COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: May 19, 2022
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Collection dates: 2021-11-20 - 2022-05-17
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 2,817,963
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | # | 113 | 0.0000401 |
| - | 49 | 0.0000174 | ||
| F | 32966 | 0.0116985 | ||
| I | 74 | 0.0000263 | ||
| P | 1 | 0.0000004 | ||
| S | 1 | 0.0000004 | ||
| V | 1 | 0.0000004 | ||
| X | 1664 | 0.0005905 | ||
| Y | 1 | 0.0000004 | ||
| L | 18 | - | 16 | 0.0000057 |
| F | 7304 | 0.0025919 | ||
| H | 7 | 0.0000025 | ||
| I | 95 | 0.0000337 | ||
| K | 2 | 0.0000007 | ||
| P | 1169 | 0.0004148 | ||
| R | 16 | 0.0000057 | ||
| S | 5 | 0.0000018 | ||
| T | 1 | 0.0000004 | ||
| V | 52 | 0.0000185 | ||
| X | 257 | 0.0000912 | ||
| T | 19 | # | 2 | 0.0000007 |
| - | 14 | 0.0000050 | ||
| A | 13 | 0.0000046 | ||
| G | 43 | 0.0000153 | ||
| I | 978358 | 0.3471862 | ||
| K | 153 | 0.0000543 | ||
| L | 428 | 0.0001519 | ||
| P | 1 | 0.0000004 | ||
| R | 706947 | 0.2508716 | ||
| S | 24 | 0.0000085 | ||
| V | 1 | 0.0000004 | ||
| X | 4263 | 0.0015128 | ||
| L | 24 | $ | 3 | 0.0000011 |
| - | 944096 | 0.3350278 | ||
| F | 686 | 0.0002434 | ||
| I | 17 | 0.0000060 | ||
| M | 1 | 0.0000004 | ||
| S | 865 | 0.0003070 | ||
| V | 28 | 0.0000099 | ||
| X | 4732 | 0.0016792 | ||
| Y | 1 | 0.0000004 | ||
| P | 25 | # | 3 | 0.0000011 |
| - | 945182 | 0.3354132 | ||
| A | 3 | 0.0000011 | ||
| H | 18 | 0.0000064 | ||
| L | 299 | 0.0001061 | ||
| R | 5 | 0.0000018 | ||
| S | 602 | 0.0002136 | ||
| T | 561 | 0.0001991 | ||
| X | 4986 | 0.0017694 | ||
| P | 26 | # | 3290 | 0.0011675 |
| $ | 3 | 0.0000011 | ||
| - | 941180 | 0.3339930 | ||
| A | 1 | 0.0000004 | ||
| C | 1 | 0.0000004 | ||
| D | 1 | 0.0000004 | ||
| F | 5 | 0.0000018 | ||
| H | 184 | 0.0000653 | ||
| I | 663 | 0.0002353 | ||
| L | 1266 | 0.0004493 | ||
| N | 22 | 0.0000078 | ||
| Q | 41 | 0.0000145 | ||
| R | 50 | 0.0000177 | ||
| S | 2220 | 0.0007878 | ||
| T | 28 | 0.0000099 | ||
| V | 1 | 0.0000004 | ||
| X | 5437 | 0.0019294 | ||
| A | 27 | # | 12 | 0.0000043 |
| - | 1053 | 0.0003737 | ||
| D | 12 | 0.0000043 | ||
| E | 12 | 0.0000043 | ||
| G | 10 | 0.0000035 | ||
| I | 4 | 0.0000014 | ||
| K | 32 | 0.0000114 | ||
| P | 12 | 0.0000043 | ||
| S | 942812 | 0.3345722 | ||
| T | 147 | 0.0000522 | ||
| V | 841 | 0.0002984 | ||
| X | 8099 | 0.0028741 | ||
| Y | 1 | 0.0000004 | ||
| V | 36 | # | 4 | 0.0000014 |
| - | 5 | 0.0000018 | ||
| A | 4 | 0.0000014 | ||
| F | 10336 | 0.0036679 | ||
| I | 107 | 0.0000380 | ||
| L | 5 | 0.0000018 | ||
| X | 107 | 0.0000380 | ||
| A | 67 | # | 4 | 0.0000014 |
| - | 200 | 0.0000710 | ||
| D | 25 | 0.0000089 | ||
| F | 86 | 0.0000305 | ||
| G | 15 | 0.0000053 | ||
| I | 1 | 0.0000004 | ||
| L | 3 | 0.0000011 | ||
| P | 2 | 0.0000007 | ||
| S | 1221 | 0.0004333 | ||
| T | 21 | 0.0000075 | ||
| V | 1120011 | 0.3974541 | ||
| X | 1948 | 0.0006913 | ||
| H | 69 | # | 232 | 0.0000823 |
| - | 1114309 | 0.3954307 | ||
| D | 5 | 0.0000018 | ||
| F | 2 | 0.0000007 | ||
| I | 5 | 0.0000018 | ||
| L | 116 | 0.0000412 | ||
| N | 205 | 0.0000727 | ||
| P | 3 | 0.0000011 | ||
| Q | 2 | 0.0000007 | ||
| R | 73 | 0.0000259 | ||
| S | 2 | 0.0000007 | ||
| T | 117 | 0.0000415 | ||
| X | 9746 | 0.0034585 | ||
| Y | 1633 | 0.0005795 | ||
| V | 70 | # | 3370 | 0.0011959 |
| - | 1110538 | 0.3940925 | ||
| A | 328 | 0.0001164 | ||
| D | 2 | 0.0000007 | ||
| F | 1486 | 0.0005273 | ||
| G | 32 | 0.0000114 | ||
| I | 3818 | 0.0013549 | ||
| K | 11 | 0.0000039 | ||
| L | 123 | 0.0000436 | ||
| T | 12 | 0.0000043 | ||
| X | 9660 | 0.0034280 | ||
| T | 95 | # | 1 | 0.0000004 |
| - | 5 | 0.0000018 | ||
| A | 77 | 0.0000273 | ||
| F | 5 | 0.0000018 | ||
| I | 1477113 | 0.5241776 | ||
| L | 18 | 0.0000064 | ||
| M | 11 | 0.0000039 | ||
| N | 175 | 0.0000621 | ||
| P | 3 | 0.0000011 | ||
| S | 81 | 0.0000287 | ||
| V | 137 | 0.0000486 | ||
| X | 8167 | 0.0028982 | ||
| S | 112 | - | 2 | 0.0000007 |
| A | 66 | 0.0000234 | ||
| F | 11 | 0.0000039 | ||
| L | 10228 | 0.0036296 | ||
| M | 2 | 0.0000007 | ||
| P | 79 | 0.0000280 | ||
| T | 4 | 0.0000014 | ||
| W | 2 | 0.0000007 | ||
| X | 289 | 0.0001026 | ||
| G | 142 | # | 28 | 0.0000099 |
| - | 1357 | 0.0004816 | ||
| A | 11 | 0.0000039 | ||
| D | 2705209 | 0.9599874 | ||
| E | 54 | 0.0000192 | ||
| H | 13 | 0.0000046 | ||
| I | 1 | 0.0000004 | ||
| L | 1 | 0.0000004 | ||
| N | 41 | 0.0000145 | ||
| P | 1 | 0.0000004 | ||
| R | 1 | 0.0000004 | ||
| S | 2 | 0.0000007 | ||
| T | 37 | 0.0000131 | ||
| V | 47 | 0.0000167 | ||
| X | 46262 | 0.0164168 | ||
| Y | 52 | 0.0000185 | ||
| V | 143 | # | 26 | 0.0000092 |
| - | 1111557 | 0.3944541 | ||
| A | 34 | 0.0000121 | ||
| D | 78 | 0.0000277 | ||
| F | 257 | 0.0000912 | ||
| G | 3 | 0.0000011 | ||
| H | 1 | 0.0000004 | ||
| I | 136 | 0.0000483 | ||
| K | 1 | 0.0000004 | ||
| L | 3 | 0.0000011 | ||
| P | 417 | 0.0001480 | ||
| S | 1 | 0.0000004 | ||
| T | 12 | 0.0000043 | ||
| X | 8979 | 0.0031863 | ||
| Y | 144 | # | 171 | 0.0000607 |
| $ | 2 | 0.0000007 | ||
| - | 1113762 | 0.3952366 | ||
| C | 5 | 0.0000018 | ||
| D | 1 | 0.0000004 | ||
| F | 24 | 0.0000085 | ||
| H | 34 | 0.0000121 | ||
| I | 1 | 0.0000004 | ||
| K | 1 | 0.0000004 | ||
| L | 11 | 0.0000039 | ||
| N | 4 | 0.0000014 | ||
| P | 619 | 0.0002197 | ||
| Q | 116 | 0.0000412 | ||
| R | 15 | 0.0000053 | ||
| S | 17 | 0.0000060 | ||
| T | 3 | 0.0000011 | ||
| W | 2 | 0.0000007 | ||
| X | 8622 | 0.0030597 | ||
| Y | 145 | # | 81 | 0.0000287 |
| - | 1110538 | 0.3940925 | ||
| C | 6 | 0.0000021 | ||
| D | 435 | 0.0001544 | ||
| F | 1 | 0.0000004 | ||
| H | 65504 | 0.0232452 | ||
| K | 2 | 0.0000007 | ||
| N | 305 | 0.0001082 | ||
| P | 2 | 0.0000007 | ||
| Q | 1 | 0.0000004 | ||
| T | 1 | 0.0000004 | ||
| V | 1 | 0.0000004 | ||
| W | 1 | 0.0000004 | ||
| X | 8136 | 0.0028872 | ||
| E | 156 | # | 607 | 0.0002154 |
| - | 265 | 0.0000940 | ||
| A | 164 | 0.0000582 | ||
| D | 69 | 0.0000245 | ||
| F | 1 | 0.0000004 | ||
| G | 697012 | 0.2473460 | ||
| K | 20 | 0.0000071 | ||
| Q | 76 | 0.0000270 | ||
| V | 51 | 0.0000181 | ||
| X | 7823 | 0.0027761 | ||
| F | 157 | # | 34 | 0.0000121 |
| - | 698296 | 0.2478017 | ||
| C | 2 | 0.0000007 | ||
| G | 1 | 0.0000004 | ||
| L | 1913 | 0.0006789 | ||
| S | 763 | 0.0002708 | ||
| V | 1 | 0.0000004 | ||
| X | 8609 | 0.0030550 | ||
| Y | 5 | 0.0000018 | ||
| R | 158 | # | 427 | 0.0001515 |
| $ | 11 | 0.0000039 | ||
| - | 697148 | 0.2473943 | ||
| F | 1 | 0.0000004 | ||
| G | 281 | 0.0000997 | ||
| I | 12 | 0.0000043 | ||
| K | 12 | 0.0000043 | ||
| M | 1 | 0.0000004 | ||
| S | 28 | 0.0000099 | ||
| T | 6 | 0.0000021 | ||
| X | 9231 | 0.0032758 | ||
| Y | 5 | 0.0000018 | ||
| G | 181 | # | 2 | 0.0000007 |
| - | 3 | 0.0000011 | ||
| A | 762 | 0.0002704 | ||
| E | 454 | 0.0001611 | ||
| L | 7 | 0.0000025 | ||
| R | 669 | 0.0002374 | ||
| V | 7302 | 0.0025912 | ||
| X | 228 | 0.0000809 | ||
| N | 211 | # | 213 | 0.0000756 |
| - | 1096520 | 0.3891180 | ||
| A | 1 | 0.0000004 | ||
| D | 30 | 0.0000106 | ||
| E | 78 | 0.0000277 | ||
| G | 86 | 0.0000305 | ||
| H | 27 | 0.0000096 | ||
| I | 559 | 0.0001984 | ||
| K | 415 | 0.0001473 | ||
| R | 1 | 0.0000004 | ||
| S | 172 | 0.0000610 | ||
| T | 7 | 0.0000025 | ||
| V | 1 | 0.0000004 | ||
| X | 12679 | 0.0044993 | ||
| Y | 16 | 0.0000057 | ||
| L | 212 | $ | 80 | 0.0000284 |
| - | 8691 | 0.0030841 | ||
| A | 2 | 0.0000007 | ||
| C | 441 | 0.0001565 | ||
| F | 63 | 0.0000224 | ||
| G | 1 | 0.0000004 | ||
| I | 1091965 | 0.3875015 | ||
| K | 5 | 0.0000018 | ||
| M | 2 | 0.0000007 | ||
| N | 1 | 0.0000004 | ||
| P | 6 | 0.0000021 | ||
| R | 7 | 0.0000025 | ||
| S | 2903 | 0.0010302 | ||
| T | 62 | 0.0000220 | ||
| V | 71 | 0.0000252 | ||
| X | 9066 | 0.0032172 | ||
| V | 213 | # | 7 | 0.0000025 |
| $ | 1 | 0.0000004 | ||
| - | 451 | 0.0001600 | ||
| A | 680 | 0.0002413 | ||
| D | 19 | 0.0000067 | ||
| E | 413 | 0.0001466 | ||
| F | 6 | 0.0000021 | ||
| G | 981945 | 0.3484592 | ||
| L | 655 | 0.0002324 | ||
| M | 97 | 0.0000344 | ||
| R | 7 | 0.0000025 | ||
| S | 4058 | 0.0014400 | ||
| T | 1 | 0.0000004 | ||
| X | 1884 | 0.0006686 | ||
| A | 222 | # | 1 | 0.0000004 |
| - | 1 | 0.0000004 | ||
| F | 4 | 0.0000014 | ||
| I | 17 | 0.0000060 | ||
| L | 1 | 0.0000004 | ||
| P | 55 | 0.0000195 | ||
| S | 1084 | 0.0003847 | ||
| T | 61 | 0.0000216 | ||
| V | 88267 | 0.0313230 | ||
| X | 523 | 0.0001856 | ||
| G | 339 | - | 1 | 0.0000004 |
| A | 30 | 0.0000106 | ||
| C | 11 | 0.0000039 | ||
| D | 2100377 | 0.7453529 | ||
| E | 14 | 0.0000050 | ||
| H | 8 | 0.0000028 | ||
| K | 9 | 0.0000032 | ||
| N | 403 | 0.0001430 | ||
| P | 1 | 0.0000004 | ||
| S | 115 | 0.0000408 | ||
| T | 1 | 0.0000004 | ||
| V | 32 | 0.0000114 | ||
| X | 1256 | 0.0004457 | ||
| Y | 34 | 0.0000121 | ||
| R | 346 | - | 11 | 0.0000039 |
| A | 1 | 0.0000004 | ||
| E | 8 | 0.0000028 | ||
| G | 132 | 0.0000468 | ||
| I | 239 | 0.0000848 | ||
| K | 641072 | 0.2274948 | ||
| N | 3 | 0.0000011 | ||
| Q | 1 | 0.0000004 | ||
| S | 382 | 0.0001356 | ||
| T | 999 | 0.0003545 | ||
| V | 1 | 0.0000004 | ||
| X | 4578 | 0.0016246 | ||
| S | 371 | # | 4 | 0.0000014 |
| - | 2 | 0.0000007 | ||
| A | 8 | 0.0000028 | ||
| F | 967560 | 0.3433544 | ||
| H | 1 | 0.0000004 | ||
| I | 46 | 0.0000163 | ||
| L | 1109598 | 0.3937589 | ||
| N | 1 | 0.0000004 | ||
| P | 181 | 0.0000642 | ||
| R | 1 | 0.0000004 | ||
| T | 4 | 0.0000014 | ||
| X | 19383 | 0.0068784 | ||
| Y | 326 | 0.0001157 | ||
| S | 373 | # | 1 | 0.0000004 |
| - | 1 | 0.0000004 | ||
| A | 7 | 0.0000025 | ||
| L | 153 | 0.0000543 | ||
| P | 2096891 | 0.7441159 | ||
| Q | 5 | 0.0000018 | ||
| T | 2 | 0.0000007 | ||
| X | 1678 | 0.0005955 | ||
| S | 375 | # | 2 | 0.0000007 |
| - | 9 | 0.0000032 | ||
| A | 31 | 0.0000110 | ||
| C | 3 | 0.0000011 | ||
| F | 2095461 | 0.7436084 | ||
| I | 1 | 0.0000004 | ||
| L | 2 | 0.0000007 | ||
| N | 1 | 0.0000004 | ||
| P | 7 | 0.0000025 | ||
| V | 3 | 0.0000011 | ||
| X | 2442 | 0.0008666 | ||
| Y | 18 | 0.0000064 | ||
| T | 376 | # | 2 | 0.0000007 |
| - | 5 | 0.0000018 | ||
| A | 978518 | 0.3472430 | ||
| I | 501 | 0.0001778 | ||
| K | 2 | 0.0000007 | ||
| N | 28 | 0.0000099 | ||
| S | 61 | 0.0000216 | ||
| V | 5 | 0.0000018 | ||
| X | 2526 | 0.0008964 | ||
| D | 405 | # | 1 | 0.0000004 |
| - | 2 | 0.0000007 | ||
| A | 3 | 0.0000011 | ||
| E | 4 | 0.0000014 | ||
| G | 17 | 0.0000060 | ||
| H | 7 | 0.0000025 | ||
| N | 980885 | 0.3480830 | ||
| S | 3 | 0.0000011 | ||
| V | 1 | 0.0000004 | ||
| X | 2067 | 0.0007335 | ||
| Y | 11 | 0.0000039 | ||
| R | 408 | G | 9 | 0.0000032 |
| I | 100 | 0.0000355 | ||
| K | 11 | 0.0000039 | ||
| N | 1 | 0.0000004 | ||
| S | 958582 | 0.3401684 | ||
| T | 8 | 0.0000028 | ||
| X | 16715 | 0.0059316 | ||
| K | 417 | # | 3 | 0.0000011 |
| E | 5 | 0.0000018 | ||
| H | 27 | 0.0000096 | ||
| I | 213 | 0.0000756 | ||
| M | 2 | 0.0000007 | ||
| N | 2008225 | 0.7126513 | ||
| Q | 1 | 0.0000004 | ||
| R | 17 | 0.0000060 | ||
| S | 11 | 0.0000039 | ||
| T | 4561 | 0.0016185 | ||
| X | 30092 | 0.0106786 | ||
| Y | 5 | 0.0000018 | ||
| N | 440 | # | 2 | 0.0000007 |
| - | 1 | 0.0000004 | ||
| D | 8 | 0.0000028 | ||
| H | 1 | 0.0000004 | ||
| I | 25 | 0.0000089 | ||
| K | 1994922 | 0.7079305 | ||
| R | 12 | 0.0000043 | ||
| S | 2 | 0.0000007 | ||
| T | 9 | 0.0000032 | ||
| X | 44193 | 0.0156826 | ||
| Y | 61 | 0.0000216 | ||
| G | 446 | - | 3 | 0.0000011 |
| A | 9 | 0.0000032 | ||
| D | 72 | 0.0000256 | ||
| F | 1 | 0.0000004 | ||
| I | 20 | 0.0000071 | ||
| N | 125 | 0.0000444 | ||
| R | 245 | 0.0000869 | ||
| S | 1084380 | 0.3848099 | ||
| T | 19 | 0.0000067 | ||
| V | 2538 | 0.0009007 | ||
| X | 4166 | 0.0014784 | ||
| L | 452 | # | 1 | 0.0000004 |
| - | 1 | 0.0000004 | ||
| M | 2222 | 0.0007885 | ||
| P | 2 | 0.0000007 | ||
| Q | 23997 | 0.0085157 | ||
| R | 716915 | 0.2544089 | ||
| W | 49 | 0.0000174 | ||
| X | 1963 | 0.0006966 | ||
| S | 477 | - | 1 | 0.0000004 |
| D | 61 | 0.0000216 | ||
| G | 97 | 0.0000344 | ||
| I | 1345 | 0.0004773 | ||
| K | 49 | 0.0000174 | ||
| N | 2095753 | 0.7437120 | ||
| R | 62 | 0.0000220 | ||
| T | 24 | 0.0000085 | ||
| X | 1647 | 0.0005845 | ||
| T | 478 | # | 2 | 0.0000007 |
| $ | 1 | 0.0000004 | ||
| - | 1 | 0.0000004 | ||
| E | 102 | 0.0000362 | ||
| G | 1 | 0.0000004 | ||
| I | 10 | 0.0000035 | ||
| K | 2807284 | 0.9962104 | ||
| N | 11 | 0.0000039 | ||
| Q | 14 | 0.0000050 | ||
| R | 209 | 0.0000742 | ||
| X | 812 | 0.0002882 | ||
| E | 484 | - | 2 | 0.0000007 |
| A | 2093857 | 0.7430392 | ||
| D | 56 | 0.0000199 | ||
| G | 57 | 0.0000202 | ||
| H | 1 | 0.0000004 | ||
| K | 655 | 0.0002324 | ||
| P | 123 | 0.0000436 | ||
| Q | 4177 | 0.0014823 | ||
| R | 6 | 0.0000021 | ||
| S | 123 | 0.0000436 | ||
| T | 99 | 0.0000351 | ||
| V | 1086 | 0.0003854 | ||
| X | 1642 | 0.0005827 | ||
| Q | 493 | # | 3 | 0.0000011 |
| - | 1 | 0.0000004 | ||
| E | 18 | 0.0000064 | ||
| G | 2 | 0.0000007 | ||
| H | 45 | 0.0000160 | ||
| K | 15 | 0.0000053 | ||
| L | 55 | 0.0000195 | ||
| P | 3 | 0.0000011 | ||
| R | 2091564 | 0.7422255 | ||
| V | 1 | 0.0000004 | ||
| X | 1789 | 0.0006349 | ||
| G | 496 | - | 3 | 0.0000011 |
| C | 2 | 0.0000007 | ||
| D | 1 | 0.0000004 | ||
| I | 4 | 0.0000014 | ||
| N | 159 | 0.0000564 | ||
| S | 1112656 | 0.3948441 | ||
| T | 29 | 0.0000103 | ||
| V | 7 | 0.0000025 | ||
| X | 2002 | 0.0007104 | ||
| Q | 498 | # | 2 | 0.0000007 |
| $ | 2 | 0.0000007 | ||
| - | 8 | 0.0000028 | ||
| D | 2 | 0.0000007 | ||
| H | 3 | 0.0000011 | ||
| I | 1 | 0.0000004 | ||
| K | 1 | 0.0000004 | ||
| L | 6 | 0.0000021 | ||
| P | 1 | 0.0000004 | ||
| R | 2091214 | 0.7421013 | ||
| S | 1 | 0.0000004 | ||
| X | 3837 | 0.0013616 | ||
| Y | 11 | 0.0000039 | ||
| N | 501 | # | 2 | 0.0000007 |
| $ | 1 | 0.0000004 | ||
| - | 17 | 0.0000060 | ||
| C | 4 | 0.0000014 | ||
| D | 1 | 0.0000004 | ||
| F | 7 | 0.0000025 | ||
| G | 1 | 0.0000004 | ||
| H | 4 | 0.0000014 | ||
| I | 29 | 0.0000103 | ||
| K | 5 | 0.0000018 | ||
| L | 1 | 0.0000004 | ||
| M | 1 | 0.0000004 | ||
| Q | 4 | 0.0000014 | ||
| R | 1 | 0.0000004 | ||
| S | 236 | 0.0000837 | ||
| T | 311 | 0.0001104 | ||
| W | 1 | 0.0000004 | ||
| X | 912 | 0.0003236 | ||
| Y | 2094967 | 0.7434331 | ||
| Y | 505 | # | 4 | 0.0000014 |
| - | 22 | 0.0000078 | ||
| F | 2 | 0.0000007 | ||
| H | 2092970 | 0.7427244 | ||
| X | 1183 | 0.0004198 | ||
| T | 547 | # | 1 | 0.0000004 |
| A | 29 | 0.0000103 | ||
| E | 1 | 0.0000004 | ||
| I | 1088 | 0.0003861 | ||
| K | 1120813 | 0.3977387 | ||
| R | 14 | 0.0000050 | ||
| S | 2 | 0.0000007 | ||
| X | 1374 | 0.0004876 | ||
| Q | 613 | $ | 1 | 0.0000004 |
| - | 1 | 0.0000004 | ||
| E | 707 | 0.0002509 | ||
| H | 10542 | 0.0037410 | ||
| K | 6 | 0.0000021 | ||
| L | 4 | 0.0000014 | ||
| P | 1 | 0.0000004 | ||
| R | 21 | 0.0000075 | ||
| X | 90 | 0.0000319 | ||
| H | 655 | # | 1 | 0.0000004 |
| F | 48 | 0.0000170 | ||
| L | 6 | 0.0000021 | ||
| N | 1 | 0.0000004 | ||
| P | 1 | 0.0000004 | ||
| Q | 1 | 0.0000004 | ||
| R | 40 | 0.0000142 | ||
| X | 689 | 0.0002445 | ||
| Y | 2105225 | 0.7470733 | ||
| Q | 677 | $ | 2 | 0.0000007 |
| - | 20 | 0.0000071 | ||
| E | 1149 | 0.0004077 | ||
| G | 1 | 0.0000004 | ||
| H | 9471 | 0.0033609 | ||
| K | 29 | 0.0000103 | ||
| L | 61 | 0.0000216 | ||
| P | 36 | 0.0000128 | ||
| R | 78 | 0.0000277 | ||
| X | 125 | 0.0000444 | ||
| Y | 4 | 0.0000014 | ||
| N | 679 | - | 14 | 0.0000050 |
| D | 4 | 0.0000014 | ||
| H | 2 | 0.0000007 | ||
| I | 174 | 0.0000617 | ||
| K | 2103938 | 0.7466166 | ||
| M | 7 | 0.0000025 | ||
| Q | 4 | 0.0000014 | ||
| R | 26 | 0.0000092 | ||
| S | 107 | 0.0000380 | ||
| T | 198 | 0.0000703 | ||
| V | 1 | 0.0000004 | ||
| X | 928 | 0.0003293 | ||
| Y | 80 | 0.0000284 | ||
| P | 681 | # | 2 | 0.0000007 |
| - | 5 | 0.0000018 | ||
| C | 3 | 0.0000011 | ||
| G | 1 | 0.0000004 | ||
| H | 2097306 | 0.7442631 | ||
| L | 63 | 0.0000224 | ||
| N | 18 | 0.0000064 | ||
| Q | 4 | 0.0000014 | ||
| R | 709935 | 0.2519320 | ||
| S | 3 | 0.0000011 | ||
| X | 2501 | 0.0008875 | ||
| Y | 325 | 0.0001153 | ||
| A | 701 | E | 24 | 0.0000085 |
| G | 1 | 0.0000004 | ||
| P | 28 | 0.0000099 | ||
| S | 458 | 0.0001625 | ||
| T | 83 | 0.0000295 | ||
| V | 87320 | 0.0309869 | ||
| X | 1026 | 0.0003641 | ||
| S | 704 | # | 2 | 0.0000007 |
| $ | 1 | 0.0000004 | ||
| A | 34 | 0.0000121 | ||
| L | 30403 | 0.0107890 | ||
| P | 207 | 0.0000735 | ||
| T | 8 | 0.0000028 | ||
| X | 265 | 0.0000940 | ||
| Y | 1 | 0.0000004 | ||
| N | 764 | D | 1 | 0.0000004 |
| E | 21 | 0.0000075 | ||
| F | 1 | 0.0000004 | ||
| H | 3 | 0.0000011 | ||
| I | 9 | 0.0000032 | ||
| K | 2080464 | 0.7382865 | ||
| Q | 4 | 0.0000014 | ||
| R | 19 | 0.0000067 | ||
| S | 1 | 0.0000004 | ||
| T | 1 | 0.0000004 | ||
| X | 12503 | 0.0044369 | ||
| Y | 6 | 0.0000021 | ||
| D | 796 | - | 1 | 0.0000004 |
| A | 3 | 0.0000011 | ||
| C | 5 | 0.0000018 | ||
| F | 3 | 0.0000011 | ||
| G | 127 | 0.0000451 | ||
| H | 342 | 0.0001214 | ||
| I | 2 | 0.0000007 | ||
| N | 48 | 0.0000170 | ||
| V | 4 | 0.0000014 | ||
| X | 2545 | 0.0009031 | ||
| Y | 2100725 | 0.7454764 | ||
| I | 850 | - | 1 | 0.0000004 |
| F | 16 | 0.0000057 | ||
| L | 10969 | 0.0038925 | ||
| M | 5 | 0.0000018 | ||
| N | 3 | 0.0000011 | ||
| S | 6 | 0.0000021 | ||
| T | 49 | 0.0000174 | ||
| V | 122 | 0.0000433 | ||
| X | 125 | 0.0000444 | ||
| N | 856 | # | 4 | 0.0000014 |
| $ | 3 | 0.0000011 | ||
| - | 1 | 0.0000004 | ||
| G | 1 | 0.0000004 | ||
| I | 1 | 0.0000004 | ||
| K | 1119803 | 0.3973803 | ||
| L | 1 | 0.0000004 | ||
| R | 2 | 0.0000007 | ||
| S | 81 | 0.0000287 | ||
| X | 2109 | 0.0007484 | ||
| Y | 1 | 0.0000004 | ||
| D | 950 | # | 4 | 0.0000014 |
| - | 1 | 0.0000004 | ||
| A | 4 | 0.0000014 | ||
| E | 1 | 0.0000004 | ||
| G | 13 | 0.0000046 | ||
| H | 91 | 0.0000323 | ||
| I | 1 | 0.0000004 | ||
| N | 687806 | 0.2440791 | ||
| S | 22 | 0.0000078 | ||
| T | 16 | 0.0000057 | ||
| V | 1 | 0.0000004 | ||
| X | 19003 | 0.0067435 | ||
| Y | 12 | 0.0000043 | ||
| Q | 954 | D | 1 | 0.0000004 |
| H | 2103874 | 0.7465939 | ||
| K | 14 | 0.0000050 | ||
| L | 37 | 0.0000131 | ||
| N | 8 | 0.0000028 | ||
| R | 8 | 0.0000028 | ||
| X | 1106 | 0.0003925 | ||
| Y | 156 | 0.0000554 | ||
| N | 969 | # | 5 | 0.0000018 |
| - | 2 | 0.0000007 | ||
| K | 2104149 | 0.7466915 | ||
| R | 15 | 0.0000053 | ||
| S | 5 | 0.0000018 | ||
| T | 4 | 0.0000014 | ||
| X | 878 | 0.0003116 | ||
| L | 981 | # | 2 | 0.0000007 |
| - | 1 | 0.0000004 | ||
| F | 1119520 | 0.3972799 | ||
| I | 79 | 0.0000280 | ||
| P | 1 | 0.0000004 | ||
| S | 37 | 0.0000131 | ||
| V | 1 | 0.0000004 | ||
| X | 1779 | 0.0006313 | ||
| I | 1081 | F | 31 | 0.0000110 |
| L | 22 | 0.0000078 | ||
| M | 2 | 0.0000007 | ||
| T | 9 | 0.0000032 | ||
| V | 16716 | 0.0059319 | ||
| X | 228 | 0.0000809 | ||
| V | 1104 | $ | 1 | 0.0000004 |
| A | 21 | 0.0000075 | ||
| I | 106 | 0.0000376 | ||
| L | 10537 | 0.0037392 | ||
| X | 142 | 0.0000504 | ||
| P | 1162 | # | 1 | 0.0000004 |
| - | 2 | 0.0000007 | ||
| A | 225 | 0.0000798 | ||
| L | 5201 | 0.0018457 | ||
| Q | 89 | 0.0000316 | ||
| R | 132 | 0.0000468 | ||
| S | 4524 | 0.0016054 | ||
| T | 47 | 0.0000167 | ||
| X | 278 | 0.0000987 | ||
| V | 1264 | # | 2 | 0.0000007 |
| - | 1 | 0.0000004 | ||
| A | 209 | 0.0000742 | ||
| E | 6 | 0.0000021 | ||
| F | 25 | 0.0000089 | ||
| G | 10 | 0.0000035 | ||
| I | 6 | 0.0000021 | ||
| L | 25362 | 0.0090001 | ||
| M | 1629 | 0.0005781 | ||
| X | 275 | 0.0000976 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | codon | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|---|---|
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Australia_New-South-Wales_Sydney | 2 | 8589 | 8589 | 39384 | Oceania 47974 |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Australia_Queensland | 3 | 9572 | 39384 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_Queensland | 11 | 9572 | 39384 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Belgium_Beveren | 1 | 19 | 20763 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Belgium_Ghent | 1 | 1091 | 20763 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,R346X,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Czech-Republic_Prague_Praha | 1 | 177 | 1159 | 5855 | Europe 1758058 |
| L | 5 | # | CTT | -TT | T19R,T95X,Y144X,E156G,F157-,R158-,L452R,T478K,P681R,N856X,D950N,D614G | Ecuador_Pichincha_Quito | 1 | 19 | 116 | 512 | South-America 33683 |
| L | 5 | # | CTT | -TT | L18F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | France_Normandie | 1 | 1788 | 74553 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | France_Normandie | 3 | 1788 | 74553 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Indonesia_Banten | 1 | 491 | 8623 | Asia 165567 | |
| L | 5 | # | CTT | --T | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Kosovo_Peje | 1 | 14 | 122 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Lebanon_Nabatieh_Bint-Jbeil | 1 | 1 | 4 | 53 | Asia 165567 |
| L | 5 | # | CTT | --T | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Montenegro_Bar | 1 | 19 | 232 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | New-Zealand_Auckland | 1 | 801 | 5174 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,A701V,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | New-Zealand_Canterbury | 1 | 733 | 5174 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | New-Zealand_Canterbury | 4 | 733 | 5174 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | New-Zealand_Counties-Manukau | 2 | 817 | 5174 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | New-Zealand_Nelson-Marlborough | 1 | 71 | 5174 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | New-Zealand_Waitemata | 5 | 383 | 5174 | Oceania 47974 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Switzerland_Bern | 3 | 4530 | 27553 | Europe 1758058 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_California_Butte | 2 | 169 | 96670 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California_Contra-Costa | 1 | 1109 | 96670 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_California_Fresno | 1 | 625 | 96670 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_California_Sacramento | 1 | 1157 | 96670 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_California_San-Mateo | 1 | 292 | 96670 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Colorado | 4 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Colorado | 1 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Colorado | 1 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Colorado | 3 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Colorado | 4 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Colorado | 5 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,Y144-,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Colorado | 1 | 39052 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | --T | A67V,H69-,V70#,T95I,G142T,V143-,Y144-,Y145T,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | --T | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho | 8 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho | 7 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | --T | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | --T | A67V,H69-,V70-,T95I,V143P,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho | 3 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Idaho | 4 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,G181V,L452R,T478K,P681R,D950N,V1104L,D614G | USA_Idaho | 1 | 4457 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | --T | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho_Ada | 1 | 237 | 4457 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho_Ada | 1 | 237 | 4457 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Idaho_Fremont | 1 | 3 | 4457 | 688156 | North-America 798475 |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Nevada | 3 | 6132 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | USA_Nevada | 1 | 6132 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Nevada | 1 | 6132 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Nevada | 2 | 6132 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-Jersey | 1 | 18855 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Wyoming | 1 | 2928 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_Wyoming | 1 | 2928 | 688156 | North-America 798475 | |
| L | 5 | # | CTT | -TT | T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N,D614G | United-Kingdom_England_PHEC | 1 | 36783 | 710473 | 938050 | Europe 1758058 |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Aruba_Aruba | 1 | 284 | 284 | South-America 33683 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Bonaire_Bonaire | 1 | 667 | 667 | South-America 33683 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Curacao_Curacao | 1 | 651 | 651 | South-America 33683 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Curacao_Curacao | 2 | 651 | 651 | South-America 33683 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Flevoland | 1 | 582 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Flevoland | 2 | 582 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Friesland | 1 | 1398 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N,D614G | Netherlands_Friesland | 2 | 1398 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Friesland | 2 | 1398 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L18F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Gelderland | 1 | 4449 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446N,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Gelderland | 1 | 4449 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Gelderland | 1 | 4449 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 3 | 4449 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N,D614G | Netherlands_Gelderland | 2 | 4449 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Limburg | 1 | 2730 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Noord-Brabant | 1 | 3702 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Noord-Brabant | 1 | 3702 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Noord-Brabant | 1 | 3702 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Noord-Holland | 1 | 5906 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 3 | 5906 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Noord-Holland | 2 | 5906 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Overijssel | 2 | 1466 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Overijssel | 2 | 1466 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,I850L,D950N,D614G | Netherlands_Overijssel | 1 | 1466 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Utrecht | 1 | 3926 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Utrecht | 2 | 3926 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,P1162S,D614G | Netherlands_Utrecht | 1 | 3926 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Zuid-Holland | 1 | 5452 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Netherlands_Zuid-Holland | 1 | 5452 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | L5-,T19I,L24-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Zuid-Holland | 2 | 5452 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Zuid-Holland | 2 | 5452 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Netherlands_Zuid-Holland | 1 | 5452 | 31388 | Europe 1758058 | |
| L | 5 | - | CTT | --- | T19I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Turkey | 1 | 15251 | Europe 1758058 | ||
| L | 5 | - | CTT | --- | T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | USA_California_Los-Angeles | 1 | 4385 | 96670 | 688156 | North-America 798475 |
| L | 5 | F | CTT | TTT | L5F,T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Algeria_Algiers | 1 | 18 | 33 | Africa 14206 | |
| L | 5 | F | CTT | TTT | T19R,A67X,H69X,V70X,T95I,G142X,V143X,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Argentina | 1 | 2200 | South-America 33683 | ||
| L | 5 | F | CTT | TTT | T19R,G142X,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Argentina | 1 | 2200 | South-America 33683 | ||
| L | 5 | F | CTT | TTT | T95I,E484K,A701V,D614G | Argentina_Alberti | 1 | 1 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | L5F,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,R346K,S371L,S373P,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F,D614G | Argentina_Buenos-Aires | 1 | 879 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | T19R,A67V,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N,D614G | Argentina_Buenos-Aires | 1 | 879 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | T19R,A67V,G142X,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N,D614G | Argentina_Buenos-Aires | 3 | 879 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | T19R,G142D,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Argentina_Buenos-Aires | 6 | 879 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | T19R,G142X,E156G,F157-,R158-,L452R,T478K,P681R,D950N,D614G | Argentina_Buenos-Aires | 24 | 879 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | T19R,G142X,E156G,F157-,R158-,L452R,T478K,P681R,D950N,V1264L,D614G | Argentina_Buenos-Aires | 1 | 879 | 2200 | South-America 33683 | |
| L | 5 | F | CTT | TTT | T19R,G142X,E156G,F157-,R158-,L452R,T478K,P681R,D950X,V1264L,D614G | Argentina_Buenos-Aires | 1 | 879 | 2200 | South-America 33683 |
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last modified: Thu Apr 21 17:06 2022
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