COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: Jul 31, 2021
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Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
total # of seqs: 1932900
| ori | pos | mut | global count | global frequency |
|---|---|---|---|---|
| L | 5 | # | 337 | 0.0001743 |
| - | 3 | 0.0000016 | ||
| C | 1 | 0.0000005 | ||
| F | 74708 | 0.0386507 | ||
| I | 4 | 0.0000021 | ||
| P | 3 | 0.0000016 | ||
| R | 1 | 0.0000005 | ||
| V | 3 | 0.0000016 | ||
| X | 1501 | 0.0007766 | ||
| S | 12 | - | 1 | 0.0000005 |
| A | 11 | 0.0000057 | ||
| C | 178 | 0.0000921 | ||
| F | 7251 | 0.0037514 | ||
| P | 97 | 0.0000502 | ||
| T | 1 | 0.0000005 | ||
| X | 380 | 0.0001966 | ||
| Y | 64 | 0.0000331 | ||
| S | 13 | # | 3 | 0.0000016 |
| - | 1 | 0.0000005 | ||
| C | 9 | 0.0000047 | ||
| G | 74 | 0.0000383 | ||
| I | 28969 | 0.0149873 | ||
| N | 87 | 0.0000450 | ||
| R | 3 | 0.0000016 | ||
| T | 155 | 0.0000802 | ||
| V | 1 | 0.0000005 | ||
| X | 488 | 0.0002525 | ||
| L | 18 | # | 1 | 0.0000005 |
| - | 33 | 0.0000171 | ||
| F | 123266 | 0.0637726 | ||
| I | 11 | 0.0000057 | ||
| P | 7 | 0.0000036 | ||
| R | 505 | 0.0002613 | ||
| V | 7 | 0.0000036 | ||
| X | 779 | 0.0004030 | ||
| T | 19 | # | 3 | 0.0000016 |
| - | 6 | 0.0000031 | ||
| A | 69 | 0.0000357 | ||
| G | 26 | 0.0000135 | ||
| I | 1716 | 0.0008878 | ||
| K | 199 | 0.0001030 | ||
| P | 6 | 0.0000031 | ||
| R | 168177 | 0.0870076 | ||
| S | 13 | 0.0000067 | ||
| X | 338 | 0.0001749 | ||
| T | 20 | # | 1 | 0.0000005 |
| - | 6 | 0.0000031 | ||
| A | 26 | 0.0000135 | ||
| F | 3 | 0.0000016 | ||
| I | 6485 | 0.0033551 | ||
| K | 9 | 0.0000047 | ||
| N | 47819 | 0.0247395 | ||
| P | 115 | 0.0000595 | ||
| S | 64 | 0.0000331 | ||
| X | 238 | 0.0001231 | ||
| P | 26 | # | 3 | 0.0000016 |
| - | 4 | 0.0000021 | ||
| A | 1 | 0.0000005 | ||
| F | 36 | 0.0000186 | ||
| H | 305 | 0.0001578 | ||
| L | 1495 | 0.0007734 | ||
| R | 51 | 0.0000264 | ||
| S | 53171 | 0.0275084 | ||
| T | 14 | 0.0000072 | ||
| X | 252 | 0.0001304 | ||
| Y | 5 | 0.0000026 | ||
| Q | 52 | # | 1 | 0.0000005 |
| - | 1 | 0.0000005 | ||
| E | 23 | 0.0000119 | ||
| H | 269 | 0.0001392 | ||
| K | 90 | 0.0000466 | ||
| L | 86 | 0.0000445 | ||
| P | 2 | 0.0000010 | ||
| R | 5467 | 0.0028284 | ||
| X | 1298 | 0.0006715 | ||
| A | 67 | # | 1 | 0.0000005 |
| - | 150 | 0.0000776 | ||
| D | 110 | 0.0000569 | ||
| F | 1 | 0.0000005 | ||
| G | 15 | 0.0000078 | ||
| N | 1 | 0.0000005 | ||
| P | 6 | 0.0000031 | ||
| S | 1547 | 0.0008004 | ||
| T | 71 | 0.0000367 | ||
| V | 8903 | 0.0046060 | ||
| X | 249 | 0.0001288 | ||
| H | 69 | - | 894279 | 0.4626618 |
| A | 4 | 0.0000021 | ||
| D | 15 | 0.0000078 | ||
| I | 2 | 0.0000010 | ||
| L | 27 | 0.0000140 | ||
| M | 1 | 0.0000005 | ||
| N | 7 | 0.0000036 | ||
| P | 21 | 0.0000109 | ||
| Q | 119 | 0.0000616 | ||
| R | 26 | 0.0000135 | ||
| S | 348 | 0.0001800 | ||
| T | 2 | 0.0000010 | ||
| X | 16448 | 0.0085095 | ||
| Y | 987 | 0.0005106 | ||
| V | 70 | # | 2859 | 0.0014791 |
| - | 889298 | 0.4600848 | ||
| A | 86 | 0.0000445 | ||
| C | 2 | 0.0000010 | ||
| F | 2569 | 0.0013291 | ||
| G | 33 | 0.0000171 | ||
| I | 1828 | 0.0009457 | ||
| L | 63 | 0.0000326 | ||
| S | 53 | 0.0000274 | ||
| X | 12559 | 0.0064975 | ||
| G | 75 | # | 3 | 0.0000016 |
| - | 49 | 0.0000254 | ||
| A | 99 | 0.0000512 | ||
| C | 46 | 0.0000238 | ||
| D | 81 | 0.0000419 | ||
| L | 1 | 0.0000005 | ||
| R | 2132 | 0.0011030 | ||
| S | 149 | 0.0000771 | ||
| V | 4529 | 0.0023431 | ||
| X | 336 | 0.0001738 | ||
| D | 80 | # | 1 | 0.0000005 |
| A | 10327 | 0.0053427 | ||
| C | 10 | 0.0000052 | ||
| E | 15 | 0.0000078 | ||
| F | 25 | 0.0000129 | ||
| G | 9154 | 0.0047359 | ||
| H | 46 | 0.0000238 | ||
| N | 242 | 0.0001252 | ||
| S | 3 | 0.0000016 | ||
| V | 8 | 0.0000041 | ||
| X | 228 | 0.0001180 | ||
| Y | 4656 | 0.0024088 | ||
| T | 95 | # | 4 | 0.0000021 |
| - | 6 | 0.0000031 | ||
| A | 94 | 0.0000486 | ||
| I | 141221 | 0.0730617 | ||
| M | 4 | 0.0000021 | ||
| N | 178 | 0.0000921 | ||
| P | 1 | 0.0000005 | ||
| S | 65 | 0.0000336 | ||
| V | 3 | 0.0000016 | ||
| X | 663 | 0.0003430 | ||
| S | 98 | # | 2 | 0.0000010 |
| A | 4 | 0.0000021 | ||
| C | 1 | 0.0000005 | ||
| F | 30716 | 0.0158911 | ||
| L | 3 | 0.0000016 | ||
| N | 1 | 0.0000005 | ||
| P | 89 | 0.0000460 | ||
| T | 5 | 0.0000026 | ||
| X | 510 | 0.0002639 | ||
| Y | 12 | 0.0000062 | ||
| D | 138 | # | 2 | 0.0000010 |
| - | 220 | 0.0001138 | ||
| A | 33 | 0.0000171 | ||
| E | 1 | 0.0000005 | ||
| G | 133 | 0.0000688 | ||
| H | 10907 | 0.0056428 | ||
| N | 314 | 0.0001625 | ||
| V | 14 | 0.0000072 | ||
| X | 841 | 0.0004351 | ||
| Y | 53560 | 0.0277097 | ||
| G | 142 | - | 2199 | 0.0011377 |
| A | 40 | 0.0000207 | ||
| C | 62 | 0.0000321 | ||
| D | 134661 | 0.0696679 | ||
| F | 1 | 0.0000005 | ||
| N | 6 | 0.0000031 | ||
| P | 3 | 0.0000016 | ||
| R | 2 | 0.0000010 | ||
| S | 918 | 0.0004749 | ||
| V | 2560 | 0.0013244 | ||
| X | 17859 | 0.0092395 | ||
| Y | 4 | 0.0000021 | ||
| V | 143 | # | 104 | 0.0000538 |
| $ | 1 | 0.0000005 | ||
| - | 3181 | 0.0016457 | ||
| A | 28 | 0.0000145 | ||
| D | 784 | 0.0004056 | ||
| E | 6 | 0.0000031 | ||
| F | 1803 | 0.0009328 | ||
| G | 2 | 0.0000010 | ||
| I | 50 | 0.0000259 | ||
| K | 2 | 0.0000010 | ||
| L | 24 | 0.0000124 | ||
| N | 3 | 0.0000016 | ||
| R | 1 | 0.0000005 | ||
| S | 1 | 0.0000005 | ||
| T | 3 | 0.0000016 | ||
| W | 1 | 0.0000005 | ||
| X | 2737 | 0.0014160 | ||
| Y | 144 | # | 5 | 0.0000026 |
| $ | 10 | 0.0000052 | ||
| - | 878559 | 0.4545289 | ||
| C | 14 | 0.0000072 | ||
| D | 4 | 0.0000021 | ||
| E | 1 | 0.0000005 | ||
| F | 1218 | 0.0006301 | ||
| G | 3 | 0.0000016 | ||
| H | 37 | 0.0000191 | ||
| I | 14 | 0.0000072 | ||
| K | 3 | 0.0000016 | ||
| L | 3 | 0.0000016 | ||
| N | 23 | 0.0000119 | ||
| P | 5 | 0.0000026 | ||
| S | 1114 | 0.0005763 | ||
| T | 31 | 0.0000160 | ||
| V | 315 | 0.0001630 | ||
| W | 2 | 0.0000010 | ||
| X | 21936 | 0.0113488 | ||
| W | 152 | # | 2 | 0.0000010 |
| $ | 1 | 0.0000005 | ||
| - | 23 | 0.0000119 | ||
| C | 28230 | 0.0146050 | ||
| F | 4 | 0.0000021 | ||
| G | 91 | 0.0000471 | ||
| K | 1 | 0.0000005 | ||
| L | 9379 | 0.0048523 | ||
| Q | 2 | 0.0000010 | ||
| R | 16814 | 0.0086988 | ||
| S | 24 | 0.0000124 | ||
| X | 763 | 0.0003947 | ||
| Y | 1 | 0.0000005 | ||
| M | 153 | # | 9 | 0.0000047 |
| - | 20 | 0.0000103 | ||
| I | 2151 | 0.0011128 | ||
| K | 48 | 0.0000248 | ||
| L | 14 | 0.0000072 | ||
| R | 3 | 0.0000016 | ||
| T | 8081 | 0.0041808 | ||
| V | 202 | 0.0001045 | ||
| W | 2 | 0.0000010 | ||
| X | 335 | 0.0001733 | ||
| E | 156 | # | 8 | 0.0000041 |
| - | 160640 | 0.0831083 | ||
| A | 79 | 0.0000409 | ||
| D | 193 | 0.0000998 | ||
| G | 55 | 0.0000285 | ||
| K | 14 | 0.0000072 | ||
| Q | 133 | 0.0000688 | ||
| V | 189 | 0.0000978 | ||
| X | 5489 | 0.0028398 | ||
| F | 157 | # | 1 | 0.0000005 |
| - | 160670 | 0.0831238 | ||
| C | 252 | 0.0001304 | ||
| E | 1 | 0.0000005 | ||
| L | 2406 | 0.0012448 | ||
| R | 1 | 0.0000005 | ||
| S | 9398 | 0.0048621 | ||
| V | 2 | 0.0000010 | ||
| X | 6142 | 0.0031776 | ||
| Y | 11 | 0.0000057 | ||
| R | 158 | # | 19 | 0.0000098 |
| $ | 2 | 0.0000010 | ||
| - | 314 | 0.0001625 | ||
| G | 160759 | 0.0831698 | ||
| I | 23 | 0.0000119 | ||
| K | 35 | 0.0000181 | ||
| L | 2 | 0.0000010 | ||
| S | 568 | 0.0002939 | ||
| X | 6070 | 0.0031404 | ||
| L | 189 | - | 26 | 0.0000135 |
| F | 6141 | 0.0031771 | ||
| H | 1 | 0.0000005 | ||
| I | 10 | 0.0000052 | ||
| P | 4 | 0.0000021 | ||
| V | 1 | 0.0000005 | ||
| X | 457 | 0.0002364 | ||
| R | 190 | - | 8 | 0.0000041 |
| G | 31 | 0.0000160 | ||
| I | 8 | 0.0000041 | ||
| K | 216 | 0.0001117 | ||
| M | 268 | 0.0001387 | ||
| S | 47552 | 0.0246014 | ||
| W | 30 | 0.0000155 | ||
| X | 228 | 0.0001180 | ||
| D | 215 | - | 7 | 0.0000036 |
| A | 109 | 0.0000564 | ||
| C | 2 | 0.0000010 | ||
| E | 108 | 0.0000559 | ||
| G | 10215 | 0.0052848 | ||
| H | 1859 | 0.0009618 | ||
| I | 2 | 0.0000010 | ||
| L | 5 | 0.0000026 | ||
| N | 64 | 0.0000331 | ||
| Q | 1 | 0.0000005 | ||
| V | 91 | 0.0000471 | ||
| X | 261 | 0.0001350 | ||
| Y | 2367 | 0.0012246 | ||
| A | 222 | # | 3 | 0.0000016 |
| - | 2 | 0.0000010 | ||
| C | 1 | 0.0000005 | ||
| D | 1 | 0.0000005 | ||
| F | 14 | 0.0000072 | ||
| G | 1 | 0.0000005 | ||
| I | 3 | 0.0000016 | ||
| P | 35 | 0.0000181 | ||
| R | 1 | 0.0000005 | ||
| S | 503 | 0.0002602 | ||
| T | 41 | 0.0000212 | ||
| V | 169743 | 0.0878178 | ||
| W | 1 | 0.0000005 | ||
| X | 1032 | 0.0005339 | ||
| L | 242 | - | 10454 | 0.0054085 |
| F | 165 | 0.0000854 | ||
| H | 28 | 0.0000145 | ||
| I | 65 | 0.0000336 | ||
| P | 128 | 0.0000662 | ||
| Q | 8 | 0.0000041 | ||
| R | 1 | 0.0000005 | ||
| S | 4 | 0.0000021 | ||
| V | 2 | 0.0000010 | ||
| X | 605 | 0.0003130 | ||
| Y | 1 | 0.0000005 | ||
| A | 243 | # | 12 | 0.0000062 |
| - | 10795 | 0.0055849 | ||
| D | 11 | 0.0000057 | ||
| G | 14 | 0.0000072 | ||
| L | 1 | 0.0000005 | ||
| P | 5 | 0.0000026 | ||
| R | 7 | 0.0000036 | ||
| S | 998 | 0.0005163 | ||
| T | 45 | 0.0000233 | ||
| V | 287 | 0.0001485 | ||
| X | 774 | 0.0004004 | ||
| Y | 7 | 0.0000036 | ||
| L | 244 | # | 3 | 0.0000016 |
| - | 10751 | 0.0055621 | ||
| F | 52 | 0.0000269 | ||
| S | 193 | 0.0000998 | ||
| V | 7 | 0.0000036 | ||
| X | 120 | 0.0000621 | ||
| D | 253 | - | 2397 | 0.0012401 |
| A | 236 | 0.0001221 | ||
| E | 4 | 0.0000021 | ||
| G | 33134 | 0.0171421 | ||
| H | 9 | 0.0000047 | ||
| N | 118 | 0.0000610 | ||
| S | 10 | 0.0000052 | ||
| V | 39 | 0.0000202 | ||
| X | 170 | 0.0000880 | ||
| Y | 397 | 0.0002054 | ||
| A | 262 | # | 3 | 0.0000016 |
| - | 11 | 0.0000057 | ||
| D | 22 | 0.0000114 | ||
| F | 1 | 0.0000005 | ||
| G | 16 | 0.0000083 | ||
| P | 11 | 0.0000057 | ||
| S | 12897 | 0.0066724 | ||
| T | 89 | 0.0000460 | ||
| V | 193 | 0.0000998 | ||
| W | 1 | 0.0000005 | ||
| X | 1680 | 0.0008692 | ||
| Y | 2 | 0.0000010 | ||
| P | 272 | F | 31 | 0.0000160 |
| H | 66 | 0.0000341 | ||
| L | 9223 | 0.0047716 | ||
| Q | 2 | 0.0000010 | ||
| R | 2 | 0.0000010 | ||
| S | 167 | 0.0000864 | ||
| T | 25 | 0.0000129 | ||
| X | 263 | 0.0001361 | ||
| K | 417 | # | 2 | 0.0000010 |
| - | 1 | 0.0000005 | ||
| A | 1 | 0.0000005 | ||
| E | 4 | 0.0000021 | ||
| M | 8 | 0.0000041 | ||
| N | 10711 | 0.0055414 | ||
| R | 106 | 0.0000548 | ||
| T | 45841 | 0.0237162 | ||
| X | 781 | 0.0004041 | ||
| N | 439 | - | 1 | 0.0000005 |
| F | 1 | 0.0000005 | ||
| I | 6 | 0.0000031 | ||
| K | 23922 | 0.0123762 | ||
| S | 2 | 0.0000010 | ||
| T | 1 | 0.0000005 | ||
| X | 457 | 0.0002364 | ||
| Y | 1 | 0.0000005 | ||
| L | 452 | # | 12 | 0.0000062 |
| - | 2 | 0.0000010 | ||
| F | 1 | 0.0000005 | ||
| M | 984 | 0.0005091 | ||
| P | 1 | 0.0000005 | ||
| Q | 2997 | 0.0015505 | ||
| R | 215762 | 0.1116261 | ||
| V | 4 | 0.0000021 | ||
| W | 2 | 0.0000010 | ||
| X | 623 | 0.0003223 | ||
| S | 477 | # | 3 | 0.0000016 |
| - | 1 | 0.0000005 | ||
| G | 205 | 0.0001061 | ||
| H | 1 | 0.0000005 | ||
| I | 713 | 0.0003689 | ||
| K | 3 | 0.0000016 | ||
| N | 55409 | 0.0286663 | ||
| R | 1198 | 0.0006198 | ||
| T | 23 | 0.0000119 | ||
| X | 445 | 0.0002302 | ||
| T | 478 | # | 10 | 0.0000052 |
| - | 1 | 0.0000005 | ||
| A | 9 | 0.0000047 | ||
| I | 680 | 0.0003518 | ||
| K | 186841 | 0.0966636 | ||
| N | 2 | 0.0000010 | ||
| R | 307 | 0.0001588 | ||
| S | 2 | 0.0000010 | ||
| X | 428 | 0.0002214 | ||
| E | 484 | # | 5 | 0.0000026 |
| - | 2 | 0.0000010 | ||
| A | 59 | 0.0000305 | ||
| D | 46 | 0.0000238 | ||
| G | 68 | 0.0000352 | ||
| K | 107719 | 0.0557292 | ||
| Q | 4839 | 0.0025035 | ||
| R | 12 | 0.0000062 | ||
| V | 4 | 0.0000021 | ||
| X | 473 | 0.0002447 | ||
| F | 490 | $ | 1 | 0.0000005 |
| I | 19 | 0.0000098 | ||
| L | 610 | 0.0003156 | ||
| S | 6163 | 0.0031885 | ||
| V | 79 | 0.0000409 | ||
| X | 181 | 0.0000936 | ||
| Y | 76 | 0.0000393 | ||
| S | 494 | $ | 1 | 0.0000005 |
| A | 22 | 0.0000114 | ||
| L | 94 | 0.0000486 | ||
| P | 8581 | 0.0044394 | ||
| R | 5 | 0.0000026 | ||
| T | 7 | 0.0000036 | ||
| X | 159 | 0.0000823 | ||
| N | 501 | # | 7 | 0.0000036 |
| - | 2 | 0.0000010 | ||
| D | 1 | 0.0000005 | ||
| E | 1 | 0.0000005 | ||
| F | 1 | 0.0000005 | ||
| H | 24 | 0.0000124 | ||
| I | 23 | 0.0000119 | ||
| K | 5 | 0.0000026 | ||
| R | 1 | 0.0000005 | ||
| S | 34 | 0.0000176 | ||
| T | 3166 | 0.0016380 | ||
| W | 1 | 0.0000005 | ||
| X | 1374 | 0.0007108 | ||
| Y | 946337 | 0.4895944 | ||
| A | 570 | D | 881415 | 0.4560065 |
| E | 1 | 0.0000005 | ||
| G | 15 | 0.0000078 | ||
| H | 1 | 0.0000005 | ||
| N | 1 | 0.0000005 | ||
| S | 270 | 0.0001397 | ||
| T | 8 | 0.0000041 | ||
| V | 422 | 0.0002183 | ||
| X | 954 | 0.0004936 | ||
| Y | 80 | 0.0000414 | ||
| T | 572 | # | 4 | 0.0000021 |
| A | 26 | 0.0000135 | ||
| I | 6615 | 0.0034223 | ||
| N | 34 | 0.0000176 | ||
| S | 45 | 0.0000233 | ||
| X | 87 | 0.0000450 | ||
| E | 583 | $ | 1 | 0.0000005 |
| - | 1 | 0.0000005 | ||
| A | 78 | 0.0000404 | ||
| D | 6720 | 0.0034766 | ||
| G | 4 | 0.0000021 | ||
| I | 1 | 0.0000005 | ||
| K | 20 | 0.0000103 | ||
| Q | 362 | 0.0001873 | ||
| V | 1 | 0.0000005 | ||
| X | 124 | 0.0000642 | ||
| H | 655 | # | 1 | 0.0000005 |
| - | 1 | 0.0000005 | ||
| D | 1 | 0.0000005 | ||
| E | 1 | 0.0000005 | ||
| L | 18 | 0.0000093 | ||
| N | 3 | 0.0000016 | ||
| P | 2 | 0.0000010 | ||
| Q | 18 | 0.0000093 | ||
| R | 31 | 0.0000160 | ||
| X | 283 | 0.0001464 | ||
| Y | 52121 | 0.0269652 | ||
| Q | 675 | $ | 1 | 0.0000005 |
| - | 60 | 0.0000310 | ||
| E | 1 | 0.0000005 | ||
| H | 17329 | 0.0089653 | ||
| K | 120 | 0.0000621 | ||
| L | 52 | 0.0000269 | ||
| P | 10 | 0.0000052 | ||
| R | 1911 | 0.0009887 | ||
| S | 1 | 0.0000005 | ||
| W | 2 | 0.0000010 | ||
| X | 196 | 0.0001014 | ||
| Y | 1 | 0.0000005 | ||
| Q | 677 | - | 62 | 0.0000321 |
| E | 3 | 0.0000016 | ||
| H | 27330 | 0.0141394 | ||
| K | 67 | 0.0000347 | ||
| L | 148 | 0.0000766 | ||
| P | 3823 | 0.0019779 | ||
| R | 404 | 0.0002090 | ||
| S | 1 | 0.0000005 | ||
| X | 395 | 0.0002044 | ||
| Y | 14 | 0.0000072 | ||
| P | 681 | # | 13 | 0.0000067 |
| - | 19 | 0.0000098 | ||
| A | 1 | 0.0000005 | ||
| C | 1 | 0.0000005 | ||
| H | 921958 | 0.4769817 | ||
| L | 518 | 0.0002680 | ||
| Q | 1 | 0.0000005 | ||
| R | 177485 | 0.0918232 | ||
| S | 67 | 0.0000347 | ||
| T | 4 | 0.0000021 | ||
| X | 1515 | 0.0007838 | ||
| Y | 95 | 0.0000491 | ||
| A | 688 | - | 8 | 0.0000041 |
| D | 8 | 0.0000041 | ||
| F | 2 | 0.0000010 | ||
| G | 3 | 0.0000016 | ||
| L | 1 | 0.0000005 | ||
| P | 6 | 0.0000031 | ||
| S | 454 | 0.0002349 | ||
| T | 387 | 0.0002002 | ||
| V | 7328 | 0.0037912 | ||
| X | 154 | 0.0000797 | ||
| A | 701 | # | 1 | 0.0000005 |
| E | 5 | 0.0000026 | ||
| G | 14 | 0.0000072 | ||
| I | 1 | 0.0000005 | ||
| L | 1 | 0.0000005 | ||
| P | 1 | 0.0000005 | ||
| S | 699 | 0.0003616 | ||
| T | 111 | 0.0000574 | ||
| V | 36809 | 0.0190434 | ||
| X | 268 | 0.0001387 | ||
| T | 716 | # | 3 | 0.0000016 |
| - | 1 | 0.0000005 | ||
| A | 2 | 0.0000010 | ||
| I | 885681 | 0.4582136 | ||
| K | 1 | 0.0000005 | ||
| L | 11 | 0.0000057 | ||
| M | 6 | 0.0000031 | ||
| P | 1 | 0.0000005 | ||
| Q | 1 | 0.0000005 | ||
| V | 304 | 0.0001573 | ||
| X | 1278 | 0.0006612 | ||
| T | 732 | A | 21781 | 0.0112686 |
| I | 1123 | 0.0005810 | ||
| S | 834 | 0.0004315 | ||
| V | 2 | 0.0000010 | ||
| X | 158 | 0.0000817 | ||
| G | 769 | $ | 1 | 0.0000005 |
| A | 87 | 0.0000450 | ||
| C | 1 | 0.0000005 | ||
| E | 11 | 0.0000057 | ||
| R | 231 | 0.0001195 | ||
| V | 11456 | 0.0059268 | ||
| X | 124 | 0.0000642 | ||
| V | 772 | # | 1 | 0.0000005 |
| A | 38 | 0.0000197 | ||
| D | 4 | 0.0000021 | ||
| F | 29 | 0.0000150 | ||
| G | 47 | 0.0000243 | ||
| I | 6019 | 0.0031140 | ||
| L | 1 | 0.0000005 | ||
| M | 1 | 0.0000005 | ||
| X | 93 | 0.0000481 | ||
| D | 796 | # | 1 | 0.0000005 |
| - | 2 | 0.0000010 | ||
| A | 3 | 0.0000016 | ||
| E | 12 | 0.0000062 | ||
| G | 94 | 0.0000486 | ||
| H | 4102 | 0.0021222 | ||
| I | 1 | 0.0000005 | ||
| N | 94 | 0.0000486 | ||
| V | 3 | 0.0000016 | ||
| X | 143 | 0.0000740 | ||
| Y | 1798 | 0.0009302 | ||
| A | 845 | # | 1 | 0.0000005 |
| D | 71 | 0.0000367 | ||
| G | 3 | 0.0000016 | ||
| P | 1 | 0.0000005 | ||
| S | 5969 | 0.0030881 | ||
| T | 36 | 0.0000186 | ||
| V | 568 | 0.0002939 | ||
| X | 293 | 0.0001516 | ||
| T | 859 | - | 6 | 0.0000031 |
| A | 28 | 0.0000145 | ||
| I | 2061 | 0.0010663 | ||
| N | 12015 | 0.0062160 | ||
| S | 2 | 0.0000010 | ||
| X | 188 | 0.0000973 | ||
| F | 888 | # | 2 | 0.0000010 |
| I | 1 | 0.0000005 | ||
| L | 5906 | 0.0030555 | ||
| S | 1 | 0.0000005 | ||
| X | 61 | 0.0000316 | ||
| D | 936 | - | 1 | 0.0000005 |
| A | 6 | 0.0000031 | ||
| E | 60 | 0.0000310 | ||
| G | 68 | 0.0000352 | ||
| H | 715 | 0.0003699 | ||
| L | 1 | 0.0000005 | ||
| N | 2992 | 0.0015479 | ||
| T | 2 | 0.0000010 | ||
| V | 90 | 0.0000466 | ||
| X | 114 | 0.0000590 | ||
| Y | 3981 | 0.0020596 | ||
| S | 939 | - | 3 | 0.0000016 |
| A | 8 | 0.0000041 | ||
| C | 1 | 0.0000005 | ||
| F | 7356 | 0.0038057 | ||
| T | 3 | 0.0000016 | ||
| X | 151 | 0.0000781 | ||
| Y | 35 | 0.0000181 | ||
| D | 950 | # | 90 | 0.0000466 |
| - | 1 | 0.0000005 | ||
| A | 22 | 0.0000114 | ||
| E | 9 | 0.0000047 | ||
| G | 31 | 0.0000160 | ||
| H | 8865 | 0.0045864 | ||
| N | 161518 | 0.0835625 | ||
| S | 2 | 0.0000010 | ||
| X | 6457 | 0.0033406 | ||
| Y | 173 | 0.0000895 | ||
| Q | 957 | E | 13 | 0.0000067 |
| H | 24 | 0.0000124 | ||
| K | 2 | 0.0000010 | ||
| L | 1046 | 0.0005412 | ||
| R | 9799 | 0.0050696 | ||
| X | 1496 | 0.0007740 | ||
| S | 982 | A | 881264 | 0.4559284 |
| L | 46 | 0.0000238 | ||
| P | 1 | 0.0000005 | ||
| T | 2 | 0.0000010 | ||
| V | 1 | 0.0000005 | ||
| X | 1208 | 0.0006250 | ||
| T | 1027 | - | 1 | 0.0000005 |
| A | 15 | 0.0000078 | ||
| I | 52240 | 0.0270267 | ||
| N | 13 | 0.0000067 | ||
| S | 33 | 0.0000171 | ||
| V | 2 | 0.0000010 | ||
| X | 153 | 0.0000792 | ||
| D | 1118 | # | 1 | 0.0000005 |
| A | 13 | 0.0000067 | ||
| E | 1 | 0.0000005 | ||
| G | 12 | 0.0000062 | ||
| H | 881238 | 0.4559149 | ||
| N | 2 | 0.0000010 | ||
| Q | 4 | 0.0000021 | ||
| R | 4 | 0.0000021 | ||
| V | 20 | 0.0000103 | ||
| X | 1396 | 0.0007222 | ||
| Y | 1835 | 0.0009494 | ||
| V | 1176 | - | 1 | 0.0000005 |
| A | 1 | 0.0000005 | ||
| D | 1 | 0.0000005 | ||
| F | 56966 | 0.0294718 | ||
| G | 3 | 0.0000016 | ||
| I | 3 | 0.0000016 | ||
| L | 2 | 0.0000010 | ||
| X | 159 | 0.0000823 | ||
| K | 1191 | D | 1 | 0.0000005 |
| E | 6 | 0.0000031 | ||
| M | 2 | 0.0000010 | ||
| N | 28542 | 0.0147664 | ||
| Q | 12 | 0.0000062 | ||
| R | 12 | 0.0000062 | ||
| T | 6 | 0.0000031 | ||
| X | 207 | 0.0001071 | ||
| G | 1219 | A | 24 | 0.0000124 |
| C | 3169 | 0.0016395 | ||
| D | 4 | 0.0000021 | ||
| F | 4 | 0.0000021 | ||
| L | 1 | 0.0000005 | ||
| R | 1 | 0.0000005 | ||
| S | 79 | 0.0000409 | ||
| V | 4406 | 0.0022795 | ||
| X | 151 | 0.0000781 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | codon | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|---|---|
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Belgium_Luxembourg | 1 | 478 | 29444 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | E484K,V1176F,D614G | Brazil_Minas-Gerais_Desterro-do-Melo | 1 | 2 | 385 | 21458 | South-America 33826 |
| L | 5 | # | CTT | -TT | E484K,V1176F,D614G | Brazil_Rio-Grande-do-Sul_Candelaria | 1 | 2 | 1307 | 21458 | South-America 33826 |
| L | 5 | # | CTT | -TT | H69-,V70-,D614G | Denmark | 1 | 118816 | Europe 1178650 | ||
| L | 5 | # | CTT | -TT | H69-,V70-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark | 1 | 118816 | Europe 1178650 | ||
| L | 5 | # | CTT | -TT | A222V,A262S,D614G | Denmark_Hovedstaden | 1 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A222V,D614G | Denmark_Hovedstaden | 2 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,N439K,D614G | Denmark_Hovedstaden | 1 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,V143X,Y144X,W152R,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Hovedstaden | 1 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,E484K,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Hovedstaden | 1 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Hovedstaden | 4 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Hovedstaden | 16 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,W152R,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Hovedstaden | 13 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | L18F,A222V,D614G | Denmark_Hovedstaden | 1 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | S477N,D614G | Denmark_Hovedstaden | 3 | 53885 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A222V,D614G | Denmark_Midtjylland | 7 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,V143X,Y144X,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Midtjylland | 1 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Midtjylland | 13 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Midtjylland | 11 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | L18F,A222V,D614G | Denmark_Midtjylland | 1 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | L18F,Y144-,A222V,D614G | Denmark_Midtjylland | 1 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | S477R,D614G | Denmark_Midtjylland | 1 | 20909 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A222V,D614G | Denmark_Nordjylland | 24 | 10217 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A67S,H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Nordjylland | 2 | 10217 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,D614G | Denmark_Nordjylland | 1 | 10217 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Nordjylland | 120 | 10217 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | L18F,A222V,D614G | Denmark_Nordjylland | 7 | 10217 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A222V,D614G | Denmark_Sjaelland | 2 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Sjaelland | 1 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | D614G | Denmark_Sjaelland | 3 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,E484K,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Sjaelland | 1 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Sjaelland | 6 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Sjaelland | 1 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,W152R,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Sjaelland | 2 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | L452M,D614G | Denmark_Sjaelland | 1 | 14004 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A222V,D614G | Denmark_Syddanmark | 2 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | D614G | Denmark_Syddanmark | 3 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,V143X,Y144X,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Syddanmark | 1 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,E484K,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Syddanmark | 2 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Syddanmark | 6 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Denmark_Syddanmark | 5 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | Q677H,D614G | Denmark_Syddanmark | 1 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | T95I,D253G,S477N,Q957R,D614G | Denmark_Syddanmark | 4 | 17858 | 118816 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70#,Y144-,N501Y,A570D,E583D,P681H,T716I,S982A,D1118H,D614G | Ecuador_Carchi_Tulcan | 1 | 12 | 13 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | G75V,T95I,D253G,E484K,A701V,D614G | Ecuador_Carchi_Tulcan | 1 | 12 | 13 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95X,D253X,E484K,A701X,D614G | Ecuador_Esmeraldas_Esmeraldas | 1 | 13 | 27 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701X,D614G | Ecuador_Loja_Loja | 1 | 18 | 25 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | Ecuador_Los-Rios_Urdaneta | 1 | 1 | 65 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | Ecuador_Manabi_Portoviejo | 3 | 15 | 86 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701X,D614G | Ecuador_Manabi_Portoviejo | 1 | 15 | 86 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | Ecuador_Pichincha_Quito | 1 | 56 | 73 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | Ecuador_Portoviejo_Andres-de-Vera | 1 | 1 | 6 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | Ecuador_Portoviejo_Manabi | 1 | 2 | 6 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | T95X,D253X,E484K,A701X,D614G | Ecuador_Santo-Domingo_Santo-Domingo | 1 | 11 | 11 | 956 | South-America 33826 |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Gabon_Lambarene | 5 | 72 | 85 | Africa 13011 | |
| L | 5 | # | CTT | -TT | S13I,H69-,V70-,Y144-,E484K,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Gabon_Lambarene | 1 | 72 | 85 | Africa 13011 | |
| L | 5 | # | CTT | -TT | T95I,Y144-,E484K,P681H,D796H,D614G | Gabon_Lambarene | 1 | 72 | 85 | Africa 13011 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Germany_Baden-Wurttemberg_Tuebingen | 1 | 102 | 12077 | 109037 | Europe 1178650 |
| L | 5 | # | CTT | -TT | A67T,D614G | Hong-Kong | 1 | 4036 | Asia 127304 | ||
| L | 5 | # | CTT | -TT | S12F,D614G | Hong-Kong | 1 | 4036 | Asia 127304 | ||
| L | 5 | # | CTT | -TT | D614G | India_Gujarat | 1 | 2322 | 21041 | Asia 127304 | |
| L | 5 | # | CTT | -TT | T95I,D138Y,E484K,N501Y,P681H,D950N,D614G | Mexico_Puebla | 1 | 688 | 13571 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,Y144S,E484K,N501Y,P681H,D950N,D614G | Mexico_Puebla | 1 | 688 | 13571 | North-America 566289 | |
| L | 5 | # | CTT | -TT | Q677H,D614G | North-Macedonia | 3 | 561 | Europe 1178650 | ||
| L | 5 | # | CTT | -TT | T19R,G142D,E156-,F157-,R158G,L452R,T478K,N501#,P681R,D614G | Pakistan_Islamabad | 1 | 63 | 295 | Asia 127304 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,A845S,S982A,D1118H,D614G | Poland_Dolnoslakie_Bobolice | 1 | 1 | 843 | 15616 | Europe 1178650 |
| L | 5 | # | CTT | -TT | S98F,D614G | Poland_Zachodniopomorskie | 1 | 769 | 15616 | Europe 1178650 | |
| L | 5 | # | CTT | --T | H69X,V143D,Y144-,F490S,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Slovakia_Komarno | 1 | 87 | 4081 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Sweden_Kalmar-lan | 1 | 128 | 72124 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Switzerland_Bern | 2 | 3627 | 36417 | Europe 1178650 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | USA_Colorado | 1 | 11298 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | L18F,T95I,D253G,S477N,Q957R,D614G | USA_Colorado | 2 | 11298 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,D253G,S477N,A701V,D614G | USA_Colorado | 1 | 11298 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,D253G,S477N,Q957R,D614G | USA_Colorado | 1 | 11298 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | USA_Indiana | 1 | 6159 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | USA_Maryland | 1 | 11855 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | USA_New-York | 1 | 41683 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | USA_Tennessee | 2 | 3264 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | Q677H,D614G | USA_Texas_Houston | 1 | 25586 | 44258 | 479173 | North-America 566289 |
| L | 5 | # | CTT | -TT | D614G | USA_Wisconsin_Milwaukee | 1 | 1152 | 11366 | 479173 | North-America 566289 |
| L | 5 | # | CTT | -TT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | USA_Wisconsin_Milwaukee | 1 | 1152 | 11366 | 479173 | North-America 566289 |
| L | 5 | # | CTT | -TT | Q677H,D614G | USA_Wisconsin_Milwaukee | 1 | 1152 | 11366 | 479173 | North-America 566289 |
| L | 5 | # | CTT | -TT | T95I,D253G,E484K,A701V,D614G | USA_Wisconsin_Milwaukee | 2 | 1152 | 11366 | 479173 | North-America 566289 |
| L | 5 | # | CTT | -TT | T95I,D253G,S477N,Q957R,D614G | USA_Wisconsin_Walworth | 1 | 48 | 11366 | 479173 | North-America 566289 |
| L | 5 | # | CTT | -TT | D614G | USA_Wyoming | 4 | 8923 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | Q677H,D614G | USA_Wyoming | 1 | 8923 | 479173 | North-America 566289 | |
| L | 5 | # | CTT | -TT | T95I,D253G,S477N,Q957R,D614G | USA_Wyoming | 1 | 8923 | 479173 | North-America 566289 | |
| L | 5 | - | CTT | --- | H69-,V70-,Y144-,N501Y,A570D,E583D,P681H,T716I,S982A,D1118H,D614G | Germany_Rhineland-Palatinate | 2 | 4884 | 109037 | Europe 1178650 | |
| L | 5 | - | CTT | --- | Q675H,D614G | Mexico_Baja-California_Tijuana | 1 | 763 | 1115 | 13571 | North-America 566289 |
| L | 5 | C | CTT | TGT | D614G | USA_South-Carolina | 1 | 3074 | 479173 | North-America 566289 | |
| L | 5 | F | CTT | TTT | L452R,P681H,D614G | Angola_Luanda | 1 | 31 | 32 | Africa 13011 | |
| L | 5 | F | CTT | TTT | T95I,D253G,E484K,A701V,D614G | Antigua-and-Barbuda_Caribbean | 1 | 9 | 9 | North-America 566289 | |
| L | 5 | F | CTT | TTT | L452Q,D796Y,D614G | Argentina | 1 | 1810 | South-America 33826 | ||
| L | 5 | F | CTT | TTT | T95I,D253G,E484K,A701V,D614G | Argentina | 1 | 1810 | South-America 33826 | ||
| L | 5 | F | CTT | TTT | T95I,D253G,S477N,Q957R,D614G | Argentina | 1 | 1810 | South-America 33826 | ||
| L | 5 | F | CTT | TTT | D614G | Argentina_Buenos-Aires | 3 | 756 | 1810 | South-America 33826 | |
| L | 5 | F | CTT | TTT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118H,D614G | Argentina_Buenos-Aires | 3 | 756 | 1810 | South-America 33826 | |
| L | 5 | F | CTT | TTT | H69-,V70-,Y144-,N501Y,A570D,P681H,T716I,S982A,D1118Y,D614G | Argentina_Buenos-Aires | 1 | 756 | 1810 | South-America 33826 | |
| L | 5 | F | CTT | TTT | T95I,D253G,E484K,A701V,D614G | Argentina_Buenos-Aires | 1 | 756 | 1810 | South-America 33826 |
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