 5 | 0.0000597 | ||
| X | 1043 | 0.0124439 | ||
| Y | 2 | 0.0000239 | ||
| S | 50 | L | 74512 | 0.8889949 |
| X | 4030 | 0.0480815 | ||
| Q | 52 | E | 1 | 0.0000119 |
| H | 3080 | 0.0367472 | ||
| K | 9 | 0.0001074 | ||
| R | 47 | 0.0005608 | ||
| X | 3167 | 0.0377851 | ||
| Y | 3 | 0.0000358 | ||
| F | 59 | - | 5 | 0.0000597 |
| I | 1 | 0.0000119 | ||
| L | 49 | 0.0005846 | ||
| R | 1 | 0.0000119 | ||
| S | 825 | 0.0098430 | ||
| V | 2 | 0.0000239 | ||
| X | 3057 | 0.0364727 | ||
| S | 60 | A | 32 | 0.0003818 |
| F | 63 | 0.0007516 | ||
| P | 205 | 0.0024458 | ||
| T | 1 | 0.0000119 | ||
| X | 2922 | 0.0348621 | ||
| Y | 1 | 0.0000119 | ||
| A | 67 | - | 3 | 0.0000358 |
| G | 1 | 0.0000119 | ||
| S | 20 | 0.0002386 | ||
| T | 1 | 0.0000119 | ||
| V | 277 | 0.0033049 | ||
| X | 2933 | 0.0349933 | ||
| H | 69 | - | 69867 | 0.8335759 |
| A | 4 | 0.0000477 | ||
| F | 88 | 0.0010499 | ||
| L | 31 | 0.0003699 | ||
| P | 4 | 0.0000477 | ||
| S | 14 | 0.0001670 | ||
| T | 1 | 0.0000119 | ||
| X | 8814 | 0.1051589 | ||
| Y | 12 | 0.0001432 | ||
| V | 70 | - | 70496 | 0.8410805 |
| A | 5 | 0.0000597 | ||
| F | 4 | 0.0000477 | ||
| I | 35 | 0.0004176 | ||
| L | 10 | 0.0001193 | ||
| X | 8253 | 0.0984657 | ||
| V | 83 | - | 3 | 0.0000358 |
| A | 4625 | 0.0551804 | ||
| F | 10 | 0.0001193 | ||
| I | 12 | 0.0001432 | ||
| L | 1 | 0.0000119 | ||
| P | 1 | 0.0000119 | ||
| S | 1 | 0.0000119 | ||
| T | 4 | 0.0000477 | ||
| X | 3494 | 0.0416866 | ||
| V | 127 | - | 1 | 0.0000119 |
| F | 77039 | 0.9191443 | ||
| L | 1 | 0.0000119 | ||
| X | 1456 | 0.0173714 | ||
| G | 142 | - | 44 | 0.0005250 |
| A | 2 | 0.0000239 | ||
| C | 1 | 0.0000119 | ||
| D | 81699 | 0.9747423 | ||
| H | 1 | 0.0000119 | ||
| N | 1 | 0.0000119 | ||
| X | 1240 | 0.0147943 | ||
| Y | 11 | 0.0001312 | ||
| Y | 144 | - | 78959 | 0.9420516 |
| H | 10 | 0.0001193 | ||
| K | 3 | 0.0000358 | ||
| N | 2 | 0.0000239 | ||
| Q | 20 | 0.0002386 | ||
| X | 3769 | 0.0449675 | ||
| H | 146 | - | 226 | 0.0026964 |
| E | 2 | 0.0000239 | ||
| K | 190 | 0.0022669 | ||
| N | 1 | 0.0000119 | ||
| P | 5 | 0.0000597 | ||
| Q | 4586 | 0.0547151 | ||
| X | 725 | 0.0086499 | ||
| N | 148 | - | 1 | 0.0000119 |
| D | 11 | 0.0001312 | ||
| H | 1 | 0.0000119 | ||
| I | 1 | 0.0000119 | ||
| K | 4 | 0.0000477 | ||
| S | 14 | 0.0001670 | ||
| T | 255 | 0.0030424 | ||
| X | 597 | 0.0071227 | ||
| Y | 7 | 0.0000835 | ||
| F | 157 | - | 37 | 0.0004414 |
| L | 947 | 0.0112986 | ||
| P | 6 | 0.0000716 | ||
| S | 75477 | 0.9005083 | ||
| X | 2781 | 0.0331798 | ||
| R | 158 | - | 36 | 0.0004295 |
| E | 1 | 0.0000119 | ||
| G | 76418 | 0.9117352 | ||
| I | 1 | 0.0000119 | ||
| S | 3 | 0.0000358 | ||
| V | 3 | 0.0000358 | ||
| X | 1755 | 0.0209387 | ||
| K | 182 | - | 6 | 0.0000716 |
| E | 62 | 0.0007397 | ||
| I | 11 | 0.0001312 | ||
| N | 117 | 0.0013959 | ||
| Q | 90 | 0.0010738 | ||
| R | 45 | 0.0005369 | ||
| T | 4 | 0.0000477 | ||
| X | 862 | 0.0102844 | ||
| Q | 183 | - | 5 | 0.0000597 |
| D | 6 | 0.0000716 | ||
| E | 4630 | 0.0552400 | ||
| G | 7 | 0.0000835 | ||
| H | 919 | 0.0109645 | ||
| K | 8 | 0.0000954 | ||
| L | 4 | 0.0000477 | ||
| P | 6 | 0.0000716 | ||
| R | 21 | 0.0002505 | ||
| X | 907 | 0.0108213 | ||
| N | 185 | - | 16 | 0.0001909 |
| D | 665 | 0.0079340 | ||
| H | 1 | 0.0000119 | ||
| I | 215 | 0.0025651 | ||
| K | 2 | 0.0000239 | ||
| S | 47 | 0.0005608 | ||
| T | 7 | 0.0000835 | ||
| X | 1360 | 0.0162260 | ||
| Y | 5 | 0.0000597 | ||
| F | 186 | - | 226 | 0.0026964 |
| I | 3 | 0.0000358 | ||
| L | 34 | 0.0004057 | ||
| N | 1 | 0.0000119 | ||
| R | 1 | 0.0000119 | ||
| S | 41 | 0.0004892 | ||
| V | 3 | 0.0000358 | ||
| W | 2 | 0.0000239 | ||
| X | 1482 | 0.0176816 | ||
| Y | 1 | 0.0000119 | ||
| N | 211 | - | 75187 | 0.8970483 |
| E | 1 | 0.0000119 | ||
| G | 112 | 0.0013363 | ||
| I | 105 | 0.0012527 | ||
| K | 2 | 0.0000239 | ||
| M | 2 | 0.0000239 | ||
| S | 1 | 0.0000119 | ||
| T | 20 | 0.0002386 | ||
| X | 3145 | 0.0375227 | ||
| L | 212 | - | 119 | 0.0014198 |
| G | 92 | 0.0010976 | ||
| I | 75184 | 0.8970125 | ||
| R | 4 | 0.0000477 | ||
| S | 35 | 0.0004176 | ||
| W | 3 | 0.0000358 | ||
| X | 2922 | 0.0348621 | ||
| V | 213 | - | 176 | 0.0020998 |
| C | 3 | 0.0000358 | ||
| E | 4874 | 0.0581512 | ||
| G | 77151 | 0.9204806 | ||
| H | 20 | 0.0002386 | ||
| K | 1 | 0.0000119 | ||
| Q | 6 | 0.0000716 | ||
| S | 3 | 0.0000358 | ||
| X | 1436 | 0.0171328 | ||
| L | 216 | - | 34 | 0.0004057 |
| F | 77253 | 0.9216975 | ||
| P | 2 | 0.0000239 | ||
| S | 2 | 0.0000239 | ||
| X | 1472 | 0.0175623 | ||
| A | 222 | - | 1 | 0.0000119 |
| S | 31 | 0.0003699 | ||
| T | 2 | 0.0000239 | ||
| V | 222 | 0.0026487 | ||
| X | 1102 | 0.0131478 | ||
| H | 245 | - | 17 | 0.0002028 |
| N | 77183 | 0.9208624 | ||
| S | 3 | 0.0000358 | ||
| X | 1957 | 0.0233488 | ||
| Y | 18 | 0.0002148 | ||
| G | 252 | - | 1 | 0.0000119 |
| A | 2 | 0.0000239 | ||
| D | 17 | 0.0002028 | ||
| I | 1 | 0.0000119 | ||
| S | 14 | 0.0001670 | ||
| V | 4072 | 0.0485826 | ||
| X | 1828 | 0.0218097 | ||
| D | 253 | - | 2 | 0.0000239 |
| A | 1 | 0.0000119 | ||
| E | 2 | 0.0000239 | ||
| G | 378 | 0.0045099 | ||
| N | 1 | 0.0000119 | ||
| V | 4 | 0.0000477 | ||
| X | 1822 | 0.0217381 | ||
| Y | 11 | 0.0001312 | ||
| A | 264 | - | 28 | 0.0003341 |
| D | 76114 | 0.9081082 | ||
| G | 2 | 0.0000239 | ||
| N | 3 | 0.0000358 | ||
| T | 1 | 0.0000119 | ||
| X | 2331 | 0.0278109 | ||
| Y | 4 | 0.0000477 | ||
| I | 332 | A | 2 | 0.0000239 |
| L | 1 | 0.0000119 | ||
| V | 76796 | 0.9162451 | ||
| X | 2099 | 0.0250430 | ||
| G | 339 | D | 99 | 0.0011812 |
| H | 81377 | 0.9709005 | ||
| L | 1 | 0.0000119 | ||
| Q | 1 | 0.0000119 | ||
| R | 14 | 0.0001670 | ||
| X | 2117 | 0.0252577 | ||
| Y | 26 | 0.0003102 | ||
| R | 346 | - | 6 | 0.0000716 |
| G | 4 | 0.0000477 | ||
| I | 161 | 0.0019209 | ||
| K | 104 | 0.0012408 | ||
| S | 106 | 0.0012647 | ||
| T | 9066 | 0.1081655 | ||
| X | 2307 | 0.0275246 | ||
| K | 356 | E | 1 | 0.0000119 |
| M | 17 | 0.0002028 | ||
| N | 2 | 0.0000239 | ||
| Q | 2 | 0.0000239 | ||
| R | 1 | 0.0000119 | ||
| T | 76009 | 0.9068555 | ||
| X | 3149 | 0.0375704 | ||
| L | 368 | A | 1 | 0.0000119 |
| I | 4231 | 0.0504796 | ||
| M | 1 | 0.0000119 | ||
| P | 6 | 0.0000716 | ||
| R | 1 | 0.0000119 | ||
| V | 3 | 0.0000358 | ||
| X | 2998 | 0.0357688 | ||
| S | 371 | F | 80230 | 0.9572158 |
| L | 9 | 0.0001074 | ||
| X | 3327 | 0.0396941 | ||
| Y | 2 | 0.0000239 | ||
| S | 373 | A | 1 | 0.0000119 |
| F | 1 | 0.0000119 | ||
| P | 80596 | 0.9615825 | ||
| T | 1 | 0.0000119 | ||
| X | 3116 | 0.0371767 | ||
| S | 375 | - | 25 | 0.0002983 |
| A | 7 | 0.0000835 | ||
| F | 79725 | 0.9511907 | ||
| X | 3596 | 0.0429035 | ||
| T | 376 | - | 250 | 0.0029827 |
| A | 79640 | 0.9501766 | ||
| G | 1 | 0.0000119 | ||
| P | 1 | 0.0000119 | ||
| V | 13 | 0.0001551 | ||
| X | 3525 | 0.0420564 | ||
| R | 403 | E | 1 | 0.0000119 |
| K | 69087 | 0.8242698 | ||
| N | 1 | 0.0000119 | ||
| Q | 1 | 0.0000119 | ||
| S | 2 | 0.0000239 | ||
| T | 3 | 0.0000358 | ||
| X | 8815 | 0.1051709 | ||
| D | 405 | N | 80620 | 0.9618689 |
| S | 4 | 0.0000477 | ||
| X | 2930 | 0.0349575 | ||
| R | 408 | G | 29 | 0.0003460 |
| N | 38 | 0.0004534 | ||
| S | 78404 | 0.9354300 | ||
| X | 3819 | 0.0455641 | ||
| K | 417 | D | 2 | 0.0000239 |
| I | 2 | 0.0000239 | ||
| N | 76896 | 0.9174382 | ||
| S | 3 | 0.0000358 | ||
| T | 19 | 0.0002267 | ||
| X | 5723 | 0.0682805 | ||
| Y | 4 | 0.0000477 | ||
| N | 440 | K | 79438 | 0.9477665 |
| R | 35 | 0.0004176 | ||
| X | 4067 | 0.0485230 | ||
| K | 444 | F | 1 | 0.0000119 |
| I | 1 | 0.0000119 | ||
| M | 2 | 0.0000239 | ||
| N | 40 | 0.0004772 | ||
| Q | 1 | 0.0000119 | ||
| R | 151 | 0.0018016 | ||
| T | 143 | 0.0017061 | ||
| X | 3944 | 0.0470555 | ||
| V | 445 | A | 7 | 0.0000835 |
| D | 4 | 0.0000477 | ||
| H | 74011 | 0.8830176 | ||
| I | 4 | 0.0000477 | ||
| L | 14 | 0.0001670 | ||
| N | 1 | 0.0000119 | ||
| P | 4608 | 0.0549776 | ||
| R | 1 | 0.0000119 | ||
| S | 4 | 0.0000477 | ||
| T | 1 | 0.0000119 | ||
| X | 4740 | 0.0565524 | ||
| Y | 21 | 0.0002505 | ||
| G | 446 | D | 4 | 0.0000477 |
| I | 14 | 0.0001670 | ||
| N | 3 | 0.0000358 | ||
| R | 2 | 0.0000239 | ||
| S | 78773 | 0.9398325 | ||
| T | 8 | 0.0000954 | ||
| X | 4691 | 0.0559678 | ||
| N | 450 | D | 74714 | 0.8914050 |
| E | 1 | 0.0000119 | ||
| I | 1 | 0.0000119 | ||
| K | 2 | 0.0000239 | ||
| X | 4565 | 0.0544645 | ||
| Y | 2 | 0.0000239 | ||
| L | 452 | - | 1 | 0.0000119 |
| M | 17 | 0.0002028 | ||
| Q | 18 | 0.0002148 | ||
| R | 800 | 0.0095447 | ||
| W | 74004 | 0.8829340 | ||
| X | 4721 | 0.0563258 | ||
| L | 455 | - | 2 | 0.0000239 |
| A | 7 | 0.0000835 | ||
| F | 2862 | 0.0341462 | ||
| P | 1 | 0.0000119 | ||
| S | 71854 | 0.8572826 | ||
| V | 1 | 0.0000119 | ||
| W | 3 | 0.0000358 | ||
| X | 4178 | 0.0498473 | ||
| F | 456 | - | 1 | 0.0000119 |
| L | 7008 | 0.0836117 | ||
| S | 3 | 0.0000358 | ||
| V | 139 | 0.0016584 | ||
| X | 4025 | 0.0480219 | ||
| N | 460 | - | 2 | 0.0000239 |
| H | 3 | 0.0000358 | ||
| K | 79208 | 0.9450224 | ||
| R | 1 | 0.0000119 | ||
| S | 1 | 0.0000119 | ||
| T | 1 | 0.0000119 | ||
| X | 4158 | 0.0496087 | ||
| Y | 1 | 0.0000119 | ||
| A | 475 | - | 1 | 0.0000119 |
| S | 14 | 0.0001670 | ||
| T | 1 | 0.0000119 | ||
| V | 991 | 0.0118235 | ||
| X | 2315 | 0.0276200 | ||
| S | 477 | - | 1 | 0.0000119 |
| D | 16 | 0.0001909 | ||
| K | 5 | 0.0000597 | ||
| N | 80774 | 0.9637062 | ||
| X | 2498 | 0.0298034 | ||
| T | 478 | - | 1 | 0.0000119 |
| E | 28 | 0.0003341 | ||
| I | 85 | 0.0010141 | ||
| K | 79783 | 0.9518827 | ||
| N | 37 | 0.0004414 | ||
| Q | 11 | 0.0001312 | ||
| R | 629 | 0.0075045 | ||
| X | 2549 | 0.0304119 | ||
| N | 481 | - | 1 | 0.0000119 |
| D | 1 | 0.0000119 | ||
| E | 13 | 0.0001551 | ||
| H | 1 | 0.0000119 | ||
| I | 4 | 0.0000477 | ||
| K | 75680 | 0.9029302 | ||
| R | 53 | 0.0006323 | ||
| S | 6 | 0.0000716 | ||
| X | 3074 | 0.0366756 | ||
| V | 483 | - | 69938 | 0.8344230 |
| A | 16 | 0.0001909 | ||
| D | 1 | 0.0000119 | ||
| F | 1 | 0.0000119 | ||
| G | 3 | 0.0000358 | ||
| I | 5 | 0.0000597 | ||
| K | 12 | 0.0001432 | ||
| R | 6 | 0.0000716 | ||
| T | 11 | 0.0001312 | ||
| X | 8135 | 0.0970578 | ||
| E | 484 | - | 133 | 0.0015868 |
| A | 4773 | 0.0569462 | ||
| K | 74319 | 0.8866923 | ||
| N | 1 | 0.0000119 | ||
| P | 4 | 0.0000477 | ||
| R | 1 | 0.0000119 | ||
| S | 6 | 0.0000716 | ||
| T | 1 | 0.0000119 | ||
| V | 6 | 0.0000716 | ||
| X | 3685 | 0.0439654 | ||
| F | 486 | - | 27 | 0.0003221 |
| A | 5 | 0.0000597 | ||
| H | 7 | 0.0000835 | ||
| L | 32 | 0.0003818 | ||
| P | 80475 | 0.9601389 | ||
| R | 1 | 0.0000119 | ||
| S | 60 | 0.0007159 | ||
| V | 33 | 0.0003937 | ||
| X | 2866 | 0.0341939 | ||
| F | 490 | - | 1 | 0.0000119 |
| L | 3 | 0.0000358 | ||
| P | 71 | 0.0008471 | ||
| S | 4623 | 0.0551565 | ||
| X | 2073 | 0.0247327 | ||
| Y | 3 | 0.0000358 | ||
| Q | 493 | - | 1 | 0.0000119 |
| E | 170 | 0.0020283 | ||
| H | 1 | 0.0000119 | ||
| K | 1 | 0.0000119 | ||
| L | 15 | 0.0001790 | ||
| R | 13 | 0.0001551 | ||
| X | 2011 | 0.0239930 | ||
| Q | 498 | - | 1 | 0.0000119 |
| R | 80300 | 0.9580510 | ||
| X | 3431 | 0.0409349 | ||
| N | 501 | - | 4 | 0.0000477 |
| F | 1 | 0.0000119 | ||
| X | 3272 | 0.0390379 | ||
| Y | 80457 | 0.9599241 | ||
| Y | 505 | - | 1 | 0.0000119 |
| H | 80231 | 0.9572277 | ||
| Q | 1 | 0.0000119 | ||
| X | 3280 | 0.0391333 | ||
| P | 521 | L | 2 | 0.0000239 |
| Q | 4 | 0.0000477 | ||
| S | 363 | 0.0043309 | ||
| T | 34 | 0.0004057 | ||
| X | 1276 | 0.0152238 | ||
| E | 554 | - | 1 | 0.0000119 |
| A | 6 | 0.0000716 | ||
| D | 4 | 0.0000477 | ||
| G | 11 | 0.0001312 | ||
| K | 78616 | 0.9379593 | ||
| N | 16 | 0.0001909 | ||
| Q | 20 | 0.0002386 | ||
| T | 13 | 0.0001551 | ||
| V | 2 | 0.0000239 | ||
| X | 292 | 0.0034838 | ||
| A | 570 | D | 2 | 0.0000239 |
| I | 5 | 0.0000597 | ||
| L | 1 | 0.0000119 | ||
| T | 1 | 0.0000119 | ||
| V | 78614 | 0.9379355 | ||
| X | 258 | 0.0030782 | ||
| T | 572 | I | 9178 | 0.1095018 |
| S | 2 | 0.0000239 | ||
| X | 188 | 0.0022430 | ||
| P | 621 | - | 5 | 0.0000597 |
| C | 1 | 0.0000119 | ||
| F | 32 | 0.0003818 | ||
| H | 1 | 0.0000119 | ||
| L | 1 | 0.0000119 | ||
| S | 78249 | 0.9335807 | ||
| T | 1 | 0.0000119 | ||
| X | 586 | 0.0069915 | ||
| Y | 1 | 0.0000119 | ||
| H | 655 | N | 1 | 0.0000119 |
| X | 2941 | 0.0350888 | ||
| Y | 80825 | 0.9643147 | ||
| Q | 677 | E | 1 | 0.0000119 |
| H | 265 | 0.0031617 | ||
| K | 10 | 0.0001193 | ||
| L | 7 | 0.0000835 | ||
| P | 1 | 0.0000119 | ||
| R | 24 | 0.0002863 | ||
| X | 808 | 0.0096402 | ||
| N | 679 | - | 1 | 0.0000119 |
| E | 4 | 0.0000477 | ||
| G | 2 | 0.0000239 | ||
| K | 82247 | 0.9812804 | ||
| M | 23 | 0.0002744 | ||
| R | 150 | 0.0017896 | ||
| T | 15 | 0.0001790 | ||
| X | 1050 | 0.0125274 | ||
| S | 680 | - | 102 | 0.0012170 |
| A | 6 | 0.0000716 | ||
| F | 494 | 0.0058939 | ||
| T | 2 | 0.0000239 | ||
| X | 761 | 0.0090794 | ||
| Y | 149 | 0.0017777 | ||
| P | 681 | - | 763 | 0.0091033 |
| C | 1 | 0.0000119 | ||
| G | 2 | 0.0000239 | ||
| H | 5025 | 0.0599528 | ||
| L | 18 | 0.0002148 | ||
| R | 76606 | 0.9139782 | ||
| S | 5 | 0.0000597 | ||
| X | 1120 | 0.0133626 | ||
| Y | 3 | 0.0000358 | ||
| A | 688 | D | 1 | 0.0000119 |
| G | 1 | 0.0000119 | ||
| S | 4 | 0.0000477 | ||
| T | 31 | 0.0003699 | ||
| V | 288 | 0.0034361 | ||
| X | 1718 | 0.0204973 | ||
| S | 704 | A | 1 | 0.0000119 |
| L | 1406 | 0.0167748 | ||
| P | 2 | 0.0000239 | ||
| T | 1 | 0.0000119 | ||
| X | 1834 | 0.0218813 | ||
| N | 764 | - | 1 | 0.0000119 |
| K | 81893 | 0.9770569 | ||
| R | 6 | 0.0000716 | ||
| T | 1 | 0.0000119 | ||
| X | 1834 | 0.0218813 | ||
| D | 796 | - | 1 | 0.0000119 |
| C | 1 | 0.0000119 | ||
| G | 1 | 0.0000119 | ||
| H | 21 | 0.0002505 | ||
| X | 2670 | 0.0318555 | ||
| Y | 81097 | 0.9675599 | ||
| S | 939 | F | 75471 | 0.9004367 |
| L | 4 | 0.0000477 | ||
| X | 2718 | 0.0324282 | ||
| Q | 954 | H | 81529 | 0.9727140 |
| L | 23 | 0.0002744 | ||
| R | 3 | 0.0000358 | ||
| X | 2141 | 0.0255440 | ||
| Y | 8 | 0.0000954 | ||
| N | 969 | K | 81924 | 0.9774267 |
| R | 1 | 0.0000119 | ||
| X | 1837 | 0.0219171 | ||
| H | 1058 | Q | 1 | 0.0000119 |
| X | 518 | 0.0061802 | ||
| Y | 359 | 0.0042832 | ||
| K | 1086 | E | 2 | 0.0000239 |
| Q | 1 | 0.0000119 | ||
| R | 369 | 0.0044025 | ||
| X | 358 | 0.0042713 | ||
| A | 1087 | S | 731 | 0.0087215 |
| T | 2 | 0.0000239 | ||
| X | 374 | 0.0044622 | ||
| V | 1104 | A | 1 | 0.0000119 |
| I | 6 | 0.0000716 | ||
| L | 1673 | 0.0199604 | ||
| X | 424 | 0.0050587 | ||
| P | 1143 | F | 116 | 0.0013840 |
| I | 6 | 0.0000716 | ||
| L | 77655 | 0.9264937 | ||
| R | 1 | 0.0000119 | ||
| S | 7 | 0.0000835 | ||
| X | 587 | 0.0070034 | ||
| E | 1150 | A | 1 | 0.0000119 |
| D | 3397 | 0.0405293 | ||
| K | 2 | 0.0000239 | ||
| V | 6 | 0.0000716 | ||
| X | 419 | 0.0049990 | ||
| Y | 1 | 0.0000119 | ||
| M | 1229 | - | 2 | 0.0000239 |
| I | 648 | 0.0077312 | ||
| T | 1 | 0.0000119 | ||
| V | 2 | 0.0000239 | ||
| X | 1892 | 0.0225733 | ||
| V | 1264 | A | 3 | 0.0000358 |
| L | 282 | 0.0033645 | ||
| M | 7 | 0.0000835 | ||
| X | 1495 | 0.0178367 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 2 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681-,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681-,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | United-Kingdom_England | 3 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | United-Kingdom_Scotland | 1 | 945 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Cuenca | 1 | 3 | 1425 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | China_Anhui | 1 | 180 | 3334 | Asia 15973 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | China_Shanxi | 1 | 135 | 3334 | Asia 15973 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69-,V70-,V127F,G142D,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Texas_San-Antonio | 2 | 436 | 3272 | 31822 | North-America 43842 |
| L | 5 | F | Q14X,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S31X,S50X,Q52X,F59X,S60X,A67X,H69X,V70X,V83X,V127X,G142X,Y144X,H146X,N148X,F157X,R158X,Q183X,N185X,F186X,N211X,L212X,V213X,L216X,H245N,A264X,I332V,G339H,R346X,K356X,L368X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477X,T478X,N481X,V483X,E484X,F486X,Q498X,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939X,Q954X,N969X,P1143L,M1229X,V1264X,D614G | USA_California | 1 | 7253 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445Y,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | USA_California | 1 | 7253 | 31822 | North-America 43842 | |
| L | 5 | F | T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356X,L368X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655X,Q677X,N679X,S680X,P681X,A688X,S704X,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Virginia | 1 | 1017 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621X,H655X,Q677X,N679X,S680X,P681X,A688X,S704X,N764X,D796X,S939F,Q954H,N969K,P1143L,D614X | Australia_New-South-Wales_Sydney | 3 | 288 | 288 | 2554 | Oceania 3136 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 10 | 3682 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Connecticut_New-Haven | 1 | 146 | 420 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,Q183H,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655X,N679K,P681R,N764K,D796X,S939F,Q954H,N969K,P1143L,M1229X,V1264X,D614G | USA_Connecticut_New-Haven | 1 | 146 | 420 | 31822 | North-America 43842 |
| L | 5 | F | T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245X,G252X,D253X,A264X,I332X,G339X,R346X,K356X,L368X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505X,P521X,E554X,A570V,P621S,H655Y,N679K,P681R,A688X,S704X,N764X,D796Y,S939F,Q954H,N969K,H1058X,P1143L,D614G | Colombia_Antioquia_san-pedro | 1 | 1 | 31 | 79 | South-America 3257 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 3682 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69-,V70-,V127F,G142D,Y144-,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Texas_San-Antonio | 1 | 436 | 3272 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Saskatchewan | 6 | 323 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 19 | 5335 | Asia 15973 | ||
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Poland_Malopolskie | 1 | 38 | 189 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Italy_Friuli-Venezia-Giulia_Gorizia | 1 | 18 | 43 | 573 | Europe 17006 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V83X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376X,R403X,D405X,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Poland_Dolnoslakie | 1 | 9 | 189 | Europe 17006 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S373F,S375A,T376-,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | France_Occitanie_Herault | 1 | 78 | 180 | 1460 | Europe 17006 |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69-,V70-,V127F,G142D,Y144X,F157S,R158G,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Washington_Clark | 1 | 1 | 536 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Puerto-Rico | 4 | 721 | North-America 43842 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N450D,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Brazil_Para_Belem | 1 | 8 | 63 | 1351 | South-America 3257 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408X,K417N,N440X,V445P,G446S,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Brazil_Amazonas_Manaus | 1 | 29 | 31 | 1351 | South-America 3257 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | USA_New-Jersey | 4 | 1660 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405X,R408X,K417X,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Hawaii_Honolulu | 1 | 631 | 900 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-Jersey | 9 | 1660 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,K417X,N440X,V445X,G446S,N450D,L452X,L455S,N460K,S477N,T478K,N481K,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 7253 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | Chile_Biobio_Coronel | 1 | 6 | 71 | 1188 | South-America 3257 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332X,G339X,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California_San-Diego | 1 | 227 | 7253 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31F,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 1 | 5335 | Asia 15973 | ||
| L | 5 | F | L5F,T19I,R21-,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 1 | 5335 | Asia 15973 | ||
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Alberta | 5 | 1722 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408N,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Occitanie_Haute-Garonne | 1 | 69 | 180 | 1460 | Europe 17006 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50X,H69-,V70-,V127F,G142D,Y144-,F157X,R158X,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371X,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455X,N460X,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 7253 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,Q14K,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Japan_Shiga | 1 | 158 | 4354 | Asia 15973 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27S,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655X,Q677X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104X,P1143X,E1150X,M1229X,V1264X,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 1 | 215 | Europe 17006 | ||
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50X,Q52X,F59X,S60X,A67X,H69X,V70X,V83X,V127F,G142D,Y144X,F157S,R158G,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655X,N679K,P681R,N764K,D796Y,S939X,Q954X,N969K,P1143L,D614G | USA_Ohio_Summit | 1 | 86 | 901 | 31822 | North-America 43842 |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,A475V,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Ohio_Lorain | 1 | 112 | 901 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Japan_Wakayama | 1 | 37 | 4354 | Asia 15973 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Japan_Saga | 1 | 35 | 4354 | Asia 15973 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | China_Hubei_Jingzhou | 1 | 58 | 830 | 3334 | Asia 15973 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,A67V,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | China_Hubei_Yichang | 1 | 60 | 830 | 3334 | Asia 15973 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 13 | 7253 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Australia_South-Australia | 2 | 626 | 2554 | Oceania 3136 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Bavaria | 1 | 321 | 1012 | Europe 17006 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Mississippi | 1 | 149 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50X,Q52X,F59X,S60X,A67X,H69X,V70X,V83X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,A1087S,P1143L,D614G | Germany_Bavaria | 1 | 321 | 1012 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27-,S50L,H69X,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245X,A264D,I332X,G339X,K356T,S371F,S373P,T376A,R403K,D405N,R408S,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Louisiana | 1 | 545 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679X,P681X,A688X,S704X,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California_City-and-of-San-Francisco | 1 | 41 | 7253 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445Y,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York | 1 | 5189 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York | 6 | 5189 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Nevada | 1 | 260 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Texas | 6 | 3272 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | Canada_British-Columbia | 10 | 2720 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69X,V70X,V83X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,M1229I,D614G | Canada_Ontario | 1 | 3682 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157X,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York_Livingston | 1 | 78 | 5189 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Colorado | 2 | 1512 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,P681R,N764K,D796Y,S939F,Q954H,N969K,A1087S,P1143L,D614G | USA_New-York_New-York-City | 1 | 640 | 5189 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York_New-York-City | 1 | 640 | 5189 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50X,Q52X,F59X,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505H,E554K,A570V,T572I,P621X,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,M1229I,D614X | Greece_Attica | 1 | 167 | 291 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50X,Q52X,F59X,S60X,A67X,H69X,V70X,V83X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Berlin | 1 | 85 | 1012 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356X,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Berlin | 1 | 85 | 1012 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Missouri | 1 | 70 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Minnesota | 1 | 854 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,A1087S,P1143L,D614G | USA_New-Jersey | 1 | 1660 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 7253 | 31822 | North-America 43842 | |
| L | 5 | F | T19I,R21T,L24-,P25-,P26-,A27S,S50X,Q52X,F59X,S60X,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,Q183E,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,L368X,S371X,S373X,S375X,T376X,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Rio-Grande-do-Sul | 1 | 29 | 1351 | South-America 3257 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California_San-Mateo | 1 | 465 | 7253 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Bourgogne-Franche-Comte_Trevenans | 1 | 5 | 98 | 1460 | Europe 17006 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Oklahoma | 1 | 42 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25-,P26-,A27-,S50L,H69-,V70-,V127F,G142D,Y144-,F186X,N211X,L212X,V213X,L216X,A222X,H245X,G252X,D253X,A264-,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Texas_San-Antonio | 1 | 436 | 3272 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California_Los-Angeles | 1 | 390 | 7253 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Africa_Western-Cape | 1 | 133 | 218 | Africa 602 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505X,P521X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Rhode-Island | 2 | 309 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_British-Columbia | 8 | 2720 | 10091 | North-America 43842 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50X,Q52X,F59X,S60X,A67X,H69X,V70X,V83X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505X,E554K,A570V,P621S,H655X,N679K,P681R,N764K,D796Y,S939X,Q954X,N969X,V1104X,P1143X,E1150X,D614G | Germany_Bavaria | 1 | 321 | 1012 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Georgia | 1 | 427 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264X,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Italy_Apulia | 1 | 31 | 573 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Ile-de-France_Saint-Denis | 2 | 58 | 161 | 1460 | Europe 17006 |
| L | 5 | F | T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V83X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,S375X,T376X,R403X,D405X,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,F490X,Q493X,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Oman_South-Sharqiyah | 1 | 4 | 108 | Asia 15973 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,Q183H,N211-,L212I,V213G,L216F,H245X,G252X,D253X,A264X,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Bavaria_Augsburg | 1 | 27 | 321 | 1012 | Europe 17006 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Munich | 1 | 52 | 1012 | Europe 17006 | |
| L | 5 | F | L5F,N17X,T19X,R21X,L24X,P25X,P26X,A27X,S50X,Q52X,F59X,S60X,A67X,H69X,V70X,V83X,V127F,G142D,Y144X,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 5449 | 7226 | Europe 17006 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Rio-de-Janeiro_Rio-de-Janeiro | 1 | 76 | 119 | 1351 | South-America 3257 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Texas_Houston | 8 | 2122 | 3272 | 31822 | North-America 43842 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Maryland | 1 | 183 | 31822 | North-America 43842 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1150D,D614G | USA_Texas_Houston | 1 | 2122 | 3272 | 31822 | North-America 43842 |
Download files to see full list
Previous page
last modified: Sun Jan 22 23:41 2023
GISAID data provided on this website is subject to GISAID's Terms and Conditions
Questions or comments? Contact us at seq-info@lanl.gov.
Questions or comments? Contact us at seq-info@lanl.gov.
