COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: Feb 2, 2026
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Collection dates: 2025-11-04 - 2026-01-30
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 18,786
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | F | 125 | 0.0066539 |
| I | 1 | 0.0000532 | ||
| P | 1 | 0.0000532 | ||
| X | 470 | 0.0250186 | ||
| P | 9 | L | 723 | 0.0384861 |
| S | 1 | 0.0000532 | ||
| X | 414 | 0.0220377 | ||
| N | 17 | - | 3 | 0.0001597 |
| M | 81 | 0.0043117 | ||
| X | 1541 | 0.0820292 | ||
| T | 19 | A | 1 | 0.0000532 |
| F | 53 | 0.0028212 | ||
| I | 15175 | 0.8077824 | ||
| L | 2 | 0.0001065 | ||
| V | 76 | 0.0040456 | ||
| X | 2462 | 0.1310550 | ||
| R | 21 | - | 51 | 0.0027148 |
| F | 35 | 0.0018631 | ||
| I | 6 | 0.0003194 | ||
| L | 14 | 0.0007452 | ||
| N | 2 | 0.0001065 | ||
| T | 15529 | 0.8266262 | ||
| V | 1 | 0.0000532 | ||
| X | 2869 | 0.1527201 | ||
| T | 22 | - | 1 | 0.0000532 |
| I | 9 | 0.0004791 | ||
| K | 1 | 0.0000532 | ||
| N | 15797 | 0.8408922 | ||
| X | 1544 | 0.0821889 | ||
| L | 24 | - | 15685 | 0.8349303 |
| F | 1 | 0.0000532 | ||
| N | 37 | 0.0019696 | ||
| R | 1 | 0.0000532 | ||
| S | 157 | 0.0083573 | ||
| T | 11 | 0.0005855 | ||
| X | 1854 | 0.0986905 | ||
| P | 25 | - | 15691 | 0.8352497 |
| N | 171 | 0.0091025 | ||
| Q | 37 | 0.0019696 | ||
| S | 3 | 0.0001597 | ||
| T | 3 | 0.0001597 | ||
| X | 1878 | 0.0999681 | ||
| P | 26 | - | 15742 | 0.8379644 |
| F | 16 | 0.0008517 | ||
| L | 721 | 0.0383796 | ||
| N | 5 | 0.0002662 | ||
| Q | 219 | 0.0116576 | ||
| X | 1787 | 0.0951240 | ||
| A | 27 | - | 25 | 0.0013308 |
| L | 1 | 0.0000532 | ||
| Q | 6 | 0.0003194 | ||
| S | 16460 | 0.8761844 | ||
| X | 1282 | 0.0682423 | ||
| S | 31 | - | 421 | 0.0224103 |
| F | 14 | 0.0007452 | ||
| L | 11 | 0.0005855 | ||
| P | 13554 | 0.7214947 | ||
| X | 193 | 0.0102736 | ||
| S | 50 | L | 17357 | 0.9239327 |
| X | 700 | 0.0372618 | ||
| F | 59 | - | 3 | 0.0001597 |
| L | 4 | 0.0002129 | ||
| S | 3738 | 0.1989780 | ||
| X | 698 | 0.0371553 | ||
| A | 67 | - | 1 | 0.0000532 |
| S | 2 | 0.0001065 | ||
| T | 1 | 0.0000532 | ||
| V | 771 | 0.0410412 | ||
| X | 627 | 0.0333759 | ||
| H | 69 | - | 17612 | 0.9375067 |
| L | 3 | 0.0001597 | ||
| P | 2 | 0.0001065 | ||
| S | 4 | 0.0002129 | ||
| X | 1150 | 0.0612158 | ||
| V | 70 | - | 17608 | 0.9372937 |
| I | 1 | 0.0000532 | ||
| X | 1132 | 0.0602576 | ||
| T | 95 | I | 747 | 0.0397637 |
| X | 809 | 0.0430640 | ||
| E | 96 | A | 5 | 0.0002662 |
| D | 694 | 0.0369424 | ||
| V | 3 | 0.0001597 | ||
| X | 650 | 0.0346002 | ||
| Y | 10 | 0.0005323 | ||
| S | 98 | - | 1 | 0.0000532 |
| F | 73 | 0.0038859 | ||
| X | 647 | 0.0344405 | ||
| I | 101 | T | 1001 | 0.0532844 |
| V | 1 | 0.0000532 | ||
| X | 662 | 0.0352390 | ||
| V | 127 | F | 17803 | 0.9476738 |
| L | 9 | 0.0004791 | ||
| X | 231 | 0.0122964 | ||
| C | 136 | - | 621 | 0.0330565 |
| X | 224 | 0.0119238 | ||
| D | 138 | - | 646 | 0.0343873 |
| G | 2 | 0.0001065 | ||
| H | 6 | 0.0003194 | ||
| X | 157 | 0.0083573 | ||
| Y | 6 | 0.0003194 | ||
| P | 139 | - | 648 | 0.0344938 |
| L | 1 | 0.0000532 | ||
| S | 14 | 0.0007452 | ||
| X | 153 | 0.0081444 | ||
| F | 140 | - | 649 | 0.0345470 |
| V | 3 | 0.0001597 | ||
| X | 153 | 0.0081444 | ||
| L | 141 | - | 650 | 0.0346002 |
| F | 2 | 0.0001065 | ||
| M | 3 | 0.0001597 | ||
| X | 154 | 0.0081976 | ||
| G | 142 | - | 650 | 0.0346002 |
| D | 17801 | 0.9475673 | ||
| N | 3 | 0.0001597 | ||
| X | 233 | 0.0124029 | ||
| Y | 3 | 0.0001597 | ||
| V | 143 | - | 652 | 0.0347067 |
| D | 1 | 0.0000532 | ||
| I | 2 | 0.0001065 | ||
| X | 171 | 0.0091025 | ||
| Y | 144 | - | 18365 | 0.9775897 |
| C | 1 | 0.0000532 | ||
| H | 1 | 0.0000532 | ||
| N | 4 | 0.0002129 | ||
| X | 362 | 0.0192697 | ||
| Y | 145 | - | 659 | 0.0350793 |
| D | 1 | 0.0000532 | ||
| F | 14 | 0.0007452 | ||
| L | 4 | 0.0002129 | ||
| N | 1 | 0.0000532 | ||
| P | 2 | 0.0001065 | ||
| R | 1 | 0.0000532 | ||
| X | 146 | 0.0077717 | ||
| H | 146 | - | 696 | 0.0370489 |
| K | 1 | 0.0000532 | ||
| Q | 25 | 0.0013308 | ||
| X | 160 | 0.0085170 | ||
| K | 147 | - | 647 | 0.0344405 |
| E | 22 | 0.0011711 | ||
| I | 21 | 0.0011179 | ||
| N | 15 | 0.0007985 | ||
| Q | 2 | 0.0001065 | ||
| R | 17 | 0.0009049 | ||
| T | 1 | 0.0000532 | ||
| X | 158 | 0.0084105 | ||
| N | 148 | - | 1 | 0.0000532 |
| D | 20 | 0.0010646 | ||
| H | 3 | 0.0001597 | ||
| I | 2 | 0.0001065 | ||
| K | 2 | 0.0001065 | ||
| S | 5 | 0.0002662 | ||
| T | 17 | 0.0009049 | ||
| X | 103 | 0.0054828 | ||
| Y | 11 | 0.0005855 | ||
| N | 149 | - | 647 | 0.0344405 |
| D | 1 | 0.0000532 | ||
| I | 3 | 0.0001597 | ||
| X | 106 | 0.0056425 | ||
| K | 150 | - | 1 | 0.0000532 |
| E | 25 | 0.0013308 | ||
| I | 15 | 0.0007985 | ||
| N | 71 | 0.0037794 | ||
| Q | 2 | 0.0001065 | ||
| R | 15 | 0.0007985 | ||
| T | 1 | 0.0000532 | ||
| X | 105 | 0.0055893 | ||
| M | 153 | I | 36 | 0.0019163 |
| K | 13 | 0.0006920 | ||
| T | 1 | 0.0000532 | ||
| V | 77 | 0.0040988 | ||
| X | 157 | 0.0083573 | ||
| F | 157 | - | 1 | 0.0000532 |
| A | 2 | 0.0001065 | ||
| L | 80 | 0.0042585 | ||
| P | 12 | 0.0006388 | ||
| Q | 3 | 0.0001597 | ||
| S | 17341 | 0.9230810 | ||
| X | 1286 | 0.0684552 | ||
| R | 158 | - | 1 | 0.0000532 |
| E | 2 | 0.0001065 | ||
| G | 17199 | 0.9155222 | ||
| I | 1 | 0.0000532 | ||
| X | 608 | 0.0323645 | ||
| N | 164 | D | 2 | 0.0001065 |
| H | 1 | 0.0000532 | ||
| K | 702 | 0.0373683 | ||
| S | 1 | 0.0000532 | ||
| X | 150 | 0.0079847 | ||
| S | 172 | F | 703 | 0.0374215 |
| X | 525 | 0.0279463 | ||
| L | 176 | F | 58 | 0.0030874 |
| P | 1 | 0.0000532 | ||
| X | 529 | 0.0281593 | ||
| K | 182 | G | 8 | 0.0004258 |
| I | 4 | 0.0002129 | ||
| N | 5 | 0.0002662 | ||
| R | 13513 | 0.7193123 | ||
| T | 2 | 0.0001065 | ||
| X | 227 | 0.0120835 | ||
| G | 184 | C | 1 | 0.0000532 |
| I | 1 | 0.0000532 | ||
| S | 3839 | 0.2043543 | ||
| T | 1 | 0.0000532 | ||
| V | 4 | 0.0002129 | ||
| X | 210 | 0.0111785 | ||
| F | 186 | - | 6 | 0.0003194 |
| L | 122 | 0.0064942 | ||
| S | 8 | 0.0004258 | ||
| X | 202 | 0.0107527 | ||
| K | 187 | - | 3 | 0.0001597 |
| I | 2 | 0.0001065 | ||
| T | 703 | 0.0374215 | ||
| X | 201 | 0.0106995 | ||
| R | 190 | D | 1 | 0.0000532 |
| G | 4 | 0.0002129 | ||
| K | 1 | 0.0000532 | ||
| S | 13683 | 0.7283615 | ||
| X | 216 | 0.0114979 | ||
| N | 211 | - | 17487 | 0.9308528 |
| G | 16 | 0.0008517 | ||
| I | 26 | 0.0013840 | ||
| K | 1 | 0.0000532 | ||
| M | 2 | 0.0001065 | ||
| T | 8 | 0.0004258 | ||
| X | 568 | 0.0302353 | ||
| Y | 1 | 0.0000532 | ||
| L | 212 | - | 18 | 0.0009582 |
| D | 3 | 0.0001597 | ||
| G | 17 | 0.0009049 | ||
| I | 17487 | 0.9308528 | ||
| R | 1 | 0.0000532 | ||
| X | 520 | 0.0276802 | ||
| V | 213 | - | 30 | 0.0015969 |
| E | 6 | 0.0003194 | ||
| G | 17866 | 0.9510274 | ||
| T | 1 | 0.0000532 | ||
| X | 193 | 0.0102736 | ||
| L | 216 | F | 17860 | 0.9507080 |
| X | 197 | 0.0104865 | ||
| G | 219 | A | 1 | 0.0000532 |
| D | 46 | 0.0024486 | ||
| I | 1 | 0.0000532 | ||
| S | 527 | 0.0280528 | ||
| X | 166 | 0.0088364 | ||
| A | 243 | - | 645 | 0.0343341 |
| N | 13 | 0.0006920 | ||
| S | 41 | 0.0021825 | ||
| V | 3 | 0.0001597 | ||
| X | 860 | 0.0457788 | ||
| L | 244 | - | 663 | 0.0352922 |
| F | 4 | 0.0002129 | ||
| N | 1 | 0.0000532 | ||
| S | 66 | 0.0035133 | ||
| X | 853 | 0.0454062 | ||
| H | 245 | - | 19 | 0.0010114 |
| N | 17249 | 0.9181838 | ||
| X | 801 | 0.0426381 | ||
| Y | 1 | 0.0000532 | ||
| P | 251 | - | 1 | 0.0000532 |
| H | 4 | 0.0002129 | ||
| L | 6 | 0.0003194 | ||
| S | 705 | 0.0375279 | ||
| T | 4 | 0.0002129 | ||
| X | 790 | 0.0420526 | ||
| D | 253 | A | 1 | 0.0000532 |
| G | 66 | 0.0035133 | ||
| H | 1 | 0.0000532 | ||
| V | 2 | 0.0001065 | ||
| X | 799 | 0.0425317 | ||
| Y | 3 | 0.0001597 | ||
| S | 256 | - | 6 | 0.0003194 |
| A | 1 | 0.0000532 | ||
| F | 1 | 0.0000532 | ||
| L | 62 | 0.0033003 | ||
| T | 1 | 0.0000532 | ||
| X | 824 | 0.0438625 | ||
| G | 257 | - | 5 | 0.0002662 |
| D | 8 | 0.0004258 | ||
| R | 3 | 0.0001597 | ||
| S | 17 | 0.0009049 | ||
| V | 56 | 0.0029809 | ||
| X | 837 | 0.0445545 | ||
| W | 258 | - | 2 | 0.0001065 |
| C | 1 | 0.0000532 | ||
| L | 60 | 0.0031939 | ||
| R | 61 | 0.0032471 | ||
| S | 1 | 0.0000532 | ||
| X | 878 | 0.0467369 | ||
| A | 264 | D | 17204 | 0.9157884 |
| G | 1 | 0.0000532 | ||
| H | 3 | 0.0001597 | ||
| X | 860 | 0.0457788 | ||
| I | 326 | V | 764 | 0.0406686 |
| X | 604 | 0.0321516 | ||
| I | 332 | V | 17564 | 0.9349516 |
| X | 494 | 0.0262962 | ||
| L | 335 | F | 376 | 0.0200149 |
| S | 16 | 0.0008517 | ||
| X | 488 | 0.0259768 | ||
| G | 339 | D | 3 | 0.0001597 |
| H | 17527 | 0.9329820 | ||
| R | 1 | 0.0000532 | ||
| X | 537 | 0.0285851 | ||
| Y | 710 | 0.0377941 | ||
| R | 346 | - | 21 | 0.0011179 |
| A | 1 | 0.0000532 | ||
| I | 52 | 0.0027680 | ||
| K | 37 | 0.0019696 | ||
| S | 9 | 0.0004791 | ||
| T | 13457 | 0.7163313 | ||
| X | 517 | 0.0275205 | ||
| A | 348 | - | 1 | 0.0000532 |
| P | 704 | 0.0374747 | ||
| S | 3 | 0.0001597 | ||
| X | 503 | 0.0267753 | ||
| K | 356 | T | 18165 | 0.9669435 |
| X | 539 | 0.0286916 | ||
| S | 371 | F | 18232 | 0.9705100 |
| X | 547 | 0.0291174 | ||
| S | 373 | P | 18269 | 0.9724795 |
| X | 511 | 0.0272011 | ||
| S | 375 | - | 2 | 0.0001065 |
| A | 21 | 0.0011179 | ||
| F | 18054 | 0.9610348 | ||
| X | 663 | 0.0352922 | ||
| T | 376 | - | 23 | 0.0012243 |
| A | 17019 | 0.9059406 | ||
| N | 293 | 0.0155967 | ||
| S | 41 | 0.0021825 | ||
| V | 1 | 0.0000532 | ||
| X | 651 | 0.0346535 | ||
| R | 403 | K | 17008 | 0.9053551 |
| X | 1741 | 0.0926754 | ||
| D | 405 | N | 18186 | 0.9680613 |
| X | 577 | 0.0307144 | ||
| R | 408 | G | 1 | 0.0000532 |
| S | 18092 | 0.9630576 | ||
| X | 668 | 0.0355584 | ||
| K | 417 | I | 2 | 0.0001065 |
| N | 17799 | 0.9474609 | ||
| T | 127 | 0.0067604 | ||
| X | 727 | 0.0386990 | ||
| A | 435 | S | 4681 | 0.2491749 |
| X | 1277 | 0.0679762 | ||
| N | 440 | K | 16827 | 0.8957202 |
| R | 740 | 0.0393910 | ||
| X | 1177 | 0.0626530 | ||
| L | 441 | F | 7 | 0.0003726 |
| I | 690 | 0.0367295 | ||
| R | 216 | 0.0114979 | ||
| X | 1170 | 0.0622804 | ||
| K | 444 | M | 1 | 0.0000532 |
| N | 1 | 0.0000532 | ||
| R | 12128 | 0.6455871 | ||
| S | 1 | 0.0000532 | ||
| T | 4 | 0.0002129 | ||
| X | 1275 | 0.0678697 | ||
| V | 445 | - | 1 | 0.0000532 |
| A | 691 | 0.0367827 | ||
| G | 1 | 0.0000532 | ||
| H | 3419 | 0.1819972 | ||
| L | 2 | 0.0001065 | ||
| P | 1664 | 0.0885766 | ||
| R | 11650 | 0.6201427 | ||
| S | 1 | 0.0000532 | ||
| X | 1319 | 0.0702119 | ||
| Y | 13 | 0.0006920 | ||
| G | 446 | D | 685 | 0.0364633 |
| N | 49 | 0.0026083 | ||
| S | 16686 | 0.8882146 | ||
| T | 46 | 0.0024486 | ||
| X | 1281 | 0.0681891 | ||
| N | 450 | D | 16946 | 0.9020547 |
| X | 1118 | 0.0595124 | ||
| L | 452 | K | 2 | 0.0001065 |
| R | 691 | 0.0367827 | ||
| W | 16917 | 0.9005110 | ||
| X | 1136 | 0.0604706 | ||
| L | 455 | F | 4 | 0.0002129 |
| S | 16996 | 0.9047163 | ||
| X | 1067 | 0.0567976 | ||
| F | 456 | - | 3 | 0.0001597 |
| L | 16996 | 0.9047163 | ||
| V | 2 | 0.0001065 | ||
| X | 1050 | 0.0558927 | ||
| N | 460 | K | 17770 | 0.9459172 |
| X | 993 | 0.0528585 | ||
| A | 475 | S | 1 | 0.0000532 |
| V | 233 | 0.0124029 | ||
| X | 741 | 0.0394443 | ||
| S | 477 | D | 5 | 0.0002662 |
| K | 3 | 0.0001597 | ||
| N | 17949 | 0.9554455 | ||
| X | 799 | 0.0425317 | ||
| T | 478 | E | 265 | 0.0141062 |
| I | 1776 | 0.0945385 | ||
| K | 12976 | 0.6907271 | ||
| L | 13 | 0.0006920 | ||
| N | 722 | 0.0384329 | ||
| Q | 3 | 0.0001597 | ||
| R | 13 | 0.0006920 | ||
| V | 15 | 0.0007985 | ||
| X | 821 | 0.0437028 | ||
| N | 481 | I | 1 | 0.0000532 |
| K | 17108 | 0.9106782 | ||
| Q | 1 | 0.0000532 | ||
| R | 8 | 0.0004258 | ||
| T | 1 | 0.0000532 | ||
| X | 894 | 0.0475886 | ||
| V | 483 | - | 16126 | 0.8584052 |
| A | 6 | 0.0003194 | ||
| D | 2 | 0.0001065 | ||
| K | 1 | 0.0000532 | ||
| R | 27 | 0.0014372 | ||
| X | 1827 | 0.0972533 | ||
| E | 484 | - | 33 | 0.0017566 |
| A | 5 | 0.0002662 | ||
| G | 1 | 0.0000532 | ||
| K | 17601 | 0.9369211 | ||
| P | 1 | 0.0000532 | ||
| S | 1 | 0.0000532 | ||
| V | 1 | 0.0000532 | ||
| X | 977 | 0.0520068 | ||
| F | 486 | - | 1 | 0.0000532 |
| D | 4 | 0.0002129 | ||
| H | 1 | 0.0000532 | ||
| L | 122 | 0.0064942 | ||
| P | 16879 | 0.8984882 | ||
| R | 1 | 0.0000532 | ||
| S | 3 | 0.0001597 | ||
| V | 1 | 0.0000532 | ||
| X | 974 | 0.0518471 | ||
| N | 487 | - | 6 | 0.0003194 |
| D | 12226 | 0.6508038 | ||
| G | 1 | 0.0000532 | ||
| X | 856 | 0.0455658 | ||
| Q | 493 | D | 1 | 0.0000532 |
| E | 17061 | 0.9081763 | ||
| L | 1 | 0.0000532 | ||
| X | 617 | 0.0328436 | ||
| G | 496 | S | 723 | 0.0384861 |
| X | 838 | 0.0446077 | ||
| Q | 498 | R | 17878 | 0.9516661 |
| X | 892 | 0.0474822 | ||
| N | 501 | H | 1 | 0.0000532 |
| X | 850 | 0.0452465 | ||
| Y | 17915 | 0.9536357 | ||
| Y | 505 | F | 1 | 0.0000532 |
| H | 17166 | 0.9137656 | ||
| X | 845 | 0.0449803 | ||
| K | 529 | N | 726 | 0.0386458 |
| Q | 3 | 0.0001597 | ||
| R | 14 | 0.0007452 | ||
| T | 935 | 0.0497711 | ||
| X | 50 | 0.0026616 | ||
| E | 554 | D | 721 | 0.0383796 |
| K | 18018 | 0.9591185 | ||
| N | 2 | 0.0001065 | ||
| Q | 1 | 0.0000532 | ||
| R | 2 | 0.0001065 | ||
| X | 36 | 0.0019163 | ||
| A | 570 | V | 18039 | 0.9602363 |
| X | 19 | 0.0010114 | ||
| T | 572 | I | 13298 | 0.7078676 |
| X | 19 | 0.0010114 | ||
| A | 575 | S | 703 | 0.0374215 |
| X | 11 | 0.0005855 | ||
| E | 583 | D | 700 | 0.0372618 |
| X | 200 | 0.0106462 | ||
| T | 604 | I | 882 | 0.0469499 |
| X | 196 | 0.0104333 | ||
| P | 621 | - | 15 | 0.0007985 |
| F | 3 | 0.0001597 | ||
| H | 1 | 0.0000532 | ||
| S | 17861 | 0.9507612 | ||
| X | 196 | 0.0104333 | ||
| H | 625 | R | 703 | 0.0374215 |
| X | 187 | 0.0099542 | ||
| N | 641 | - | 5 | 0.0002662 |
| D | 1 | 0.0000532 | ||
| H | 2 | 0.0001065 | ||
| I | 1 | 0.0000532 | ||
| K | 736 | 0.0391781 | ||
| T | 22 | 0.0011711 | ||
| X | 796 | 0.0423720 | ||
| Y | 3 | 0.0001597 | ||
| V | 642 | - | 1 | 0.0000532 |
| A | 5 | 0.0002662 | ||
| F | 4 | 0.0002129 | ||
| G | 746 | 0.0397104 | ||
| I | 1 | 0.0000532 | ||
| X | 806 | 0.0429043 | ||
| E | 654 | D | 1 | 0.0000532 |
| K | 694 | 0.0369424 | ||
| Q | 5 | 0.0002662 | ||
| V | 4 | 0.0002129 | ||
| X | 824 | 0.0438625 | ||
| H | 655 | F | 2 | 0.0001065 |
| X | 835 | 0.0444480 | ||
| Y | 17947 | 0.9553391 | ||
| I | 670 | L | 16 | 0.0008517 |
| M | 56 | 0.0029809 | ||
| V | 2 | 0.0001065 | ||
| X | 996 | 0.0530182 | ||
| S | 673 | T | 266 | 0.0141595 |
| X | 1034 | 0.0550410 | ||
| Q | 677 | E | 1 | 0.0000532 |
| H | 298 | 0.0158629 | ||
| K | 2 | 0.0001065 | ||
| L | 8 | 0.0004258 | ||
| P | 2 | 0.0001065 | ||
| R | 74 | 0.0039391 | ||
| W | 1 | 0.0000532 | ||
| X | 245 | 0.0130416 | ||
| Y | 1 | 0.0000532 | ||
| T | 678 | - | 2 | 0.0001065 |
| I | 123 | 0.0065474 | ||
| P | 1 | 0.0000532 | ||
| S | 1 | 0.0000532 | ||
| X | 233 | 0.0124029 | ||
| N | 679 | - | 1 | 0.0000532 |
| K | 15934 | 0.8481848 | ||
| M | 6 | 0.0003194 | ||
| R | 2375 | 0.1264239 | ||
| T | 12 | 0.0006388 | ||
| X | 300 | 0.0159693 | ||
| S | 680 | - | 73 | 0.0038859 |
| A | 18 | 0.0009582 | ||
| F | 732 | 0.0389652 | ||
| L | 3 | 0.0001597 | ||
| P | 1752 | 0.0932609 | ||
| X | 277 | 0.0147450 | ||
| Y | 88 | 0.0046843 | ||
| P | 681 | - | 186 | 0.0099010 |
| H | 778 | 0.0414138 | ||
| L | 2 | 0.0001065 | ||
| R | 17402 | 0.9263281 | ||
| S | 3 | 0.0001597 | ||
| X | 315 | 0.0167678 | ||
| R | 683 | L | 49 | 0.0026083 |
| Q | 50 | 0.0026616 | ||
| W | 31 | 0.0016502 | ||
| X | 276 | 0.0146918 | ||
| A | 684 | - | 45 | 0.0023954 |
| R | 6 | 0.0003194 | ||
| S | 1 | 0.0000532 | ||
| T | 2 | 0.0001065 | ||
| V | 21 | 0.0011179 | ||
| X | 505 | 0.0268817 | ||
| A | 688 | D | 698 | 0.0371553 |
| F | 1 | 0.0000532 | ||
| P | 1 | 0.0000532 | ||
| S | 2 | 0.0001065 | ||
| T | 2 | 0.0001065 | ||
| V | 192 | 0.0102204 | ||
| X | 539 | 0.0286916 | ||
| S | 704 | A | 3 | 0.0001597 |
| L | 800 | 0.0425849 | ||
| X | 475 | 0.0252848 | ||
| N | 764 | K | 18275 | 0.9727989 |
| X | 508 | 0.0270414 | ||
| T | 791 | A | 121 | 0.0064410 |
| I | 14 | 0.0007452 | ||
| X | 611 | 0.0325242 | ||
| K | 795 | T | 673 | 0.0358246 |
| X | 626 | 0.0333227 | ||
| D | 796 | F | 1 | 0.0000532 |
| H | 27 | 0.0014372 | ||
| X | 646 | 0.0343873 | ||
| Y | 18098 | 0.9633770 | ||
| A | 845 | D | 1 | 0.0000532 |
| S | 142 | 0.0075588 | ||
| T | 1 | 0.0000532 | ||
| V | 5 | 0.0002662 | ||
| X | 583 | 0.0310337 | ||
| A | 852 | K | 688 | 0.0366230 |
| S | 1 | 0.0000532 | ||
| T | 1 | 0.0000532 | ||
| V | 2 | 0.0001065 | ||
| X | 573 | 0.0305014 | ||
| S | 939 | F | 17454 | 0.9290961 |
| L | 2 | 0.0001065 | ||
| X | 1291 | 0.0687214 | ||
| G | 946 | K | 4 | 0.0002129 |
| R | 209 | 0.0111253 | ||
| X | 990 | 0.0526988 | ||
| Q | 954 | H | 17739 | 0.9442670 |
| N | 3 | 0.0001597 | ||
| R | 1 | 0.0000532 | ||
| X | 1005 | 0.0534973 | ||
| Y | 18 | 0.0009582 | ||
| A | 958 | D | 3 | 0.0001597 |
| S | 218 | 0.0116044 | ||
| X | 1066 | 0.0567444 | ||
| N | 969 | K | 17546 | 0.9339934 |
| X | 1223 | 0.0651017 | ||
| D | 1084 | - | 1 | 0.0000532 |
| A | 1 | 0.0000532 | ||
| E | 1 | 0.0000532 | ||
| G | 493 | 0.0262429 | ||
| H | 3 | 0.0001597 | ||
| N | 1 | 0.0000532 | ||
| X | 8 | 0.0004258 | ||
| Y | 4 | 0.0002129 | ||
| K | 1086 | R | 162 | 0.0086234 |
| X | 52 | 0.0027680 | ||
| V | 1104 | L | 871 | 0.0463643 |
| X | 42 | 0.0022357 | ||
| P | 1143 | F | 37 | 0.0019696 |
| L | 17892 | 0.9524114 | ||
| V | 1 | 0.0000532 | ||
| X | 94 | 0.0050037 | ||
| D | 1146 | G | 71 | 0.0037794 |
| H | 2 | 0.0001065 | ||
| N | 2 | 0.0001065 | ||
| X | 54 | 0.0028745 | ||
| P | 1162 | L | 21 | 0.0011179 |
| R | 41 | 0.0021825 | ||
| S | 24 | 0.0012775 | ||
| T | 1 | 0.0000532 | ||
| X | 59 | 0.0031406 | ||
| A | 1174 | P | 1 | 0.0000532 |
| T | 1 | 0.0000532 | ||
| V | 248 | 0.0132013 | ||
| X | 199 | 0.0105930 | ||
| D | 1184 | E | 726 | 0.0386458 |
| G | 1 | 0.0000532 | ||
| N | 5 | 0.0002662 | ||
| Q | 1 | 0.0000532 | ||
| X | 177 | 0.0094219 | ||
| Q | 1201 | H | 3 | 0.0001597 |
| K | 48 | 0.0025551 | ||
| R | 16 | 0.0008517 | ||
| X | 501 | 0.0266688 | ||
| E | 1202 | G | 1 | 0.0000532 |
| K | 2 | 0.0001065 | ||
| Q | 74 | 0.0039391 | ||
| X | 502 | 0.0267220 | ||
| V | 1264 | A | 1 | 0.0000532 |
| L | 1483 | 0.0789418 | ||
| M | 1 | 0.0000532 | ||
| X | 376 | 0.0200149 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478E,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D1146G,V1264L,D614G | Canada_Ontario | 2 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 4 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 21 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,V642G,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Saskatchewan | 3 | 197 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,K529N,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Illinois_Cook | 1 | 286 | 387 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Italy | 1 | 427 | Europe 6099 | ||
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,A67X,H69X,V70X,T95X,E96X,S98X,I101X,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | Spain_Galicia_A-Coruna | 1 | 6 | 8 | 266 | Europe 6099 |
| L | 5 | F | L5F,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440X,L441X,K444X,V445X,G446X,N450D,L452W,F456X,N460K,S477N,T478K,N481K,V483-,E484K,F486S,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 501 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Thuringia | 1 | 6 | 789 | Europe 6099 | |
| L | 5 | F | L5F,P9L,R21T,P26L,A67V,H69-,V70-,T95I,S98F,I101T,C136-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,H146-,K147-,N149-,F157S,N164K,S172F,K187T,N211-,L212I,A243-,L244-,P251S,I326V,G339Y,A348P,K356T,S371F,S373P,R403K,D405N,R408S,K417N,A435S,N440R,V445A,G446D,L452W,N460K,S477N,T478N,E484K,G496S,Q498R,N501Y,K529N,E554D,A575S,E583D,H625R,N641K,V642G,E654K,H655Y,N679R,P681H,A688D,S704L,N764K,K795T,D796Y,A852K,S939F,Q954H,N969K,D1184E,D614G | Germany_North-Rhine-Westphalia | 1 | 123 | 789 | Europe 6099 | |
| L | 5 | F | L5F,S31P,S50L,H69-,V70-,V127F,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Catalunya_Manresa | 1 | 48 | 106 | 266 | Europe 6099 |
| L | 5 | F | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I326X,I332V,G339H,K356X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,A1174X,D1184X,Q1201X,E1202X,V1264L,D614G | Sweden_Vasternorrland | 1 | 10 | 202 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,K529T,E554K,A570V,T572I,T604I,P621S,H655Y,N679K,P681-,A684X,N764K,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | Canada_Alberta | 1 | 489 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,K529T,E554K,A570V,T572I,T604I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | Canada_Alberta | 2 | 489 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Minnesota_Minneota | 4 | 694 | 694 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24S,P25N,P26Q,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Luxembourg | 1 | 283 | Europe 6099 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,T678X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,S172X,L176X,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405X,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,N487X,Q493X,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,D1084G,P1143L,D614G | Italy_Trieste | 1 | 30 | 427 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,N148T,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445Y,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157L,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Finland | 1 | 59 | Europe 6099 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Illinois_Cook | 1 | 286 | 387 | 4915 | North-America 10077 |
| L | 5 | F | L5F,P9L,R21T,P26L,A67V,H69-,V70-,T95I,S98F,I101T,C136-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,H146-,K147-,N149-,F157S,N164K,S172F,K187T,N211-,L212I,A243-,L244-,P251S,I326V,G339Y,A348P,K356T,S371F,S373P,R403K,D405N,R408S,K417N,A435S,N440R,V445A,G446D,L452W,N460K,S477N,T478N,E484K,G496S,Q498R,N501Y,K529N,E554D,A575S,E583D,H625R,N641K,V642G,E654K,H655Y,N679R,P681H,A688D,S704L,N764K,K795T,D796Y,A852K,S939F,Q954H,N969K,D1184E,D614G | Germany_Berlin | 1 | 114 | 789 | Europe 6099 | |
| L | 5 | F | L5F,N17X,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Russia_Penza-Region_Penza | 1 | 16 | 16 | 279 | Europe 6099 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,V213G,L216F,A243X,L244X,H245X,P251X,D253X,S256X,G257X,W258X,A264X,I326V,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Chile_Maule_Talca | 1 | 73 | 82 | 522 | South-America 848 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,L335F,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417T,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Arizona_Maricopa | 1 | 35 | 87 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 501 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 501 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Alberta | 1 | 489 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Alberta | 2 | 489 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157X,R158X,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,Q677H,N679K,P681R,S704L,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 1 | 259 | Europe 6099 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 1 | 156 | Asia 593 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_Wales | 1 | 330 | 1204 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50X,F59X,A67X,H69X,V70X,T95X,E96X,S98X,I101X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Minnesota_Minneota | 3 | 694 | 694 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,I101T,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376N,R403K,D405N,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,S673T,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | Australia_Queensland | 1 | 343 | 908 | Oceania 1122 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,L244F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445P,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Bavaria | 1 | 332 | 789 | Europe 6099 | |
| L | 5 | F | L5F,N17X,T19X,R21X,T22X,L24X,P25X,P26X,S31P,S50L,H69X,V127F,G142D,Y144-,F157X,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484X,F486D,N487-,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York_Allegany | 1 | 25 | 868 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-Hampshire | 1 | 93 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24X,P25X,P26X,A27X,S31P,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,K182R,R190S,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417X,A435X,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478E,N481K,V483X,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,V1264L,D614G | USA_Kentucky | 1 | 92 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19X,R21X,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,E654X,H655X,I670X,S673X,N679K,P681R,N764K,T791X,K795X,D796X,A845X,A852X,S939F,Q954H,N969K,P1143L,Q1201X,E1202X,V1264X,D614G | USA_Colorado | 1 | 830 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19V,R21X,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441R,V445P,G446S,N450D,L452W,L455S,F456L,N460K,A475V,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,T791A,D796Y,S939X,G946X,Q954X,A958X,N969X,P1143L,V1264L,D614G | USA_Colorado | 1 | 830 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,I101T,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376N,R403K,D405N,R408S,K417N,N440K,V445P,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,S673T,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | Australia_Western-Australia | 1 | 128 | 908 | Oceania 1122 | |
| L | 5 | F | L5F,T19I,R21X,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441R,V445P,G446S,N450D,L452W,L455S,F456L,N460K,A475V,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,S680P,P681R,N764K,T791A,D796Y,S939X,G946X,Q954X,A958X,N969X,P1143L,D614G | USA_Colorado | 1 | 830 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483X,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 1 | 259 | Europe 6099 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182X,G184X,F186X,K187X,R190X,N211X,L212X,V213X,L216X,G219X,A243X,L244X,H245X,P251X,D253X,S256X,G257X,W258X,A264X,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,N487X,Q493X,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Poland_Wielkopolskie_Poznanski | 1 | 37 | 39 | 148 | Europe 6099 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,L244F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445P,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,G946X,Q954X,N969K,P1143L,D614G | Germany_Bavaria | 1 | 332 | 789 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50X,F59X,A67X,H69X,V70X,T95X,E96X,S98X,I101X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Minnesota_Minneota | 1 | 694 | 694 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50X,F59X,A67X,H69X,V70X,T95X,E96X,S98X,I101X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939X,G946X,Q954X,A958X,N969X,P1143L,D614G | USA_Minnesota_Minneota | 2 | 694 | 694 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Minnesota_Minneota | 1 | 694 | 694 | 4915 | North-America 10077 |
| L | 5 | F | L5F,N17X,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Massachusetts | 1 | 141 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,P9L,R21T,P26L,A67V,H69X,V70X,T95I,I101T,C136X,D138X,P139X,F140X,L141X,G142X,V143X,Y144X,Y145X,H146X,K147X,F157S,N164K,S172F,K187T,N211-,L212I,A243-,L244-,P251S,I326X,G339Y,A348P,K356T,S371F,S373P,R403X,D405N,R408S,K417N,A435S,N440R,V445A,G446D,L452W,N460K,S477N,T478N,E484K,G496S,Q498R,N501Y,K529N,E554D,A575S,E583D,H625R,N641K,V642G,E654K,H655Y,N679R,P681H,A688D,S704L,N764K,K795T,D796Y,A852K,S939F,Q954H,N969K,D1184E,D614G | United-Kingdom_England | 1 | 259 | 1204 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445P,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Netherlands_Noord-Holland | 1 | 93 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Minas-Gerais_Muriae | 1 | 1 | 40 | 216 | South-America 848 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,K529T,E554K,A570V,T572I,T604I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | USA_Nebraska | 1 | 250 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,Q677H,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 501 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Texas_Denton | 1 | 2 | 9 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,G219S,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 4 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,E654X,H655X,I670X,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,I670X,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,K529T,E554K,A570V,T572I,T604I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | Canada_Ontario | 2 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481X,V483X,E484X,F486X,N487X,Q493X,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | Netherlands_Gelderland | 2 | 101 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Netherlands_Noord-Brabant | 1 | 118 | 735 | Europe 6099 | |
| L | 5 | F | L5F,P9L,R21T,P26L,A67V,H69-,V70-,T95I,I101T,C136-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,H146-,K147-,N149-,F157S,N164K,S172F,K187T,N211-,L212I,A243-,L244-,P251S,I326V,G339Y,A348P,K356T,S371F,S373P,R403K,D405N,R408S,K417N,A435S,N440R,V445A,G446D,L452W,N460K,S477N,T478N,E484K,G496S,Q498R,N501Y,K529N,E554D,A575S,E583D,H625R,N641K,V642G,E654K,H655Y,N679R,P681H,A688D,S704L,N764K,K795T,D796Y,A852K,S939F,Q954H,N969K,D1184E,D614G | Netherlands_Overijssel | 1 | 69 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,T95X,V127F,G142D,Y144-,F157S,R158G,S172X,L176X,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455S,F456L,N460K,A475X,S477X,T478X,N481X,V483X,E484X,F486X,N487X,Q493E,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Maryland | 1 | 252 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Illinois_Adams | 1 | 10 | 387 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19V,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441R,V445P,G446S,N450D,L452W,L455S,F456L,N460K,A475V,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,T791A,D796Y,S939F,Q954H,N969K,P1143L,V1264L,D614G | USA_Nebraska | 1 | 250 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146K,F157L,V213E,G339H,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,T572I,H655Y,N679K,P681H,N764K,D796H,Q954H,N969K,D614G | USA_Oregon | 1 | 49 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,P9L,R21T,P26L,A67V,H69-,V70-,T95I,I101T,C136-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,H146-,K147-,N149-,F157S,N164K,S172F,K187T,N211-,L212I,A243-,L244-,P251S,I326V,G339Y,A348P,K356T,S371F,S373P,R403K,D405N,R408S,K417N,A435S,N440R,V445A,G446D,L452W,N460K,S477N,T478N,E484K,G496S,Q498R,N501Y,K529N,E554D,A575S,E583D,H625R,N641K,V642G,E654K,H655Y,N679R,P681H,A688D,S704L,N764K,K795T,D796Y,A852K,S939F,Q954H,N969K,D1184E,D614G | Netherlands_Utrecht | 1 | 86 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147Q,V213G,G339D,S371X,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q493L,Q498R,N501Y,Y505H,P621S,V642G,H655Y,N679K,P681H,N764K,D796Y,S939F,Q954H,N969K,D614G | USA_Nevada_Clark | 1 | 20 | 21 | 4915 | North-America 10077 |
| L | 5 | F | L5F,N17X,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S50X,F59X,A67X,H69X,V70X,T95X,E96X,S98X,I101X,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,G946R,Q954H,A958X,N969X,P1143L,D614G | Germany_Munich | 1 | 38 | 789 | Europe 6099 | |
| L | 5 | F | L5F,N17X,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484X,F486X,N487X,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Munich | 1 | 38 | 789 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_Wales | 1 | 330 | 1204 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,P681R,N764K,D796Y,S939F,Q954H,N969K,D1084G,P1143L,D614G | Netherlands_Gelderland | 1 | 101 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,A958S,N969K,P1143L,D614G | Netherlands_Noord-Holland | 1 | 93 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441I,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,T791X,K795X,D796X,A845X,A852X,S939F,Q954H,N969K,P1143L,D614G | USA_New-York | 1 | 868 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Illinois_Cook | 1 | 286 | 387 | 4915 | North-America 10077 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,R683Q,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Provence-Alpes-Cote-d-Azur_Alpes-Maritimes | 1 | 30 | 107 | 611 | Europe 6099 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417X,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Michigan | 1 | 38 | 4915 | North-America 10077 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,I101T,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376N,R403K,D405N,R408S,K417N,N440K,V445P,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,S673T,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | Australia_South-Australia | 1 | 143 | 908 | Oceania 1122 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Netherlands_Overijssel | 1 | 69 | 735 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Berlin | 1 | 114 | 789 | Europe 6099 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Italy | 2 | 427 | Europe 6099 | ||
| L | 5 | I | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Espirito-Santo_Pinheiros | 1 | 1 | 57 | 216 | South-America 848 |
| L | 5 | P | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | P9X,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681-,A684X,A688X,S704X,N764K,D796Y,S939F,Q954H,N969X,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | P9X,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | P9X,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681-,A684X,A688X,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I326V,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 23 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 3 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157L,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,L335F,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,I670X,S673X,N679K,P681R,R683L,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 2 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1202Q,D614G | Canada_Ontario | 5 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31X,S50X,F59X,A67X,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,P251X,D253X,S256X,G257X,W258X,A264X,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681-,A684X,A688X,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,T19I,R21T,T22N,L24X,P26X,A27X,S31P,S50L,H69X,V70X,V127X,G142D,Y144-,F157X,R158X,K182R,R190S,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,A435S,N440K,L441R,K444R,V445P,G446S,N450D,L452W,L455S,F456L,N460K,A475V,S477N,T478K,N481K,V483X,E484X,F486X,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679X,P681-,A684X,A688X,N764X,D796Y,S939X,G946X,Q954X,A958X,N969X,K1086X,P1143L,A1174X,D614G | Canada_Ontario | 1 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | P9X,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1202Q,D614G | Canada_Ontario | 2 | 4003 | 5135 | North-America 10077 | |
| L | 5 | X | L5X,P9X,N17X,T19X,R21X,T22X,L24X,P26X,A27X,S31X,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,E1202Q,D614G | Canada_Ontario | 2 | 4003 | 5135 | North-America 10077 |
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last modified: Sun Jan 22 23:41 2023
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