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Tables of mutating sites in Spike, updated daily

Last update: May 28, 2023

Dates of current data


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Collection dates: 2023-02-27 - 2023-05-27

Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)

Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.

# of seqs: 284,425

oriposmutcountfrequency
L5-100.0000352
F31900.0112156
H20.0000070
I60.0000211
X77230.0271530
T19-370.0001301
A10.0000035
G10.0000035
I2729460.9596414
L4290.0015083
M20.0000070
R2550.0008965
V840.0002953
X85550.0300782
L24-2701650.9498638
F30.0000105
S2810.0009880
T40.0000141
V20.0000070
X114360.0402074
P25-2706280.9514916
D10.0000035
F110.0000387
H570.0002004
S11490.0040397
T80.0000281
X116750.0410477
Y140.0000492
P26-2715920.9548809
H10.0000035
L10.0000035
S20.0000070
T70.0000246
X107670.0378553
A27-15080.0053019
R10.0000035
S2702460.9501485
X105480.0370853
T51-430.0001512
A30.0000105
I9200.0032346
N70.0000246
P10.0000035
S10.0000035
X97440.0342586
Q52-600.0002110
E80.0000281
H6720.0023627
K140.0000492
L70.0000246
R1500.0005274
V10.0000035
X108000.0379713
H69-278910.0980610
A10.0000035
D20.0000070
E10.0000035
F740.0002602
L230.0000809
N20.0000070
P10.0000035
Q10.0000035
R30.0000105
S160.0000563
T10.0000035
X90310.0317518
Y2550.0008965
V70-280850.0987431
A720.0002531
F1640.0005766
G90.0000316
I380.0001336
L190.0000668
W10.0000035
X89440.0314459
V83-760.0002672
A2153440.7571205
D30.0000105
F1520.0005344
I60.0000211
K10.0000035
L40.0000141
P600.0002110
S820.0002883
T120.0000422
X116610.0409985
G142-4130.0014521
A90.0000316
D2706580.9515971
E40.0000141
H10.0000035
K10.0000035
N50.0000176
Q50.0000176
X101770.0357810
Y160.0000563
Y144-2098380.7377622
C30.0000105
D20.0000070
F380.0001336
H20.0000070
K310.0001090
L20.0000070
N40.0000141
Q1310.0004606
S30.0000105
X206900.0727433
Y145-5220.0018353
C40.0000141
D60.0000211
H1620.0005696
I10.0000035
K1690.0005942
L750.0002637
N150.0000527
P1100.0003867
Q2810.0009880
R120.0000422
S20.0000070
X128590.0452105
H146-53680.0188732
C10.0000035
E240.0000844
I10.0000035
K105410.0370607
L850.0002988
N570.0002004
P50.0000176
Q2034340.7152466
R80.0000281
V20.0000070
X76460.0268823
Y360.0001266
K147-1520.0005344
D60.0000211
E264360.0929454
I11440.0040221
N3200.0011251
Q1520.0005344
R20.0000070
T30.0000105
V10.0000035
X61100.0214819
Y20.0000070
W152-210.0000738
C10.0000035
G60.0000211
L3880.0013642
Q420.0001477
R261830.0920559
S20.0000070
X63890.0224629
M153-240.0000844
G10.0000035
I8860.0031151
K30.0000105
R10.0000035
T4400.0015470
V1510.0005309
X64120.0225437
E156-220.0000773
A210.0000738
D120.0000422
G13340.0046902
K110.0000387
Q1550.0005450
V420.0001477
X66340.0233243
F157-13450.0047288
A10.0000035
C10.0000035
L278820.0980294
S2200.0007735
V20.0000070
W10.0000035
X72110.0253529
Y40.0000141
R158-13480.0047394
E10.0000035
G260.0000914
I10.0000035
K50.0000176
L10.0000035
S430.0001512
T70.0000246
X72280.0254127
L176-140.0000492
F14910.0052422
H20.0000070
I120.0000422
P110.0000387
X115300.0405379
E180-160.0000563
A50.0000176
D130.0000457
G240.0000844
K430.0001512
L20.0000070
Q950.0003340
V156880.0551569
X114520.0402637
K182-1110.0003903
E4750.0016700
I1410.0004957
N8880.0031221
Q70.0000246
R1290.0004535
T360.0001266
X93030.0327081
Q183-180.0000633
A20.0000070
D450.0001582
E2177160.7654601
G70.0000246
H430.0001512
K350.0001231
L230.0000809
P220.0000773
R860.0003024
V70.0000246
X105240.0370010
G184-200.0000703
A10.0000035
D1330.0004676
E10.0000035
S3180.0011180
V16810.0059102
X92590.0325534
N185-130.0000457
A10.0000035
D53850.0189329
H120.0000422
I1140.0004008
K100.0000352
S1140.0004008
T570.0002004
X90570.0318432
Y410.0001442
F186-1200.0004219
C20.0000070
I30.0000105
L5320.0018704
S2050.0007208
V130.0000457
X90380.0317764
Y170.0000598
Y200-150.0000527
C12180.0042823
H170.0000598
S10.0000035
V20.0000070
W20.0000070
X74510.0261967
P209-150.0000527
H50.0000176
L12410.0043632
R20.0000070
S280.0000984
T30.0000105
X71510.0251420
I210-960.0003375
A320.0001125
F150.0000527
S40.0000141
T640.0002250
V251160.0883045
X72630.0255357
L212-3260.0011462
E310.0001090
F50.0000176
G680.0002391
I510.0001793
S12200.0042894
X73010.0256693
V213-4190.0014731
A40.0000141
D810.0002848
E2204720.7751499
G532370.1871741
I20.0000070
K20.0000070
N20.0000070
Q50.0000176
R160.0000563
T10.0000035
W60.0000211
X77560.0272691
D215-190.0000668
A80.0000281
E60.0000211
G14130.0049679
H26510.0093206
N370.0001301
S40.0000141
V1120.0003938
X69660.0244915
Y1670.0005871
A222-190.0000668
F20.0000070
I10.0000035
K10.0000035
P30.0000105
S1320.0004641
T270.0000949
V13460.0047324
X66670.0234403
A243-11140.0039167
D10.0000035
G10.0000035
S210.0000738
T10.0000035
V150.0000527
X511720.1799139
Y10.0000035
L244-11810.0041522
F300.0001055
N10.0000035
S70.0000246
V20.0000070
X506510.1780821
H245-580.0002039
D40.0000141
N6520.0022923
P10.0000035
Q60.0000211
R360.0001266
X504160.1772559
Y5400.0018986
Y248-3600.0012657
C10.0000035
D8990.0031608
F20.0000070
G20.0000070
H2540.0008930
I10.0000035
L10.0000035
N370.0001301
S3670.0012903
X503290.1769500
G252-370.0001301
A80.0000281
D360.0001266
I510.0001793
S220.0000773
V1685100.5924585
X522010.1835317
D253-1380.0004852
A180.0000633
E180.0000633
G67900.0238727
I10.0000035
N100.0000352
S50.0000176
V180.0000633
X520310.1829340
Y410.0001442
S256-410.0001442
A80.0000281
L15910.0055937
P1000.0003516
T20.0000070
X531600.1869034
G257-3290.0011567
C20.0000070
D10280.0036143
H10.0000035
R120.0000422
S260460.0915742
T10.0000035
V260.0000914
X532740.1873042
Y10.0000035
T323-470.0001652
A580.0002039
G10.0000035
I22150.0077876
K420.0001477
R840.0002953
S10.0000035
X158690.0557933
G339-380.0001336
D285310.1003112
H2415000.8490815
K10.0000035
L40.0000141
N420.0001477
P30.0000105
Q70.0000246
R330.0001160
V60.0000211
X124820.0438850
Y820.0002883
R346-3030.0010653
A170.0000598
G20.0000070
I1860.0006540
K860.0003024
N20.0000070
S7130.0025068
T2590030.9106197
W10.0000035
X137290.0482693
A348-510.0001793
E10.0000035
L20.0000070
N10.0000035
P100.0000352
Q20.0000070
R10.0000035
S2610.0009176
T5010.0017614
V820.0002883
X132800.0466907
K356-250.0000879
E150.0000527
F10.0000035
M20.0000070
N650.0002285
R90.0000316
T82700.0290762
X161310.0567144
L368-250.0000879
I2095310.7366828
M50.0000176
P10.0000035
T10.0000035
V250.0000879
X185010.0650470
S371-280.0000984
F2640590.9283959
G10.0000035
L550.0001934
X194020.0682148
S373-300.0001055
A10.0000035
C10.0000035
F230.0000809
L20.0000070
P2645140.9299956
Q30.0000105
T40.0000141
X192110.0675433
S375-690.0002426
A850.0002988
C20.0000070
F2629260.9244124
L10.0000035
X198000.0696141
Y40.0000141
T376-2240.0007876
A2628110.9240081
D10.0000035
E10.0000035
I10.0000035
L30.0000105
N10.0000035
P20.0000070
V80.0000281
X202580.0712244
D405-590.0002074
N2666770.9376004
S40.0000141
X169260.0595095
Y30.0000105
R408-490.0001723
A10.0000035
C10.0000035
F10.0000035
G960.0003375
I120.0000422
N760.0002672
S2530450.8896721
T10.0000035
X242570.0852843
I410-470.0001652
D10.0000035
L20.0000070
V12740.0044792
X276870.0973438
K417-490.0001723
A20.0000070
D70.0000246
H10.0000035
I70.0000246
L20.0000070
N2484670.8735765
S290.0001020
T220.0000773
V10.0000035
X309250.1087281
N440-450.0001582
E30.0000105
K2634820.9263672
P20.0000070
R620.0002180
V10.0000035
X196100.0689461
K444-560.0001969
C10.0000035
E20.0000070
F10.0000035
M1410.0004957
N5040.0017720
Q20.0000070
R5980.0021025
S10.0000035
T314010.1104017
X177750.0624945
V445-530.0001863
A6400.0022502
F280.0000984
G10.0000035
H70.0000246
I20.0000070
L680.0002391
P2081250.7317395
S3310.0011638
T40.0000141
X196940.0692415
G446-420.0001477
A10.0000035
D3900.0013712
F10.0000035
I840.0002953
N440.0001547
R990.0003481
S2363630.8310205
T200.0000703
V290.0001020
X192530.0676910
L452-430.0001512
K10.0000035
M9030.0031748
Q450.0001582
R427650.1503560
S10.0000035
V30.0000105
W30.0000105
X163520.0574914
Y453-460.0001617
F3170.0011145
H170.0000598
S10.0000035
X168040.0590806
F456-450.0001582
L33750.0118660
V20.0000070
X170590.0599771
N460-510.0001793
H20.0000070
I50.0000176
K2550820.8968340
M110.0000387
Q10.0000035
R70.0000246
S130.0000457
T10.0000035
X175850.0618265
Y50.0000176
S477-1310.0004606
D80.0000281
K160.0000563
N2684780.9439325
X130020.0457133
Y10.0000035
T478-1190.0004184
E650.0002285
G10.0000035
I1860.0006540
K2504370.8805028
N3480.0012235
Q2270.0007981
R179730.0631906
X132260.0465008
E484-1340.0004711
A2684710.9439079
K50.0000176
P110.0000387
R4190.0014731
S420.0001477
T410.0001442
V1260.0004430
X136700.0480619
F486-1280.0004500
A1870.0006575
E10.0000035
H30.0000105
I5190.0018247
L3040.0010688
P2149950.7558935
Q10.0000035
S166460.0585251
V275050.0967039
X137580.0483713
Y10.0000035
F490-1220.0004289
A60.0000211
H10.0000035
I10.0000035
L40.0000141
P5120.0018001
S2260090.7946172
T20.0000070
V70.0000246
X119740.0420990
Y150.0000527
Q493-1140.0004008
E90.0000316
H40.0000141
K100.0000352
L1980.0006961
R780.0002742
T10.0000035
X107650.0378483
Y20.0000070
S494-1280.0004500
A10.0000035
L50.0000176
P10720.0037690
T20.0000070
X107200.0376901
Q498-1300.0004571
E10.0000035
H20.0000070
L260.0000914
R2713480.9540230
X121740.0428021
N501-1500.0005274
F10.0000035
H10.0000035
L10.0000035
X120550.0423838
Y2716900.9552255
Y505-1390.0004887
H2693250.9469104
N10.0000035
Q10.0000035
R10.0000035
X138160.0485752
P521-1550.0005450
A30.0000105
F10.0000035
I10.0000035
L120.0000422
Q450.0001582
R70.0000246
S74810.0263022
T5450.0019161
X122930.0432205
T547-60.0000211
A40.0000141
I44280.0155683
K4520.0015892
R50.0000176
S40.0000141
X26190.0092081
E554-110.0000387
A490.0001723
D480.0001688
G690.0002426
K9930.0034913
Q1130.0003973
V530.0001863
X21050.0074009
T573A10.0000035
I24890.0087510
X8550.0030061
E583A90.0000316
D6340.0022291
G40.0000141
K330.0001160
Q1910.0006715
V80.0000281
X20380.0071653
Q613-10.0000035
E80.0000281
H111520.0392089
L30.0000105
N10.0000035
R20.0000070
X19780.0069544
Y10.0000035
P621-30.0000105
A770.0002707
H540.0001899
L360.0001266
R120.0000422
S19380.0068137
T80.0000281
X19880.0069895
H655-10.0000035
D10.0000035
F80.0000281
X25890.0091026
Y2815970.9900571
I666L20.0000070
N10.0000035
V10960.0038534
X25540.0089795
Q675E20.0000070
H10730.0037725
K2750.0009669
L520.0001828
P20.0000070
R280.0000984
X23060.0081076
N679-30.0000105
K2813940.9893434
M10.0000035
Q10.0000035
R1020.0003586
X24870.0087440
P681-20.0000070
D10.0000035
H2810920.9882816
L50.0000176
N20.0000070
R1730.0006082
X26160.0091975
Y580.0002039
A701-70.0000246
E40.0000141
G10.0000035
P10.0000035
S470.0001652
T360.0001266
V10790.0037936
X71800.0252439
N703-100.0000352
D60.0000211
H20.0000070
I11090.0038991
K270.0000949
S3800.0013360
T20.0000070
W10.0000035
X73030.0256764
Y560.0001969
S704-20.0000070
A80.0000281
L8430.0029639
P50.0000176
T410.0001442
X72630.0255357
N764-20.0000070
K2762440.9712367
Q30.0000105
R90.0000316
T10.0000035
X75580.0265729
D796-40.0000141
C50.0000176
F60.0000211
H1960.0006891
X62700.0220445
Y2774520.9754839
L858-120.0000422
I13400.0047113
P10.0000035
V10.0000035
X38460.0135220
T883-10.0000035
I32900.0115672
S50.0000176
X34870.0122598
Q954-10.0000035
D60.0000211
E10.0000035
H2811430.9884609
L160.0000563
N40.0000141
R20.0000070
X22680.0079740
Y950.0003340
N969-40.0000141
K2819300.9912279
R10.0000035
T20.0000070
X22060.0077560
K1045E60.0000211
N230.0000809
Q10.0000035
R21030.0073939
T40.0000141
X11240.0039518
G1124A210.0000738
C150.0000527
D300.0001055
S310.0001090
V11190.0039343
X24050.0084557
P1162-10.0000035
A70.0000246
L5560.0019548
Q140.0000492
R90.0000316
S8080.0028408
T40.0000141
X9210.0032381
C1243-190.0000668
F21440.0075380
R40.0000141
S10.0000035
W10.0000035
X13770.0048413
Y40.0000141
V1264-50.0000176
A120.0000422
E10.0000035
F20.0000070
L8630.0030342
M160.0000563
X10290.0036178


Table 1B. Details regarding common mutations listed in A and their geographic locations.


oriposmutcovariationslocation# of occurrences#seqs from local#seqs from state/province#seqs from country#seqs from continent
L5-L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GNetherlands_Gelderland13243458Europe 110812
L5-L5-,T19I,L24-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,K1045X,D614GNetherlands_Utrecht34893458Europe 110812
L5-T19R,G142D,W152L,E156G,F157-,R158-,F186L,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GNetherlands_Utrecht14893458Europe 110812
L5-L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GNetherlands_Gelderland13243458Europe 110812
L5-L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GNetherlands_Noord-Holland18823458Europe 110812
L5-L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GNetherlands_Friesland12743458Europe 110812
L5-L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,G184V,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GNetherlands_Friesland12743458Europe 110812
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L5FL5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GPortugal11137Europe 110812
L5FL5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GPortugal51137Europe 110812
L5FL5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,S256L,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417X,N440X,K444X,V445X,G446X,L452X,Y453X,F456X,N460X,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GIsrael12007Asia 57089
L5FL5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GPortugal11137Europe 110812
L5FL5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,L368X,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GJapan_Tochigi11729629Asia 57089
L5FL5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257D,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GJapan_Miyazaki11339629Asia 57089
L5FL5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GJapan_Tochigi41729629Asia 57089
L5FL5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614GIsrael12007Asia 57089
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