COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: May 28, 2023
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Collection dates: 2023-02-27 - 2023-05-27
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 284,425
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | - | 10 | 0.0000352 |
| F | 3190 | 0.0112156 | ||
| H | 2 | 0.0000070 | ||
| I | 6 | 0.0000211 | ||
| X | 7723 | 0.0271530 | ||
| T | 19 | - | 37 | 0.0001301 |
| A | 1 | 0.0000035 | ||
| G | 1 | 0.0000035 | ||
| I | 272946 | 0.9596414 | ||
| L | 429 | 0.0015083 | ||
| M | 2 | 0.0000070 | ||
| R | 255 | 0.0008965 | ||
| V | 84 | 0.0002953 | ||
| X | 8555 | 0.0300782 | ||
| L | 24 | - | 270165 | 0.9498638 |
| F | 3 | 0.0000105 | ||
| S | 281 | 0.0009880 | ||
| T | 4 | 0.0000141 | ||
| V | 2 | 0.0000070 | ||
| X | 11436 | 0.0402074 | ||
| P | 25 | - | 270628 | 0.9514916 |
| D | 1 | 0.0000035 | ||
| F | 11 | 0.0000387 | ||
| H | 57 | 0.0002004 | ||
| S | 1149 | 0.0040397 | ||
| T | 8 | 0.0000281 | ||
| X | 11675 | 0.0410477 | ||
| Y | 14 | 0.0000492 | ||
| P | 26 | - | 271592 | 0.9548809 |
| H | 1 | 0.0000035 | ||
| L | 1 | 0.0000035 | ||
| S | 2 | 0.0000070 | ||
| T | 7 | 0.0000246 | ||
| X | 10767 | 0.0378553 | ||
| A | 27 | - | 1508 | 0.0053019 |
| R | 1 | 0.0000035 | ||
| S | 270246 | 0.9501485 | ||
| X | 10548 | 0.0370853 | ||
| T | 51 | - | 43 | 0.0001512 |
| A | 3 | 0.0000105 | ||
| I | 920 | 0.0032346 | ||
| N | 7 | 0.0000246 | ||
| P | 1 | 0.0000035 | ||
| S | 1 | 0.0000035 | ||
| X | 9744 | 0.0342586 | ||
| Q | 52 | - | 60 | 0.0002110 |
| E | 8 | 0.0000281 | ||
| H | 672 | 0.0023627 | ||
| K | 14 | 0.0000492 | ||
| L | 7 | 0.0000246 | ||
| R | 150 | 0.0005274 | ||
| V | 1 | 0.0000035 | ||
| X | 10800 | 0.0379713 | ||
| H | 69 | - | 27891 | 0.0980610 |
| A | 1 | 0.0000035 | ||
| D | 2 | 0.0000070 | ||
| E | 1 | 0.0000035 | ||
| F | 74 | 0.0002602 | ||
| L | 23 | 0.0000809 | ||
| N | 2 | 0.0000070 | ||
| P | 1 | 0.0000035 | ||
| Q | 1 | 0.0000035 | ||
| R | 3 | 0.0000105 | ||
| S | 16 | 0.0000563 | ||
| T | 1 | 0.0000035 | ||
| X | 9031 | 0.0317518 | ||
| Y | 255 | 0.0008965 | ||
| V | 70 | - | 28085 | 0.0987431 |
| A | 72 | 0.0002531 | ||
| F | 164 | 0.0005766 | ||
| G | 9 | 0.0000316 | ||
| I | 38 | 0.0001336 | ||
| L | 19 | 0.0000668 | ||
| W | 1 | 0.0000035 | ||
| X | 8944 | 0.0314459 | ||
| V | 83 | - | 76 | 0.0002672 |
| A | 215344 | 0.7571205 | ||
| D | 3 | 0.0000105 | ||
| F | 152 | 0.0005344 | ||
| I | 6 | 0.0000211 | ||
| K | 1 | 0.0000035 | ||
| L | 4 | 0.0000141 | ||
| P | 60 | 0.0002110 | ||
| S | 82 | 0.0002883 | ||
| T | 12 | 0.0000422 | ||
| X | 11661 | 0.0409985 | ||
| G | 142 | - | 413 | 0.0014521 |
| A | 9 | 0.0000316 | ||
| D | 270658 | 0.9515971 | ||
| E | 4 | 0.0000141 | ||
| H | 1 | 0.0000035 | ||
| K | 1 | 0.0000035 | ||
| N | 5 | 0.0000176 | ||
| Q | 5 | 0.0000176 | ||
| X | 10177 | 0.0357810 | ||
| Y | 16 | 0.0000563 | ||
| Y | 144 | - | 209838 | 0.7377622 |
| C | 3 | 0.0000105 | ||
| D | 2 | 0.0000070 | ||
| F | 38 | 0.0001336 | ||
| H | 2 | 0.0000070 | ||
| K | 31 | 0.0001090 | ||
| L | 2 | 0.0000070 | ||
| N | 4 | 0.0000141 | ||
| Q | 131 | 0.0004606 | ||
| S | 3 | 0.0000105 | ||
| X | 20690 | 0.0727433 | ||
| Y | 145 | - | 522 | 0.0018353 |
| C | 4 | 0.0000141 | ||
| D | 6 | 0.0000211 | ||
| H | 162 | 0.0005696 | ||
| I | 1 | 0.0000035 | ||
| K | 169 | 0.0005942 | ||
| L | 75 | 0.0002637 | ||
| N | 15 | 0.0000527 | ||
| P | 110 | 0.0003867 | ||
| Q | 281 | 0.0009880 | ||
| R | 12 | 0.0000422 | ||
| S | 2 | 0.0000070 | ||
| X | 12859 | 0.0452105 | ||
| H | 146 | - | 5368 | 0.0188732 |
| C | 1 | 0.0000035 | ||
| E | 24 | 0.0000844 | ||
| I | 1 | 0.0000035 | ||
| K | 10541 | 0.0370607 | ||
| L | 85 | 0.0002988 | ||
| N | 57 | 0.0002004 | ||
| P | 5 | 0.0000176 | ||
| Q | 203434 | 0.7152466 | ||
| R | 8 | 0.0000281 | ||
| V | 2 | 0.0000070 | ||
| X | 7646 | 0.0268823 | ||
| Y | 36 | 0.0001266 | ||
| K | 147 | - | 152 | 0.0005344 |
| D | 6 | 0.0000211 | ||
| E | 26436 | 0.0929454 | ||
| I | 1144 | 0.0040221 | ||
| N | 320 | 0.0011251 | ||
| Q | 152 | 0.0005344 | ||
| R | 2 | 0.0000070 | ||
| T | 3 | 0.0000105 | ||
| V | 1 | 0.0000035 | ||
| X | 6110 | 0.0214819 | ||
| Y | 2 | 0.0000070 | ||
| W | 152 | - | 21 | 0.0000738 |
| C | 1 | 0.0000035 | ||
| G | 6 | 0.0000211 | ||
| L | 388 | 0.0013642 | ||
| Q | 42 | 0.0001477 | ||
| R | 26183 | 0.0920559 | ||
| S | 2 | 0.0000070 | ||
| X | 6389 | 0.0224629 | ||
| M | 153 | - | 24 | 0.0000844 |
| G | 1 | 0.0000035 | ||
| I | 886 | 0.0031151 | ||
| K | 3 | 0.0000105 | ||
| R | 1 | 0.0000035 | ||
| T | 440 | 0.0015470 | ||
| V | 151 | 0.0005309 | ||
| X | 6412 | 0.0225437 | ||
| E | 156 | - | 22 | 0.0000773 |
| A | 21 | 0.0000738 | ||
| D | 12 | 0.0000422 | ||
| G | 1334 | 0.0046902 | ||
| K | 11 | 0.0000387 | ||
| Q | 155 | 0.0005450 | ||
| V | 42 | 0.0001477 | ||
| X | 6634 | 0.0233243 | ||
| F | 157 | - | 1345 | 0.0047288 |
| A | 1 | 0.0000035 | ||
| C | 1 | 0.0000035 | ||
| L | 27882 | 0.0980294 | ||
| S | 220 | 0.0007735 | ||
| V | 2 | 0.0000070 | ||
| W | 1 | 0.0000035 | ||
| X | 7211 | 0.0253529 | ||
| Y | 4 | 0.0000141 | ||
| R | 158 | - | 1348 | 0.0047394 |
| E | 1 | 0.0000035 | ||
| G | 26 | 0.0000914 | ||
| I | 1 | 0.0000035 | ||
| K | 5 | 0.0000176 | ||
| L | 1 | 0.0000035 | ||
| S | 43 | 0.0001512 | ||
| T | 7 | 0.0000246 | ||
| X | 7228 | 0.0254127 | ||
| L | 176 | - | 14 | 0.0000492 |
| F | 1491 | 0.0052422 | ||
| H | 2 | 0.0000070 | ||
| I | 12 | 0.0000422 | ||
| P | 11 | 0.0000387 | ||
| X | 11530 | 0.0405379 | ||
| E | 180 | - | 16 | 0.0000563 |
| A | 5 | 0.0000176 | ||
| D | 13 | 0.0000457 | ||
| G | 24 | 0.0000844 | ||
| K | 43 | 0.0001512 | ||
| L | 2 | 0.0000070 | ||
| Q | 95 | 0.0003340 | ||
| V | 15688 | 0.0551569 | ||
| X | 11452 | 0.0402637 | ||
| K | 182 | - | 111 | 0.0003903 |
| E | 475 | 0.0016700 | ||
| I | 141 | 0.0004957 | ||
| N | 888 | 0.0031221 | ||
| Q | 7 | 0.0000246 | ||
| R | 129 | 0.0004535 | ||
| T | 36 | 0.0001266 | ||
| X | 9303 | 0.0327081 | ||
| Q | 183 | - | 18 | 0.0000633 |
| A | 2 | 0.0000070 | ||
| D | 45 | 0.0001582 | ||
| E | 217716 | 0.7654601 | ||
| G | 7 | 0.0000246 | ||
| H | 43 | 0.0001512 | ||
| K | 35 | 0.0001231 | ||
| L | 23 | 0.0000809 | ||
| P | 22 | 0.0000773 | ||
| R | 86 | 0.0003024 | ||
| V | 7 | 0.0000246 | ||
| X | 10524 | 0.0370010 | ||
| G | 184 | - | 20 | 0.0000703 |
| A | 1 | 0.0000035 | ||
| D | 133 | 0.0004676 | ||
| E | 1 | 0.0000035 | ||
| S | 318 | 0.0011180 | ||
| V | 1681 | 0.0059102 | ||
| X | 9259 | 0.0325534 | ||
| N | 185 | - | 13 | 0.0000457 |
| A | 1 | 0.0000035 | ||
| D | 5385 | 0.0189329 | ||
| H | 12 | 0.0000422 | ||
| I | 114 | 0.0004008 | ||
| K | 10 | 0.0000352 | ||
| S | 114 | 0.0004008 | ||
| T | 57 | 0.0002004 | ||
| X | 9057 | 0.0318432 | ||
| Y | 41 | 0.0001442 | ||
| F | 186 | - | 120 | 0.0004219 |
| C | 2 | 0.0000070 | ||
| I | 3 | 0.0000105 | ||
| L | 532 | 0.0018704 | ||
| S | 205 | 0.0007208 | ||
| V | 13 | 0.0000457 | ||
| X | 9038 | 0.0317764 | ||
| Y | 17 | 0.0000598 | ||
| Y | 200 | - | 15 | 0.0000527 |
| C | 1218 | 0.0042823 | ||
| H | 17 | 0.0000598 | ||
| S | 1 | 0.0000035 | ||
| V | 2 | 0.0000070 | ||
| W | 2 | 0.0000070 | ||
| X | 7451 | 0.0261967 | ||
| P | 209 | - | 15 | 0.0000527 |
| H | 5 | 0.0000176 | ||
| L | 1241 | 0.0043632 | ||
| R | 2 | 0.0000070 | ||
| S | 28 | 0.0000984 | ||
| T | 3 | 0.0000105 | ||
| X | 7151 | 0.0251420 | ||
| I | 210 | - | 96 | 0.0003375 |
| A | 32 | 0.0001125 | ||
| F | 15 | 0.0000527 | ||
| S | 4 | 0.0000141 | ||
| T | 64 | 0.0002250 | ||
| V | 25116 | 0.0883045 | ||
| X | 7263 | 0.0255357 | ||
| L | 212 | - | 326 | 0.0011462 |
| E | 31 | 0.0001090 | ||
| F | 5 | 0.0000176 | ||
| G | 68 | 0.0002391 | ||
| I | 51 | 0.0001793 | ||
| S | 1220 | 0.0042894 | ||
| X | 7301 | 0.0256693 | ||
| V | 213 | - | 419 | 0.0014731 |
| A | 4 | 0.0000141 | ||
| D | 81 | 0.0002848 | ||
| E | 220472 | 0.7751499 | ||
| G | 53237 | 0.1871741 | ||
| I | 2 | 0.0000070 | ||
| K | 2 | 0.0000070 | ||
| N | 2 | 0.0000070 | ||
| Q | 5 | 0.0000176 | ||
| R | 16 | 0.0000563 | ||
| T | 1 | 0.0000035 | ||
| W | 6 | 0.0000211 | ||
| X | 7756 | 0.0272691 | ||
| D | 215 | - | 19 | 0.0000668 |
| A | 8 | 0.0000281 | ||
| E | 6 | 0.0000211 | ||
| G | 1413 | 0.0049679 | ||
| H | 2651 | 0.0093206 | ||
| N | 37 | 0.0001301 | ||
| S | 4 | 0.0000141 | ||
| V | 112 | 0.0003938 | ||
| X | 6966 | 0.0244915 | ||
| Y | 167 | 0.0005871 | ||
| A | 222 | - | 19 | 0.0000668 |
| F | 2 | 0.0000070 | ||
| I | 1 | 0.0000035 | ||
| K | 1 | 0.0000035 | ||
| P | 3 | 0.0000105 | ||
| S | 132 | 0.0004641 | ||
| T | 27 | 0.0000949 | ||
| V | 1346 | 0.0047324 | ||
| X | 6667 | 0.0234403 | ||
| A | 243 | - | 1114 | 0.0039167 |
| D | 1 | 0.0000035 | ||
| G | 1 | 0.0000035 | ||
| S | 21 | 0.0000738 | ||
| T | 1 | 0.0000035 | ||
| V | 15 | 0.0000527 | ||
| X | 51172 | 0.1799139 | ||
| Y | 1 | 0.0000035 | ||
| L | 244 | - | 1181 | 0.0041522 |
| F | 30 | 0.0001055 | ||
| N | 1 | 0.0000035 | ||
| S | 7 | 0.0000246 | ||
| V | 2 | 0.0000070 | ||
| X | 50651 | 0.1780821 | ||
| H | 245 | - | 58 | 0.0002039 |
| D | 4 | 0.0000141 | ||
| N | 652 | 0.0022923 | ||
| P | 1 | 0.0000035 | ||
| Q | 6 | 0.0000211 | ||
| R | 36 | 0.0001266 | ||
| X | 50416 | 0.1772559 | ||
| Y | 540 | 0.0018986 | ||
| Y | 248 | - | 360 | 0.0012657 |
| C | 1 | 0.0000035 | ||
| D | 899 | 0.0031608 | ||
| F | 2 | 0.0000070 | ||
| G | 2 | 0.0000070 | ||
| H | 254 | 0.0008930 | ||
| I | 1 | 0.0000035 | ||
| L | 1 | 0.0000035 | ||
| N | 37 | 0.0001301 | ||
| S | 367 | 0.0012903 | ||
| X | 50329 | 0.1769500 | ||
| G | 252 | - | 37 | 0.0001301 |
| A | 8 | 0.0000281 | ||
| D | 36 | 0.0001266 | ||
| I | 51 | 0.0001793 | ||
| S | 22 | 0.0000773 | ||
| V | 168510 | 0.5924585 | ||
| X | 52201 | 0.1835317 | ||
| D | 253 | - | 138 | 0.0004852 |
| A | 18 | 0.0000633 | ||
| E | 18 | 0.0000633 | ||
| G | 6790 | 0.0238727 | ||
| I | 1 | 0.0000035 | ||
| N | 10 | 0.0000352 | ||
| S | 5 | 0.0000176 | ||
| V | 18 | 0.0000633 | ||
| X | 52031 | 0.1829340 | ||
| Y | 41 | 0.0001442 | ||
| S | 256 | - | 41 | 0.0001442 |
| A | 8 | 0.0000281 | ||
| L | 1591 | 0.0055937 | ||
| P | 100 | 0.0003516 | ||
| T | 2 | 0.0000070 | ||
| X | 53160 | 0.1869034 | ||
| G | 257 | - | 329 | 0.0011567 |
| C | 2 | 0.0000070 | ||
| D | 1028 | 0.0036143 | ||
| H | 1 | 0.0000035 | ||
| R | 12 | 0.0000422 | ||
| S | 26046 | 0.0915742 | ||
| T | 1 | 0.0000035 | ||
| V | 26 | 0.0000914 | ||
| X | 53274 | 0.1873042 | ||
| Y | 1 | 0.0000035 | ||
| T | 323 | - | 47 | 0.0001652 |
| A | 58 | 0.0002039 | ||
| G | 1 | 0.0000035 | ||
| I | 2215 | 0.0077876 | ||
| K | 42 | 0.0001477 | ||
| R | 84 | 0.0002953 | ||
| S | 1 | 0.0000035 | ||
| X | 15869 | 0.0557933 | ||
| G | 339 | - | 38 | 0.0001336 |
| D | 28531 | 0.1003112 | ||
| H | 241500 | 0.8490815 | ||
| K | 1 | 0.0000035 | ||
| L | 4 | 0.0000141 | ||
| N | 42 | 0.0001477 | ||
| P | 3 | 0.0000105 | ||
| Q | 7 | 0.0000246 | ||
| R | 33 | 0.0001160 | ||
| V | 6 | 0.0000211 | ||
| X | 12482 | 0.0438850 | ||
| Y | 82 | 0.0002883 | ||
| R | 346 | - | 303 | 0.0010653 |
| A | 17 | 0.0000598 | ||
| G | 2 | 0.0000070 | ||
| I | 186 | 0.0006540 | ||
| K | 86 | 0.0003024 | ||
| N | 2 | 0.0000070 | ||
| S | 713 | 0.0025068 | ||
| T | 259003 | 0.9106197 | ||
| W | 1 | 0.0000035 | ||
| X | 13729 | 0.0482693 | ||
| A | 348 | - | 51 | 0.0001793 |
| E | 1 | 0.0000035 | ||
| L | 2 | 0.0000070 | ||
| N | 1 | 0.0000035 | ||
| P | 10 | 0.0000352 | ||
| Q | 2 | 0.0000070 | ||
| R | 1 | 0.0000035 | ||
| S | 261 | 0.0009176 | ||
| T | 501 | 0.0017614 | ||
| V | 82 | 0.0002883 | ||
| X | 13280 | 0.0466907 | ||
| K | 356 | - | 25 | 0.0000879 |
| E | 15 | 0.0000527 | ||
| F | 1 | 0.0000035 | ||
| M | 2 | 0.0000070 | ||
| N | 65 | 0.0002285 | ||
| R | 9 | 0.0000316 | ||
| T | 8270 | 0.0290762 | ||
| X | 16131 | 0.0567144 | ||
| L | 368 | - | 25 | 0.0000879 |
| I | 209531 | 0.7366828 | ||
| M | 5 | 0.0000176 | ||
| P | 1 | 0.0000035 | ||
| T | 1 | 0.0000035 | ||
| V | 25 | 0.0000879 | ||
| X | 18501 | 0.0650470 | ||
| S | 371 | - | 28 | 0.0000984 |
| F | 264059 | 0.9283959 | ||
| G | 1 | 0.0000035 | ||
| L | 55 | 0.0001934 | ||
| X | 19402 | 0.0682148 | ||
| S | 373 | - | 30 | 0.0001055 |
| A | 1 | 0.0000035 | ||
| C | 1 | 0.0000035 | ||
| F | 23 | 0.0000809 | ||
| L | 2 | 0.0000070 | ||
| P | 264514 | 0.9299956 | ||
| Q | 3 | 0.0000105 | ||
| T | 4 | 0.0000141 | ||
| X | 19211 | 0.0675433 | ||
| S | 375 | - | 69 | 0.0002426 |
| A | 85 | 0.0002988 | ||
| C | 2 | 0.0000070 | ||
| F | 262926 | 0.9244124 | ||
| L | 1 | 0.0000035 | ||
| X | 19800 | 0.0696141 | ||
| Y | 4 | 0.0000141 | ||
| T | 376 | - | 224 | 0.0007876 |
| A | 262811 | 0.9240081 | ||
| D | 1 | 0.0000035 | ||
| E | 1 | 0.0000035 | ||
| I | 1 | 0.0000035 | ||
| L | 3 | 0.0000105 | ||
| N | 1 | 0.0000035 | ||
| P | 2 | 0.0000070 | ||
| V | 8 | 0.0000281 | ||
| X | 20258 | 0.0712244 | ||
| D | 405 | - | 59 | 0.0002074 |
| N | 266677 | 0.9376004 | ||
| S | 4 | 0.0000141 | ||
| X | 16926 | 0.0595095 | ||
| Y | 3 | 0.0000105 | ||
| R | 408 | - | 49 | 0.0001723 |
| A | 1 | 0.0000035 | ||
| C | 1 | 0.0000035 | ||
| F | 1 | 0.0000035 | ||
| G | 96 | 0.0003375 | ||
| I | 12 | 0.0000422 | ||
| N | 76 | 0.0002672 | ||
| S | 253045 | 0.8896721 | ||
| T | 1 | 0.0000035 | ||
| X | 24257 | 0.0852843 | ||
| I | 410 | - | 47 | 0.0001652 |
| D | 1 | 0.0000035 | ||
| L | 2 | 0.0000070 | ||
| V | 1274 | 0.0044792 | ||
| X | 27687 | 0.0973438 | ||
| K | 417 | - | 49 | 0.0001723 |
| A | 2 | 0.0000070 | ||
| D | 7 | 0.0000246 | ||
| H | 1 | 0.0000035 | ||
| I | 7 | 0.0000246 | ||
| L | 2 | 0.0000070 | ||
| N | 248467 | 0.8735765 | ||
| S | 29 | 0.0001020 | ||
| T | 22 | 0.0000773 | ||
| V | 1 | 0.0000035 | ||
| X | 30925 | 0.1087281 | ||
| N | 440 | - | 45 | 0.0001582 |
| E | 3 | 0.0000105 | ||
| K | 263482 | 0.9263672 | ||
| P | 2 | 0.0000070 | ||
| R | 62 | 0.0002180 | ||
| V | 1 | 0.0000035 | ||
| X | 19610 | 0.0689461 | ||
| K | 444 | - | 56 | 0.0001969 |
| C | 1 | 0.0000035 | ||
| E | 2 | 0.0000070 | ||
| F | 1 | 0.0000035 | ||
| M | 141 | 0.0004957 | ||
| N | 504 | 0.0017720 | ||
| Q | 2 | 0.0000070 | ||
| R | 598 | 0.0021025 | ||
| S | 1 | 0.0000035 | ||
| T | 31401 | 0.1104017 | ||
| X | 17775 | 0.0624945 | ||
| V | 445 | - | 53 | 0.0001863 |
| A | 640 | 0.0022502 | ||
| F | 28 | 0.0000984 | ||
| G | 1 | 0.0000035 | ||
| H | 7 | 0.0000246 | ||
| I | 2 | 0.0000070 | ||
| L | 68 | 0.0002391 | ||
| P | 208125 | 0.7317395 | ||
| S | 331 | 0.0011638 | ||
| T | 4 | 0.0000141 | ||
| X | 19694 | 0.0692415 | ||
| G | 446 | - | 42 | 0.0001477 |
| A | 1 | 0.0000035 | ||
| D | 390 | 0.0013712 | ||
| F | 1 | 0.0000035 | ||
| I | 84 | 0.0002953 | ||
| N | 44 | 0.0001547 | ||
| R | 99 | 0.0003481 | ||
| S | 236363 | 0.8310205 | ||
| T | 20 | 0.0000703 | ||
| V | 29 | 0.0001020 | ||
| X | 19253 | 0.0676910 | ||
| L | 452 | - | 43 | 0.0001512 |
| K | 1 | 0.0000035 | ||
| M | 903 | 0.0031748 | ||
| Q | 45 | 0.0001582 | ||
| R | 42765 | 0.1503560 | ||
| S | 1 | 0.0000035 | ||
| V | 3 | 0.0000105 | ||
| W | 3 | 0.0000105 | ||
| X | 16352 | 0.0574914 | ||
| Y | 453 | - | 46 | 0.0001617 |
| F | 317 | 0.0011145 | ||
| H | 17 | 0.0000598 | ||
| S | 1 | 0.0000035 | ||
| X | 16804 | 0.0590806 | ||
| F | 456 | - | 45 | 0.0001582 |
| L | 3375 | 0.0118660 | ||
| V | 2 | 0.0000070 | ||
| X | 17059 | 0.0599771 | ||
| N | 460 | - | 51 | 0.0001793 |
| H | 2 | 0.0000070 | ||
| I | 5 | 0.0000176 | ||
| K | 255082 | 0.8968340 | ||
| M | 11 | 0.0000387 | ||
| Q | 1 | 0.0000035 | ||
| R | 7 | 0.0000246 | ||
| S | 13 | 0.0000457 | ||
| T | 1 | 0.0000035 | ||
| X | 17585 | 0.0618265 | ||
| Y | 5 | 0.0000176 | ||
| S | 477 | - | 131 | 0.0004606 |
| D | 8 | 0.0000281 | ||
| K | 16 | 0.0000563 | ||
| N | 268478 | 0.9439325 | ||
| X | 13002 | 0.0457133 | ||
| Y | 1 | 0.0000035 | ||
| T | 478 | - | 119 | 0.0004184 |
| E | 65 | 0.0002285 | ||
| G | 1 | 0.0000035 | ||
| I | 186 | 0.0006540 | ||
| K | 250437 | 0.8805028 | ||
| N | 348 | 0.0012235 | ||
| Q | 227 | 0.0007981 | ||
| R | 17973 | 0.0631906 | ||
| X | 13226 | 0.0465008 | ||
| E | 484 | - | 134 | 0.0004711 |
| A | 268471 | 0.9439079 | ||
| K | 5 | 0.0000176 | ||
| P | 11 | 0.0000387 | ||
| R | 419 | 0.0014731 | ||
| S | 42 | 0.0001477 | ||
| T | 41 | 0.0001442 | ||
| V | 126 | 0.0004430 | ||
| X | 13670 | 0.0480619 | ||
| F | 486 | - | 128 | 0.0004500 |
| A | 187 | 0.0006575 | ||
| E | 1 | 0.0000035 | ||
| H | 3 | 0.0000105 | ||
| I | 519 | 0.0018247 | ||
| L | 304 | 0.0010688 | ||
| P | 214995 | 0.7558935 | ||
| Q | 1 | 0.0000035 | ||
| S | 16646 | 0.0585251 | ||
| V | 27505 | 0.0967039 | ||
| X | 13758 | 0.0483713 | ||
| Y | 1 | 0.0000035 | ||
| F | 490 | - | 122 | 0.0004289 |
| A | 6 | 0.0000211 | ||
| H | 1 | 0.0000035 | ||
| I | 1 | 0.0000035 | ||
| L | 4 | 0.0000141 | ||
| P | 512 | 0.0018001 | ||
| S | 226009 | 0.7946172 | ||
| T | 2 | 0.0000070 | ||
| V | 7 | 0.0000246 | ||
| X | 11974 | 0.0420990 | ||
| Y | 15 | 0.0000527 | ||
| Q | 493 | - | 114 | 0.0004008 |
| E | 9 | 0.0000316 | ||
| H | 4 | 0.0000141 | ||
| K | 10 | 0.0000352 | ||
| L | 198 | 0.0006961 | ||
| R | 78 | 0.0002742 | ||
| T | 1 | 0.0000035 | ||
| X | 10765 | 0.0378483 | ||
| Y | 2 | 0.0000070 | ||
| S | 494 | - | 128 | 0.0004500 |
| A | 1 | 0.0000035 | ||
| L | 5 | 0.0000176 | ||
| P | 1072 | 0.0037690 | ||
| T | 2 | 0.0000070 | ||
| X | 10720 | 0.0376901 | ||
| Q | 498 | - | 130 | 0.0004571 |
| E | 1 | 0.0000035 | ||
| H | 2 | 0.0000070 | ||
| L | 26 | 0.0000914 | ||
| R | 271348 | 0.9540230 | ||
| X | 12174 | 0.0428021 | ||
| N | 501 | - | 150 | 0.0005274 |
| F | 1 | 0.0000035 | ||
| H | 1 | 0.0000035 | ||
| L | 1 | 0.0000035 | ||
| X | 12055 | 0.0423838 | ||
| Y | 271690 | 0.9552255 | ||
| Y | 505 | - | 139 | 0.0004887 |
| H | 269325 | 0.9469104 | ||
| N | 1 | 0.0000035 | ||
| Q | 1 | 0.0000035 | ||
| R | 1 | 0.0000035 | ||
| X | 13816 | 0.0485752 | ||
| P | 521 | - | 155 | 0.0005450 |
| A | 3 | 0.0000105 | ||
| F | 1 | 0.0000035 | ||
| I | 1 | 0.0000035 | ||
| L | 12 | 0.0000422 | ||
| Q | 45 | 0.0001582 | ||
| R | 7 | 0.0000246 | ||
| S | 7481 | 0.0263022 | ||
| T | 545 | 0.0019161 | ||
| X | 12293 | 0.0432205 | ||
| T | 547 | - | 6 | 0.0000211 |
| A | 4 | 0.0000141 | ||
| I | 4428 | 0.0155683 | ||
| K | 452 | 0.0015892 | ||
| R | 5 | 0.0000176 | ||
| S | 4 | 0.0000141 | ||
| X | 2619 | 0.0092081 | ||
| E | 554 | - | 11 | 0.0000387 |
| A | 49 | 0.0001723 | ||
| D | 48 | 0.0001688 | ||
| G | 69 | 0.0002426 | ||
| K | 993 | 0.0034913 | ||
| Q | 113 | 0.0003973 | ||
| V | 53 | 0.0001863 | ||
| X | 2105 | 0.0074009 | ||
| T | 573 | A | 1 | 0.0000035 |
| I | 2489 | 0.0087510 | ||
| X | 855 | 0.0030061 | ||
| E | 583 | A | 9 | 0.0000316 |
| D | 634 | 0.0022291 | ||
| G | 4 | 0.0000141 | ||
| K | 33 | 0.0001160 | ||
| Q | 191 | 0.0006715 | ||
| V | 8 | 0.0000281 | ||
| X | 2038 | 0.0071653 | ||
| Q | 613 | - | 1 | 0.0000035 |
| E | 8 | 0.0000281 | ||
| H | 11152 | 0.0392089 | ||
| L | 3 | 0.0000105 | ||
| N | 1 | 0.0000035 | ||
| R | 2 | 0.0000070 | ||
| X | 1978 | 0.0069544 | ||
| Y | 1 | 0.0000035 | ||
| P | 621 | - | 3 | 0.0000105 |
| A | 77 | 0.0002707 | ||
| H | 54 | 0.0001899 | ||
| L | 36 | 0.0001266 | ||
| R | 12 | 0.0000422 | ||
| S | 1938 | 0.0068137 | ||
| T | 8 | 0.0000281 | ||
| X | 1988 | 0.0069895 | ||
| H | 655 | - | 1 | 0.0000035 |
| D | 1 | 0.0000035 | ||
| F | 8 | 0.0000281 | ||
| X | 2589 | 0.0091026 | ||
| Y | 281597 | 0.9900571 | ||
| I | 666 | L | 2 | 0.0000070 |
| N | 1 | 0.0000035 | ||
| V | 1096 | 0.0038534 | ||
| X | 2554 | 0.0089795 | ||
| Q | 675 | E | 2 | 0.0000070 |
| H | 1073 | 0.0037725 | ||
| K | 275 | 0.0009669 | ||
| L | 52 | 0.0001828 | ||
| P | 2 | 0.0000070 | ||
| R | 28 | 0.0000984 | ||
| X | 2306 | 0.0081076 | ||
| N | 679 | - | 3 | 0.0000105 |
| K | 281394 | 0.9893434 | ||
| M | 1 | 0.0000035 | ||
| Q | 1 | 0.0000035 | ||
| R | 102 | 0.0003586 | ||
| X | 2487 | 0.0087440 | ||
| P | 681 | - | 2 | 0.0000070 |
| D | 1 | 0.0000035 | ||
| H | 281092 | 0.9882816 | ||
| L | 5 | 0.0000176 | ||
| N | 2 | 0.0000070 | ||
| R | 173 | 0.0006082 | ||
| X | 2616 | 0.0091975 | ||
| Y | 58 | 0.0002039 | ||
| A | 701 | - | 7 | 0.0000246 |
| E | 4 | 0.0000141 | ||
| G | 1 | 0.0000035 | ||
| P | 1 | 0.0000035 | ||
| S | 47 | 0.0001652 | ||
| T | 36 | 0.0001266 | ||
| V | 1079 | 0.0037936 | ||
| X | 7180 | 0.0252439 | ||
| N | 703 | - | 10 | 0.0000352 |
| D | 6 | 0.0000211 | ||
| H | 2 | 0.0000070 | ||
| I | 1109 | 0.0038991 | ||
| K | 27 | 0.0000949 | ||
| S | 380 | 0.0013360 | ||
| T | 2 | 0.0000070 | ||
| W | 1 | 0.0000035 | ||
| X | 7303 | 0.0256764 | ||
| Y | 56 | 0.0001969 | ||
| S | 704 | - | 2 | 0.0000070 |
| A | 8 | 0.0000281 | ||
| L | 843 | 0.0029639 | ||
| P | 5 | 0.0000176 | ||
| T | 41 | 0.0001442 | ||
| X | 7263 | 0.0255357 | ||
| N | 764 | - | 2 | 0.0000070 |
| K | 276244 | 0.9712367 | ||
| Q | 3 | 0.0000105 | ||
| R | 9 | 0.0000316 | ||
| T | 1 | 0.0000035 | ||
| X | 7558 | 0.0265729 | ||
| D | 796 | - | 4 | 0.0000141 |
| C | 5 | 0.0000176 | ||
| F | 6 | 0.0000211 | ||
| H | 196 | 0.0006891 | ||
| X | 6270 | 0.0220445 | ||
| Y | 277452 | 0.9754839 | ||
| L | 858 | - | 12 | 0.0000422 |
| I | 1340 | 0.0047113 | ||
| P | 1 | 0.0000035 | ||
| V | 1 | 0.0000035 | ||
| X | 3846 | 0.0135220 | ||
| T | 883 | - | 1 | 0.0000035 |
| I | 3290 | 0.0115672 | ||
| S | 5 | 0.0000176 | ||
| X | 3487 | 0.0122598 | ||
| Q | 954 | - | 1 | 0.0000035 |
| D | 6 | 0.0000211 | ||
| E | 1 | 0.0000035 | ||
| H | 281143 | 0.9884609 | ||
| L | 16 | 0.0000563 | ||
| N | 4 | 0.0000141 | ||
| R | 2 | 0.0000070 | ||
| X | 2268 | 0.0079740 | ||
| Y | 95 | 0.0003340 | ||
| N | 969 | - | 4 | 0.0000141 |
| K | 281930 | 0.9912279 | ||
| R | 1 | 0.0000035 | ||
| T | 2 | 0.0000070 | ||
| X | 2206 | 0.0077560 | ||
| K | 1045 | E | 6 | 0.0000211 |
| N | 23 | 0.0000809 | ||
| Q | 1 | 0.0000035 | ||
| R | 2103 | 0.0073939 | ||
| T | 4 | 0.0000141 | ||
| X | 1124 | 0.0039518 | ||
| G | 1124 | A | 21 | 0.0000738 |
| C | 15 | 0.0000527 | ||
| D | 30 | 0.0001055 | ||
| S | 31 | 0.0001090 | ||
| V | 1119 | 0.0039343 | ||
| X | 2405 | 0.0084557 | ||
| P | 1162 | - | 1 | 0.0000035 |
| A | 7 | 0.0000246 | ||
| L | 556 | 0.0019548 | ||
| Q | 14 | 0.0000492 | ||
| R | 9 | 0.0000316 | ||
| S | 808 | 0.0028408 | ||
| T | 4 | 0.0000141 | ||
| X | 921 | 0.0032381 | ||
| C | 1243 | - | 19 | 0.0000668 |
| F | 2144 | 0.0075380 | ||
| R | 4 | 0.0000141 | ||
| S | 1 | 0.0000035 | ||
| W | 1 | 0.0000035 | ||
| X | 1377 | 0.0048413 | ||
| Y | 4 | 0.0000141 | ||
| V | 1264 | - | 5 | 0.0000176 |
| A | 12 | 0.0000422 | ||
| E | 1 | 0.0000035 | ||
| F | 2 | 0.0000070 | ||
| L | 863 | 0.0030342 | ||
| M | 16 | 0.0000563 | ||
| X | 1029 | 0.0036178 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 324 | 3458 | Europe 110812 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,K1045X,D614G | Netherlands_Utrecht | 3 | 489 | 3458 | Europe 110812 | |
| L | 5 | - | T19R,G142D,W152L,E156G,F157-,R158-,F186L,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Utrecht | 1 | 489 | 3458 | Europe 110812 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 324 | 3458 | Europe 110812 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 1 | 882 | 3458 | Europe 110812 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Friesland | 1 | 274 | 3458 | Europe 110812 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,G184V,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Friesland | 1 | 274 | 3458 | Europe 110812 | |
| L | 5 | - | T19I,L24X,P25X,P26X,A27X,V83X,G142D,Y144X,H146Q,E180V,Q183E,V213E,G252V,G257X,G339H,R346X,A348X,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,T547I,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | India_Tamil-Nadu_Trichy | 1 | 3 | 758 | 9840 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Connecticut | 1 | 742 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679X,P681X,A701X,N703X,S704X,N764X,D796X,L858X,T883X,Q954X,N969X,D614G | USA_California_Los-Angeles | 1 | 690 | 18974 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | New-Zealand_Waitemata | 1 | 116 | 1512 | Oceania 12522 | |
| L | 5 | F | L5F,T19X,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | New-Zealand_Waitemata | 6 | 116 | 1512 | Oceania 12522 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | New-Zealand_Auckland | 1 | 275 | 1512 | Oceania 12522 | |
| L | 5 | F | L5F,T19X,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | New-Zealand_Auckland | 4 | 275 | 1512 | Oceania 12522 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,F157L,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovenia_Podravska | 1 | 423 | 1201 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,F157L,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovenia_Savinjska | 15 | 132 | 1201 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,F157L,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovenia_Savinjska | 1 | 132 | 1201 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Indonesia_Jakarta_South-Jakarta | 1 | 49 | 1601 | 2336 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovakia_Ilava | 1 | 9 | 553 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | France_Grand-Est_Pannes | 1 | 280 | 1781 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_British-Columbia | 8 | 4254 | 23505 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Pays-de-la-Loire_Nantes | 1 | 50 | 495 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Ile-de-France_Ivry-Sur-Seine | 2 | 62 | 1803 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69Y,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-Jersey | 1 | 2516 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Auvergne-Rhone-Alpes_Isere | 1 | 323 | 2383 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Grand-Est_Romilly-Sur-Seine | 2 | 91 | 1781 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Ile-de-France_Lisses | 7 | 446 | 1803 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Grand-Est_Colmar | 6 | 397 | 1781 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Normandie_Caen | 1 | 79 | 662 | 13280 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,G446S,L452R,N460K,S477N,T478K,E484A,F486I,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_Queensland | 1 | 829 | 10986 | Oceania 12522 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,Y200C,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Hubei_Jingmen | 3 | 92 | 952 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | India_Maharashtra_Alibag | 2 | 91 | 2626 | 9840 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | India_Maharashtra_Alibag | 1 | 91 | 2626 | 9840 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Shanghai | 9 | 1854 | 10120 | Asia 57089 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,C1243F,D614G | China_Tianjin | 6 | 209 | 10120 | Asia 57089 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,E180G,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Guangdong_Guangzhou | 2 | 47 | 1278 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Henan_Luoyang | 1 | 36 | 416 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Gansu_Lanzhou | 9 | 108 | 229 | 10120 | Asia 57089 |
| L | 5 | F | L5F,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Gansu_Lanzhou | 1 | 108 | 229 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408X,I410X,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764X,D796Y,Q954H,N969K,D614G | India_Maharashtra_Pune | 1 | 663 | 2626 | 9840 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408I,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_British-Columbia | 1 | 4254 | 23505 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Shaanxi_Xian | 1 | 119 | 120 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145X,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K,D614G | Canada_British-Columbia | 1 | 4254 | 23505 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Washington | 21 | 2259 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | China_Shaanxi_Xian | 1 | 119 | 120 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Shanxi_Taiyuan | 2 | 53 | 162 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Austria_Vienna | 1 | 3045 | 8251 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Austria_Vienna | 2 | 3045 | 8251 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Jilin_Changchun | 1 | 94 | 94 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California_Los-Angeles | 3 | 690 | 18974 | 69991 | North-America 96155 |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253X,S256X,G257X,T323X,G339X,R346X,A348X,K356X,L368X,S371X,S373X,S375X,T376X,D405X,R408X,I410X,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477X,T478X,E484X,F486X,F490X,Q493X,S494X,Q498X,N501X,Y505X,P521X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Luxembourg | 1 | 2166 | Europe 110812 | ||
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,S256X,G257X,T323X,G339X,R346X,A348X,K356X,L368X,S371X,S373X,S375X,T376X,D405X,R408X,I410X,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477X,T478X,E484X,F486X,F490X,Q493X,S494X,Q498X,N501X,Y505X,P521X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Luxembourg | 4 | 2166 | Europe 110812 | ||
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,D253X,S256X,G257X,T323X,G339X,R346X,A348X,K356X,L368X,S371X,S373X,S375X,T376X,D405X,R408X,I410X,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477X,T478X,E484X,F486X,F490X,Q493X,S494X,Q498X,N501X,Y505X,P521X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Luxembourg | 6 | 2166 | Europe 110812 | ||
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252X,D253X,S256X,G257X,T323X,G339X,R346X,A348X,K356X,L368X,S371X,S373X,S375X,T376X,D405X,R408X,I410X,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477X,T478X,E484X,F486X,F490X,Q493X,S494X,Q498X,N501X,Y505X,P521X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Luxembourg | 10 | 2166 | Europe 110812 | ||
| L | 5 | F | L5F,T19I,L24X,P25X,P26X,A27X,V83A,G142D,Y144X,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,T547I,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | India_Gujarat_Kheda | 1 | 11 | 2844 | 9840 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24X,P25X,P26X,A27X,V83A,G142D,Y144X,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | India_Gujarat_Ahmedabad | 5 | 1454 | 2844 | 9840 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 80 | 18974 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,I410X,K417X,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505X,P521X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California_Santa-Clara | 1 | 1784 | 18974 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Hawaii_Honolulu | 79 | 1030 | 1630 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Hawaii_Kauai | 1 | 14 | 1630 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Florida | 23 | 3375 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,K356X,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Hawaii_Honolulu | 1 | 1030 | 1630 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Hawaii_Hawaii | 2 | 112 | 1630 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,T51X,Q52X,H69X,V70X,V83X,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Ukraine_Chernivtsi | 3 | 39 | 699 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,I410X,K417X,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505X,P521X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California_Santa-Clara | 1 | 1784 | 18974 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,C1243F,D614G | China_Fujian_Fuzhou | 4 | 259 | 530 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Michigan | 36 | 2551 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Ontario | 47 | 9439 | 23505 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Zhejiang_Hangzhou | 2 | 353 | 478 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Illinois | 15 | 2805 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Maryland | 1 | 1240 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Hawaii | 8 | 1630 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,G1124V,D614G | USA_California | 1 | 18974 | 69991 | North-America 96155 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52X,H69X,V70X,V83X,G142X,Y144X,Y145X,H146X,K147X,W152X,F157L,F186L,I210V,V213G,G257S,G339H,R346T,K356X,S371F,S373P,T376A,D405N,R408X,I410X,K417X,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K,D614G | Denmark_Hovedstaden | 1 | 620 | 3818 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52X,H69X,V70X,V83X,G142X,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Denmark_Nordjylland | 2 | 380 | 3818 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Fujian_Fuzhou | 1 | 259 | 530 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52X,H69X,V70X,V83X,G142X,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Denmark_Syddanmark | 1 | 985 | 3818 | Europe 110812 | |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339N,R346T,K356X,L368X,S371X,S373X,S375X,T376X,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Denmark_Sjaelland | 1 | 533 | 3818 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S,D614G | China_Gansu_Lanzhou | 1 | 108 | 229 | 10120 | Asia 57089 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Ireland_Clare | 2 | 20 | 2296 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Poland_Pomorze | 1 | 201 | 2320 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Ireland_Kildare | 2 | 111 | 2296 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Shanghai | 4 | 1854 | 10120 | Asia 57089 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408X,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Italy_Veneto | 1 | 888 | 4689 | Europe 110812 | |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368X,S371X,S373X,S375X,T376X,D405X,R408X,I410X,K417X,N440X,K444X,V445X,G446X,S477X,T478X,E484X,F486X,F490X,Q493X,S494X,Q498X,N501X,Y505X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas_Odessa | 1 | 91 | 5997 | 69991 | North-America 96155 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142X,Y144X,H146Q,F157X,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | United-Kingdom_England_PHEC | 1 | 9241 | 21173 | 27914 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Ireland_Dublin | 8 | 995 | 2296 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | United-Kingdom_England_PHEP | 11 | 4103 | 21173 | 27914 | Europe 110812 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405X,R408X,I410X,K417X,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Portugal | 1 | 1137 | Europe 110812 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Portugal | 19 | 1137 | Europe 110812 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,K417N,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Italy_Veneto | 1 | 888 | 4689 | Europe 110812 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Portugal | 1 | 1137 | Europe 110812 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Portugal | 5 | 1137 | Europe 110812 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,S256L,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Israel | 1 | 2007 | Asia 57089 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Portugal | 1 | 1137 | Europe 110812 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,L368X,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Tochigi | 1 | 172 | 9629 | Asia 57089 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257D,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Miyazaki | 1 | 133 | 9629 | Asia 57089 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Tochigi | 4 | 172 | 9629 | Asia 57089 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Israel | 1 | 2007 | Asia 57089 |
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