COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: Dec 6, 2023
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Collection dates: 2023-09-08 - 2023-12-05
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 184,890
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | F | 1869 | 0.0101087 |
| I | 4 | 0.0000216 | ||
| V | 7 | 0.0000379 | ||
| X | 3282 | 0.0177511 | ||
| Q | 14 | - | 28 | 0.0001514 |
| A | 1 | 0.0000054 | ||
| E | 10 | 0.0000541 | ||
| H | 1139 | 0.0061604 | ||
| K | 1652 | 0.0089350 | ||
| L | 9 | 0.0000487 | ||
| R | 706 | 0.0038185 | ||
| X | 2291 | 0.0123912 | ||
| T | 19 | - | 8 | 0.0000433 |
| F | 2 | 0.0000108 | ||
| I | 177673 | 0.9609660 | ||
| L | 546 | 0.0029531 | ||
| N | 1 | 0.0000054 | ||
| R | 77 | 0.0004165 | ||
| V | 18 | 0.0000974 | ||
| X | 5710 | 0.0308832 | ||
| R | 21 | - | 61 | 0.0003299 |
| A | 1 | 0.0000054 | ||
| G | 77 | 0.0004165 | ||
| I | 6 | 0.0000325 | ||
| K | 15 | 0.0000811 | ||
| S | 4 | 0.0000216 | ||
| T | 7191 | 0.0388934 | ||
| X | 3586 | 0.0193953 | ||
| L | 24 | - | 176638 | 0.9553681 |
| I | 2 | 0.0000108 | ||
| S | 44 | 0.0002380 | ||
| X | 6131 | 0.0331603 | ||
| P | 25 | - | 176799 | 0.9562388 |
| F | 1 | 0.0000054 | ||
| H | 1 | 0.0000054 | ||
| I | 1 | 0.0000054 | ||
| Q | 1 | 0.0000054 | ||
| S | 1109 | 0.0059982 | ||
| X | 6563 | 0.0354968 | ||
| Y | 7 | 0.0000379 | ||
| P | 26 | - | 177611 | 0.9606306 |
| K | 1 | 0.0000054 | ||
| L | 1 | 0.0000054 | ||
| Q | 2 | 0.0000108 | ||
| S | 14 | 0.0000757 | ||
| X | 5785 | 0.0312889 | ||
| A | 27 | - | 995 | 0.0053816 |
| L | 2 | 0.0000108 | ||
| S | 177141 | 0.9580886 | ||
| V | 1 | 0.0000054 | ||
| X | 4998 | 0.0270323 | ||
| S | 50 | A | 1 | 0.0000054 |
| L | 7742 | 0.0418735 | ||
| P | 4 | 0.0000216 | ||
| X | 6911 | 0.0373790 | ||
| Q | 52 | H | 84392 | 0.4564444 |
| K | 6 | 0.0000325 | ||
| L | 5 | 0.0000270 | ||
| P | 1 | 0.0000054 | ||
| R | 192 | 0.0010385 | ||
| X | 7973 | 0.0431229 | ||
| Y | 41 | 0.0002218 | ||
| A | 67 | - | 6 | 0.0000325 |
| D | 1 | 0.0000054 | ||
| S | 491 | 0.0026556 | ||
| T | 6 | 0.0000325 | ||
| V | 159 | 0.0008600 | ||
| X | 4806 | 0.0259938 | ||
| H | 69 | - | 7714 | 0.0417221 |
| D | 2 | 0.0000108 | ||
| F | 3 | 0.0000162 | ||
| L | 3 | 0.0000162 | ||
| N | 6 | 0.0000325 | ||
| P | 1 | 0.0000054 | ||
| Q | 1 | 0.0000054 | ||
| R | 4 | 0.0000216 | ||
| S | 1 | 0.0000054 | ||
| X | 5624 | 0.0304181 | ||
| Y | 271 | 0.0014657 | ||
| V | 70 | - | 7824 | 0.0423171 |
| A | 14 | 0.0000757 | ||
| D | 2 | 0.0000108 | ||
| F | 68 | 0.0003678 | ||
| I | 32 | 0.0001731 | ||
| L | 21 | 0.0001136 | ||
| X | 5465 | 0.0295581 | ||
| G | 75 | - | 13 | 0.0000703 |
| A | 96 | 0.0005192 | ||
| D | 37 | 0.0002001 | ||
| E | 1 | 0.0000054 | ||
| R | 24 | 0.0001298 | ||
| S | 48 | 0.0002596 | ||
| V | 337 | 0.0018227 | ||
| X | 4729 | 0.0255774 | ||
| V | 83 | - | 12 | 0.0000649 |
| A | 164280 | 0.8885283 | ||
| D | 1 | 0.0000054 | ||
| F | 10 | 0.0000541 | ||
| L | 1 | 0.0000054 | ||
| P | 3 | 0.0000162 | ||
| S | 82 | 0.0004435 | ||
| T | 119 | 0.0006436 | ||
| X | 6905 | 0.0373465 | ||
| T | 95 | - | 4 | 0.0000216 |
| A | 45 | 0.0002434 | ||
| I | 511 | 0.0027638 | ||
| N | 29 | 0.0001569 | ||
| S | 8 | 0.0000433 | ||
| X | 5400 | 0.0292066 | ||
| V | 127 | - | 3 | 0.0000162 |
| A | 1 | 0.0000054 | ||
| F | 8223 | 0.0444751 | ||
| G | 1 | 0.0000054 | ||
| I | 11 | 0.0000595 | ||
| X | 2905 | 0.0157120 | ||
| G | 142 | - | 413 | 0.0022338 |
| A | 5 | 0.0000270 | ||
| C | 1 | 0.0000054 | ||
| D | 180512 | 0.9763211 | ||
| E | 1 | 0.0000054 | ||
| H | 1 | 0.0000054 | ||
| K | 1 | 0.0000054 | ||
| M | 2 | 0.0000108 | ||
| N | 4 | 0.0000216 | ||
| Q | 2 | 0.0000108 | ||
| R | 1 | 0.0000054 | ||
| V | 1 | 0.0000054 | ||
| X | 3326 | 0.0179891 | ||
| Y | 7 | 0.0000379 | ||
| V | 143 | - | 420 | 0.0022716 |
| A | 45 | 0.0002434 | ||
| C | 1 | 0.0000054 | ||
| D | 161 | 0.0008708 | ||
| F | 15 | 0.0000811 | ||
| I | 6 | 0.0000325 | ||
| K | 1 | 0.0000054 | ||
| Q | 8 | 0.0000433 | ||
| X | 2695 | 0.0145762 | ||
| Y | 144 | - | 168645 | 0.9121369 |
| C | 2 | 0.0000108 | ||
| D | 4 | 0.0000216 | ||
| F | 22 | 0.0001190 | ||
| I | 1 | 0.0000054 | ||
| K | 4 | 0.0000216 | ||
| L | 2 | 0.0000108 | ||
| N | 3 | 0.0000162 | ||
| Q | 178 | 0.0009627 | ||
| S | 12 | 0.0000649 | ||
| X | 9007 | 0.0487155 | ||
| Y | 145 | - | 445 | 0.0024068 |
| D | 9 | 0.0000487 | ||
| H | 2 | 0.0000108 | ||
| K | 65 | 0.0003516 | ||
| L | 10 | 0.0000541 | ||
| N | 65 | 0.0003516 | ||
| P | 83 | 0.0004489 | ||
| Q | 230 | 0.0012440 | ||
| R | 36 | 0.0001947 | ||
| S | 2 | 0.0000108 | ||
| T | 2 | 0.0000108 | ||
| X | 3718 | 0.0201093 | ||
| H | 146 | - | 838 | 0.0045324 |
| E | 17 | 0.0000919 | ||
| K | 7123 | 0.0385256 | ||
| L | 10 | 0.0000541 | ||
| N | 12 | 0.0000649 | ||
| P | 27 | 0.0001460 | ||
| Q | 158568 | 0.8576343 | ||
| R | 3 | 0.0000162 | ||
| T | 3 | 0.0000162 | ||
| X | 4665 | 0.0252312 | ||
| Y | 1 | 0.0000054 | ||
| K | 147 | - | 107 | 0.0005787 |
| E | 3303 | 0.0178647 | ||
| I | 25 | 0.0001352 | ||
| N | 2619 | 0.0141652 | ||
| Q | 8 | 0.0000433 | ||
| R | 3 | 0.0000162 | ||
| X | 2243 | 0.0121315 | ||
| N | 148 | - | 4 | 0.0000216 |
| D | 10 | 0.0000541 | ||
| H | 9 | 0.0000487 | ||
| K | 11 | 0.0000595 | ||
| S | 30 | 0.0001623 | ||
| T | 916 | 0.0049543 | ||
| X | 2230 | 0.0120612 | ||
| Y | 14 | 0.0000757 | ||
| W | 152 | - | 5 | 0.0000270 |
| C | 1 | 0.0000054 | ||
| F | 2 | 0.0000108 | ||
| G | 4 | 0.0000216 | ||
| L | 112 | 0.0006058 | ||
| R | 3462 | 0.0187246 | ||
| X | 2220 | 0.0120071 | ||
| M | 153 | - | 3 | 0.0000162 |
| I | 560 | 0.0030288 | ||
| K | 5 | 0.0000270 | ||
| L | 1 | 0.0000054 | ||
| R | 8 | 0.0000433 | ||
| T | 34 | 0.0001839 | ||
| V | 77 | 0.0004165 | ||
| X | 2539 | 0.0137325 | ||
| E | 156 | - | 5 | 0.0000270 |
| A | 5 | 0.0000270 | ||
| D | 14 | 0.0000757 | ||
| G | 1167 | 0.0063119 | ||
| K | 2 | 0.0000108 | ||
| Q | 64 | 0.0003462 | ||
| V | 5 | 0.0000270 | ||
| X | 2507 | 0.0135594 | ||
| F | 157 | - | 1169 | 0.0063227 |
| L | 26123 | 0.1412894 | ||
| S | 8101 | 0.0438152 | ||
| V | 1 | 0.0000054 | ||
| X | 2951 | 0.0159608 | ||
| Y | 2 | 0.0000108 | ||
| R | 158 | - | 1168 | 0.0063173 |
| G | 8070 | 0.0436476 | ||
| I | 4 | 0.0000216 | ||
| K | 28 | 0.0001514 | ||
| S | 30 | 0.0001623 | ||
| T | 32 | 0.0001731 | ||
| X | 2767 | 0.0149657 | ||
| L | 176 | - | 2 | 0.0000108 |
| F | 565 | 0.0030559 | ||
| H | 1 | 0.0000054 | ||
| P | 7 | 0.0000379 | ||
| V | 23 | 0.0001244 | ||
| X | 4195 | 0.0226892 | ||
| E | 180 | - | 8 | 0.0000433 |
| A | 2 | 0.0000108 | ||
| D | 150 | 0.0008113 | ||
| G | 3 | 0.0000162 | ||
| I | 4 | 0.0000216 | ||
| K | 25 | 0.0001352 | ||
| L | 2 | 0.0000108 | ||
| Q | 66 | 0.0003570 | ||
| V | 26511 | 0.1433880 | ||
| X | 4126 | 0.0223160 | ||
| G | 181 | - | 105 | 0.0005679 |
| A | 122 | 0.0006599 | ||
| E | 75 | 0.0004056 | ||
| L | 1 | 0.0000054 | ||
| R | 222 | 0.0012007 | ||
| V | 356 | 0.0019255 | ||
| X | 2758 | 0.0149170 | ||
| K | 182 | - | 120 | 0.0006490 |
| E | 457 | 0.0024717 | ||
| I | 138 | 0.0007464 | ||
| N | 3083 | 0.0166748 | ||
| Q | 599 | 0.0032398 | ||
| R | 23 | 0.0001244 | ||
| T | 13 | 0.0000703 | ||
| X | 2831 | 0.0153118 | ||
| Q | 183 | - | 130 | 0.0007031 |
| A | 3 | 0.0000162 | ||
| D | 79 | 0.0004273 | ||
| E | 167886 | 0.9080318 | ||
| G | 34 | 0.0001839 | ||
| H | 17 | 0.0000919 | ||
| K | 37 | 0.0002001 | ||
| R | 4 | 0.0000216 | ||
| V | 10 | 0.0000541 | ||
| X | 3312 | 0.0179134 | ||
| G | 184 | - | 130 | 0.0007031 |
| A | 103 | 0.0005571 | ||
| C | 1 | 0.0000054 | ||
| D | 91 | 0.0004922 | ||
| I | 1 | 0.0000054 | ||
| S | 511 | 0.0027638 | ||
| V | 1038 | 0.0056141 | ||
| X | 2822 | 0.0152631 | ||
| N | 185 | - | 116 | 0.0006274 |
| D | 6124 | 0.0331224 | ||
| G | 1 | 0.0000054 | ||
| I | 2443 | 0.0132133 | ||
| K | 21 | 0.0001136 | ||
| S | 150 | 0.0008113 | ||
| T | 9 | 0.0000487 | ||
| V | 1 | 0.0000054 | ||
| X | 3040 | 0.0164422 | ||
| Y | 17 | 0.0000919 | ||
| F | 186 | - | 2424 | 0.0131105 |
| I | 3 | 0.0000162 | ||
| L | 356 | 0.0019255 | ||
| S | 345 | 0.0018660 | ||
| V | 1 | 0.0000054 | ||
| X | 2998 | 0.0162150 | ||
| Y | 13 | 0.0000703 | ||
| Y | 200 | - | 2 | 0.0000108 |
| C | 2246 | 0.0121478 | ||
| H | 1 | 0.0000054 | ||
| N | 1 | 0.0000054 | ||
| X | 2455 | 0.0132782 | ||
| P | 209 | H | 3 | 0.0000162 |
| L | 1121 | 0.0060631 | ||
| S | 7 | 0.0000379 | ||
| T | 5 | 0.0000270 | ||
| X | 2345 | 0.0126832 | ||
| I | 210 | - | 147 | 0.0007951 |
| A | 1 | 0.0000054 | ||
| F | 9 | 0.0000487 | ||
| S | 4 | 0.0000216 | ||
| T | 222 | 0.0012007 | ||
| V | 3475 | 0.0187950 | ||
| X | 2188 | 0.0118341 | ||
| N | 211 | - | 7955 | 0.0430256 |
| D | 2 | 0.0000108 | ||
| E | 4 | 0.0000216 | ||
| G | 3 | 0.0000162 | ||
| H | 1 | 0.0000054 | ||
| I | 99 | 0.0005355 | ||
| K | 1 | 0.0000054 | ||
| S | 14 | 0.0000757 | ||
| X | 2408 | 0.0130240 | ||
| Y | 3 | 0.0000162 | ||
| L | 212 | - | 9 | 0.0000487 |
| E | 1 | 0.0000054 | ||
| F | 1 | 0.0000054 | ||
| G | 2 | 0.0000108 | ||
| I | 7959 | 0.0430472 | ||
| S | 1186 | 0.0064146 | ||
| X | 2458 | 0.0132944 | ||
| V | 213 | - | 11 | 0.0000595 |
| D | 153 | 0.0008275 | ||
| E | 169198 | 0.9151279 | ||
| G | 11799 | 0.0638163 | ||
| H | 1 | 0.0000054 | ||
| K | 7 | 0.0000379 | ||
| Q | 3 | 0.0000162 | ||
| R | 6 | 0.0000325 | ||
| X | 2500 | 0.0135216 | ||
| D | 215 | - | 1 | 0.0000054 |
| A | 2 | 0.0000108 | ||
| E | 1 | 0.0000054 | ||
| G | 426 | 0.0023041 | ||
| H | 1680 | 0.0090865 | ||
| N | 30 | 0.0001623 | ||
| V | 74 | 0.0004002 | ||
| X | 2246 | 0.0121478 | ||
| Y | 123 | 0.0006653 | ||
| L | 216 | - | 1 | 0.0000054 |
| F | 8237 | 0.0445508 | ||
| I | 3 | 0.0000162 | ||
| P | 2 | 0.0000108 | ||
| X | 2294 | 0.0124074 | ||
| A | 222 | D | 13 | 0.0000703 |
| I | 1 | 0.0000054 | ||
| P | 25 | 0.0001352 | ||
| S | 99 | 0.0005355 | ||
| T | 10 | 0.0000541 | ||
| V | 1333 | 0.0072097 | ||
| X | 2263 | 0.0122397 | ||
| A | 243 | - | 1213 | 0.0065607 |
| G | 2 | 0.0000108 | ||
| S | 38 | 0.0002055 | ||
| T | 5 | 0.0000270 | ||
| V | 14 | 0.0000757 | ||
| X | 17303 | 0.0935854 | ||
| L | 244 | - | 1228 | 0.0066418 |
| F | 23 | 0.0001244 | ||
| I | 1 | 0.0000054 | ||
| Q | 1 | 0.0000054 | ||
| S | 5 | 0.0000270 | ||
| X | 17147 | 0.0927416 | ||
| H | 245 | - | 26 | 0.0001406 |
| D | 1 | 0.0000054 | ||
| N | 8195 | 0.0443237 | ||
| R | 14 | 0.0000757 | ||
| S | 2 | 0.0000108 | ||
| X | 17045 | 0.0921900 | ||
| Y | 450 | 0.0024339 | ||
| Y | 248 | - | 9 | 0.0000487 |
| C | 4 | 0.0000216 | ||
| F | 1 | 0.0000054 | ||
| H | 662 | 0.0035805 | ||
| R | 1 | 0.0000054 | ||
| X | 17057 | 0.0922549 | ||
| G | 252 | - | 22 | 0.0001190 |
| A | 6 | 0.0000325 | ||
| D | 2 | 0.0000108 | ||
| F | 12 | 0.0000649 | ||
| I | 23 | 0.0001244 | ||
| K | 1 | 0.0000054 | ||
| N | 1 | 0.0000054 | ||
| Q | 1 | 0.0000054 | ||
| T | 7 | 0.0000379 | ||
| V | 143770 | 0.7775975 | ||
| X | 17376 | 0.0939802 | ||
| D | 253 | - | 16 | 0.0000865 |
| A | 6 | 0.0000325 | ||
| C | 1 | 0.0000054 | ||
| E | 60 | 0.0003245 | ||
| G | 11846 | 0.0640705 | ||
| L | 1 | 0.0000054 | ||
| N | 6 | 0.0000325 | ||
| Q | 6 | 0.0000325 | ||
| S | 1 | 0.0000054 | ||
| V | 11 | 0.0000595 | ||
| X | 17426 | 0.0942506 | ||
| Y | 10 | 0.0000541 | ||
| S | 256 | - | 10 | 0.0000541 |
| A | 4 | 0.0000216 | ||
| C | 1 | 0.0000054 | ||
| L | 1694 | 0.0091622 | ||
| P | 60 | 0.0003245 | ||
| T | 52 | 0.0002812 | ||
| X | 17875 | 0.0966791 | ||
| Y | 1 | 0.0000054 | ||
| G | 257 | - | 24 | 0.0001298 |
| C | 2 | 0.0000108 | ||
| D | 67 | 0.0003624 | ||
| L | 2 | 0.0000108 | ||
| N | 1 | 0.0000054 | ||
| R | 8 | 0.0000433 | ||
| S | 3468 | 0.0187571 | ||
| V | 527 | 0.0028503 | ||
| X | 17842 | 0.0965006 | ||
| A | 264 | - | 7 | 0.0000379 |
| D | 7974 | 0.0431283 | ||
| S | 38 | 0.0002055 | ||
| T | 26 | 0.0001406 | ||
| V | 20 | 0.0001082 | ||
| X | 15934 | 0.0861810 | ||
| Y | 1 | 0.0000054 | ||
| K | 304 | N | 2792 | 0.0151009 |
| Q | 305 | 0.0016496 | ||
| T | 2 | 0.0000108 | ||
| X | 4585 | 0.0247985 | ||
| T | 307 | - | 1 | 0.0000054 |
| I | 1399 | 0.0075667 | ||
| N | 2 | 0.0000108 | ||
| S | 14 | 0.0000757 | ||
| X | 4739 | 0.0256315 | ||
| I | 332 | M | 2 | 0.0000108 |
| T | 2 | 0.0000108 | ||
| V | 8090 | 0.0437557 | ||
| X | 4885 | 0.0264211 | ||
| L | 335 | F | 219 | 0.0011845 |
| S | 951 | 0.0051436 | ||
| V | 1 | 0.0000054 | ||
| X | 4662 | 0.0252150 | ||
| G | 339 | D | 291 | 0.0015739 |
| H | 178093 | 0.9632376 | ||
| I | 1 | 0.0000054 | ||
| L | 1 | 0.0000054 | ||
| N | 5 | 0.0000270 | ||
| P | 1 | 0.0000054 | ||
| Q | 2 | 0.0000108 | ||
| R | 130 | 0.0007031 | ||
| S | 3 | 0.0000162 | ||
| X | 5048 | 0.0273027 | ||
| Y | 48 | 0.0002596 | ||
| A | 344 | D | 2 | 0.0000108 |
| S | 110 | 0.0005949 | ||
| T | 953 | 0.0051544 | ||
| V | 19 | 0.0001028 | ||
| X | 6114 | 0.0330683 | ||
| R | 346 | - | 102 | 0.0005517 |
| A | 8 | 0.0000433 | ||
| E | 1 | 0.0000054 | ||
| I | 99 | 0.0005355 | ||
| K | 7 | 0.0000379 | ||
| N | 1 | 0.0000054 | ||
| P | 4 | 0.0000216 | ||
| S | 800 | 0.0043269 | ||
| T | 168480 | 0.9112445 | ||
| X | 6550 | 0.0354265 | ||
| K | 356 | E | 8 | 0.0000433 |
| L | 1 | 0.0000054 | ||
| M | 2 | 0.0000108 | ||
| N | 1 | 0.0000054 | ||
| Q | 25 | 0.0001352 | ||
| R | 3 | 0.0000162 | ||
| T | 9356 | 0.0506031 | ||
| X | 7237 | 0.0391422 | ||
| L | 368 | I | 163748 | 0.8856509 |
| M | 5 | 0.0000270 | ||
| T | 1 | 0.0000054 | ||
| V | 19 | 0.0001028 | ||
| X | 7910 | 0.0427822 | ||
| S | 371 | F | 176430 | 0.9542431 |
| L | 13 | 0.0000703 | ||
| X | 8107 | 0.0438477 | ||
| S | 373 | A | 1 | 0.0000054 |
| F | 2 | 0.0000108 | ||
| P | 176354 | 0.9538320 | ||
| Q | 1 | 0.0000054 | ||
| T | 2 | 0.0000108 | ||
| X | 8343 | 0.0451241 | ||
| Y | 14 | 0.0000757 | ||
| S | 375 | - | 63 | 0.0003407 |
| A | 47 | 0.0002542 | ||
| F | 175415 | 0.9487533 | ||
| L | 1 | 0.0000054 | ||
| X | 8875 | 0.0480015 | ||
| T | 376 | - | 148 | 0.0008005 |
| A | 175559 | 0.9495322 | ||
| D | 1 | 0.0000054 | ||
| G | 3 | 0.0000162 | ||
| L | 14 | 0.0000757 | ||
| P | 1 | 0.0000054 | ||
| S | 1 | 0.0000054 | ||
| V | 7 | 0.0000379 | ||
| X | 8756 | 0.0473579 | ||
| R | 403 | G | 1 | 0.0000054 |
| K | 8861 | 0.0479258 | ||
| S | 1 | 0.0000054 | ||
| T | 3 | 0.0000162 | ||
| X | 9170 | 0.0495971 | ||
| D | 405 | - | 2 | 0.0000108 |
| H | 1 | 0.0000054 | ||
| N | 178806 | 0.9670939 | ||
| S | 13 | 0.0000703 | ||
| X | 5687 | 0.0307588 | ||
| Y | 2 | 0.0000108 | ||
| R | 408 | G | 32 | 0.0001731 |
| I | 5 | 0.0000270 | ||
| N | 66 | 0.0003570 | ||
| S | 175081 | 0.9469468 | ||
| T | 1 | 0.0000054 | ||
| X | 7264 | 0.0392882 | ||
| K | 417 | D | 1 | 0.0000054 |
| H | 1 | 0.0000054 | ||
| I | 6 | 0.0000325 | ||
| N | 172711 | 0.9341284 | ||
| R | 1 | 0.0000054 | ||
| S | 5 | 0.0000270 | ||
| T | 8 | 0.0000433 | ||
| X | 10579 | 0.0572178 | ||
| N | 440 | - | 2 | 0.0000108 |
| K | 178123 | 0.9633999 | ||
| R | 58 | 0.0003137 | ||
| X | 6352 | 0.0343556 | ||
| K | 444 | M | 9 | 0.0000487 |
| N | 107 | 0.0005787 | ||
| R | 91 | 0.0004922 | ||
| T | 3747 | 0.0202661 | ||
| X | 5959 | 0.0322300 | ||
| V | 445 | A | 114 | 0.0006166 |
| F | 1 | 0.0000054 | ||
| H | 7875 | 0.0425929 | ||
| I | 1 | 0.0000054 | ||
| L | 40 | 0.0002163 | ||
| P | 164748 | 0.8910595 | ||
| S | 66 | 0.0003570 | ||
| T | 3 | 0.0000162 | ||
| X | 7093 | 0.0383634 | ||
| Y | 2 | 0.0000108 | ||
| G | 446 | D | 76 | 0.0004111 |
| I | 61 | 0.0003299 | ||
| N | 17 | 0.0000919 | ||
| S | 177298 | 0.9589377 | ||
| T | 12 | 0.0000649 | ||
| X | 6914 | 0.0373952 | ||
| N | 450 | D | 8664 | 0.0468603 |
| I | 9 | 0.0000487 | ||
| K | 14 | 0.0000757 | ||
| X | 5766 | 0.0311861 | ||
| Y | 6 | 0.0000325 | ||
| L | 452 | K | 2 | 0.0000108 |
| M | 396 | 0.0021418 | ||
| Q | 340 | 0.0018389 | ||
| R | 22319 | 0.1207150 | ||
| V | 1 | 0.0000054 | ||
| W | 7855 | 0.0424847 | ||
| X | 5984 | 0.0323652 | ||
| L | 455 | - | 9 | 0.0000487 |
| F | 47118 | 0.2548434 | ||
| S | 3595 | 0.0194440 | ||
| W | 256 | 0.0013846 | ||
| X | 6708 | 0.0362810 | ||
| F | 456 | - | 1 | 0.0000054 |
| L | 128798 | 0.6966196 | ||
| S | 2 | 0.0000108 | ||
| V | 7 | 0.0000379 | ||
| X | 7299 | 0.0394775 | ||
| N | 460 | - | 2 | 0.0000108 |
| D | 1 | 0.0000054 | ||
| E | 5 | 0.0000270 | ||
| H | 237 | 0.0012818 | ||
| K | 176448 | 0.9543404 | ||
| R | 1 | 0.0000054 | ||
| S | 1 | 0.0000054 | ||
| T | 2 | 0.0000108 | ||
| X | 6467 | 0.0349776 | ||
| Y | 3 | 0.0000162 | ||
| A | 475 | G | 2 | 0.0000108 |
| S | 25 | 0.0001352 | ||
| T | 1 | 0.0000054 | ||
| V | 7796 | 0.0421656 | ||
| X | 4450 | 0.0240684 | ||
| S | 477 | D | 9 | 0.0000487 |
| I | 1 | 0.0000054 | ||
| K | 41 | 0.0002218 | ||
| N | 179190 | 0.9691709 | ||
| R | 1 | 0.0000054 | ||
| X | 4892 | 0.0264590 | ||
| Y | 1 | 0.0000054 | ||
| T | 478 | E | 51 | 0.0002758 |
| G | 2 | 0.0000108 | ||
| I | 689 | 0.0037265 | ||
| K | 128408 | 0.6945102 | ||
| N | 187 | 0.0010114 | ||
| Q | 73 | 0.0003948 | ||
| R | 49419 | 0.2672887 | ||
| X | 5195 | 0.0280978 | ||
| N | 481 | D | 7 | 0.0000379 |
| E | 1 | 0.0000054 | ||
| G | 4 | 0.0000216 | ||
| H | 4 | 0.0000216 | ||
| I | 9 | 0.0000487 | ||
| K | 8876 | 0.0480069 | ||
| R | 13 | 0.0000703 | ||
| S | 80 | 0.0004327 | ||
| T | 6 | 0.0000325 | ||
| X | 4187 | 0.0226459 | ||
| Y | 46 | 0.0002488 | ||
| V | 483 | - | 6365 | 0.0344259 |
| A | 20 | 0.0001082 | ||
| F | 47 | 0.0002542 | ||
| G | 6 | 0.0000325 | ||
| I | 38 | 0.0002055 | ||
| K | 14 | 0.0000757 | ||
| L | 5 | 0.0000270 | ||
| T | 1 | 0.0000054 | ||
| X | 5334 | 0.0288496 | ||
| E | 484 | - | 15 | 0.0000811 |
| A | 171342 | 0.9267240 | ||
| K | 7891 | 0.0426794 | ||
| P | 3 | 0.0000162 | ||
| R | 8 | 0.0000433 | ||
| S | 15 | 0.0000811 | ||
| T | 15 | 0.0000811 | ||
| V | 42 | 0.0002272 | ||
| X | 4780 | 0.0258532 | ||
| F | 486 | - | 1 | 0.0000054 |
| A | 31 | 0.0001677 | ||
| H | 8 | 0.0000433 | ||
| I | 2 | 0.0000108 | ||
| L | 154 | 0.0008329 | ||
| P | 175628 | 0.9499053 | ||
| R | 1 | 0.0000054 | ||
| S | 3611 | 0.0195305 | ||
| T | 2 | 0.0000108 | ||
| V | 107 | 0.0005787 | ||
| X | 4698 | 0.0254097 | ||
| F | 490 | A | 9 | 0.0000487 |
| P | 1201 | 0.0064958 | ||
| S | 166552 | 0.9008167 | ||
| T | 2 | 0.0000108 | ||
| V | 1 | 0.0000054 | ||
| X | 3737 | 0.0202120 | ||
| Y | 7 | 0.0000379 | ||
| S | 494 | - | 1 | 0.0000054 |
| A | 6 | 0.0000325 | ||
| L | 3 | 0.0000162 | ||
| P | 2549 | 0.0137866 | ||
| T | 1 | 0.0000054 | ||
| X | 3127 | 0.0169128 | ||
| Q | 498 | F | 1 | 0.0000054 |
| R | 179654 | 0.9716805 | ||
| X | 4711 | 0.0254800 | ||
| N | 501 | F | 2 | 0.0000108 |
| S | 1 | 0.0000054 | ||
| T | 1 | 0.0000054 | ||
| X | 4437 | 0.0239981 | ||
| Y | 180039 | 0.9737628 | ||
| Y | 505 | H | 179548 | 0.9711071 |
| N | 2 | 0.0000108 | ||
| Q | 2 | 0.0000108 | ||
| X | 4650 | 0.0251501 | ||
| V | 511 | A | 1 | 0.0000054 |
| I | 1457 | 0.0078804 | ||
| L | 1 | 0.0000054 | ||
| X | 2889 | 0.0156255 | ||
| P | 521 | L | 8 | 0.0000433 |
| Q | 67 | 0.0003624 | ||
| S | 13130 | 0.0710152 | ||
| T | 4462 | 0.0241333 | ||
| X | 5470 | 0.0295852 | ||
| T | 547 | A | 3 | 0.0000162 |
| I | 2281 | 0.0123371 | ||
| K | 86 | 0.0004651 | ||
| S | 1 | 0.0000054 | ||
| X | 706 | 0.0038185 | ||
| E | 554 | A | 119 | 0.0006436 |
| D | 126 | 0.0006815 | ||
| G | 92 | 0.0004976 | ||
| K | 12569 | 0.0679810 | ||
| N | 4 | 0.0000216 | ||
| Q | 280 | 0.0015144 | ||
| R | 1 | 0.0000054 | ||
| V | 99 | 0.0005355 | ||
| X | 670 | 0.0036238 | ||
| A | 570 | D | 1 | 0.0000054 |
| G | 1 | 0.0000054 | ||
| S | 8 | 0.0000433 | ||
| T | 4 | 0.0000216 | ||
| V | 8329 | 0.0450484 | ||
| X | 440 | 0.0023798 | ||
| T | 572 | A | 2 | 0.0000108 |
| I | 1608 | 0.0086971 | ||
| N | 2 | 0.0000108 | ||
| S | 5 | 0.0000270 | ||
| X | 339 | 0.0018335 | ||
| T | 573 | A | 2 | 0.0000108 |
| I | 4384 | 0.0237114 | ||
| X | 328 | 0.0017740 | ||
| Q | 613 | - | 1 | 0.0000054 |
| E | 13 | 0.0000703 | ||
| H | 2860 | 0.0154687 | ||
| L | 1 | 0.0000054 | ||
| X | 825 | 0.0044621 | ||
| Y | 2 | 0.0000108 | ||
| E | 619 | - | 2 | 0.0000108 |
| A | 2 | 0.0000108 | ||
| D | 16 | 0.0000865 | ||
| G | 1 | 0.0000054 | ||
| K | 106 | 0.0005733 | ||
| Q | 451 | 0.0024393 | ||
| V | 9 | 0.0000487 | ||
| X | 810 | 0.0043810 | ||
| P | 621 | - | 3 | 0.0000162 |
| A | 11 | 0.0000595 | ||
| F | 3 | 0.0000162 | ||
| H | 11 | 0.0000595 | ||
| L | 15 | 0.0000811 | ||
| R | 9 | 0.0000487 | ||
| S | 8532 | 0.0461464 | ||
| T | 8 | 0.0000433 | ||
| X | 876 | 0.0047380 | ||
| E | 654 | - | 1 | 0.0000054 |
| A | 6 | 0.0000325 | ||
| D | 10 | 0.0000541 | ||
| K | 430 | 0.0023257 | ||
| Q | 84 | 0.0004543 | ||
| V | 175 | 0.0009465 | ||
| X | 2985 | 0.0161447 | ||
| H | 655 | - | 1 | 0.0000054 |
| F | 10 | 0.0000541 | ||
| X | 3112 | 0.0168316 | ||
| Y | 181698 | 0.9827357 | ||
| Q | 675 | - | 1 | 0.0000054 |
| H | 234 | 0.0012656 | ||
| K | 375 | 0.0020282 | ||
| L | 13 | 0.0000703 | ||
| P | 1 | 0.0000054 | ||
| R | 45 | 0.0002434 | ||
| X | 2685 | 0.0145221 | ||
| Q | 677 | E | 1 | 0.0000054 |
| H | 522 | 0.0028233 | ||
| K | 13 | 0.0000703 | ||
| L | 2 | 0.0000108 | ||
| R | 117 | 0.0006328 | ||
| X | 1020 | 0.0055168 | ||
| N | 679 | - | 2 | 0.0000108 |
| G | 2 | 0.0000108 | ||
| K | 182630 | 0.9877765 | ||
| M | 8 | 0.0000433 | ||
| Q | 1 | 0.0000054 | ||
| R | 245 | 0.0013251 | ||
| T | 1 | 0.0000054 | ||
| X | 1764 | 0.0095408 | ||
| P | 681 | - | 47 | 0.0002542 |
| H | 173622 | 0.9390557 | ||
| L | 4 | 0.0000216 | ||
| Q | 1 | 0.0000054 | ||
| R | 9061 | 0.0490075 | ||
| S | 1 | 0.0000054 | ||
| X | 1911 | 0.0103359 | ||
| Y | 13 | 0.0000703 | ||
| A | 688 | D | 1 | 0.0000054 |
| G | 1 | 0.0000054 | ||
| P | 1 | 0.0000054 | ||
| S | 30 | 0.0001623 | ||
| T | 118 | 0.0006382 | ||
| V | 981 | 0.0053059 | ||
| X | 3306 | 0.0178809 | ||
| A | 701 | - | 1 | 0.0000054 |
| L | 1 | 0.0000054 | ||
| S | 8 | 0.0000433 | ||
| T | 13 | 0.0000703 | ||
| V | 12000 | 0.0649035 | ||
| X | 3223 | 0.0174320 | ||
| N | 703 | - | 1 | 0.0000054 |
| D | 1 | 0.0000054 | ||
| H | 1 | 0.0000054 | ||
| I | 1111 | 0.0060090 | ||
| K | 33 | 0.0001785 | ||
| S | 31 | 0.0001677 | ||
| T | 2 | 0.0000108 | ||
| X | 3133 | 0.0169452 | ||
| Y | 138 | 0.0007464 | ||
| S | 704 | - | 1 | 0.0000054 |
| A | 3 | 0.0000162 | ||
| D | 1 | 0.0000054 | ||
| L | 11572 | 0.0625886 | ||
| P | 3 | 0.0000162 | ||
| T | 3 | 0.0000162 | ||
| X | 3198 | 0.0172968 | ||
| T | 732 | A | 12 | 0.0000649 |
| I | 1108 | 0.0059928 | ||
| S | 1 | 0.0000054 | ||
| X | 3159 | 0.0170858 | ||
| N | 764 | F | 2 | 0.0000108 |
| K | 181540 | 0.9818811 | ||
| Q | 1 | 0.0000054 | ||
| T | 1 | 0.0000054 | ||
| X | 3189 | 0.0172481 | ||
| D | 796 | C | 2 | 0.0000108 |
| F | 1 | 0.0000054 | ||
| H | 89 | 0.0004814 | ||
| S | 1 | 0.0000054 | ||
| X | 4404 | 0.0238196 | ||
| Y | 180273 | 0.9750284 | ||
| P | 809 | - | 1 | 0.0000054 |
| L | 28 | 0.0001514 | ||
| Q | 7 | 0.0000379 | ||
| S | 537 | 0.0029044 | ||
| T | 20 | 0.0001082 | ||
| X | 4865 | 0.0263129 | ||
| L | 858 | - | 1 | 0.0000054 |
| I | 3112 | 0.0168316 | ||
| P | 1 | 0.0000054 | ||
| V | 1 | 0.0000054 | ||
| X | 3466 | 0.0187463 | ||
| S | 939 | F | 8405 | 0.0454595 |
| L | 9 | 0.0000487 | ||
| X | 3849 | 0.0208178 | ||
| Y | 6 | 0.0000325 | ||
| Q | 954 | H | 181143 | 0.9797339 |
| L | 3 | 0.0000162 | ||
| N | 1 | 0.0000054 | ||
| R | 3 | 0.0000162 | ||
| X | 3548 | 0.0191898 | ||
| Y | 43 | 0.0002326 | ||
| N | 969 | K | 181384 | 0.9810374 |
| R | 21 | 0.0001136 | ||
| T | 1 | 0.0000054 | ||
| X | 3388 | 0.0183244 | ||
| P | 1143 | A | 2 | 0.0000108 |
| F | 3 | 0.0000162 | ||
| H | 5 | 0.0000270 | ||
| L | 8278 | 0.0447726 | ||
| S | 32 | 0.0001731 | ||
| X | 690 | 0.0037319 | ||
| D | 1153 | A | 6 | 0.0000325 |
| G | 25 | 0.0001352 | ||
| H | 156 | 0.0008437 | ||
| N | 23 | 0.0001244 | ||
| V | 22 | 0.0001190 | ||
| X | 706 | 0.0038185 | ||
| Y | 423 | 0.0022878 | ||
| P | 1162 | A | 6 | 0.0000325 |
| L | 278 | 0.0015036 | ||
| Q | 5 | 0.0000270 | ||
| R | 30 | 0.0001623 | ||
| S | 648 | 0.0035048 | ||
| T | 2 | 0.0000108 | ||
| X | 779 | 0.0042133 | ||
| V | 1264 | A | 4 | 0.0000216 |
| F | 1 | 0.0000054 | ||
| L | 687 | 0.0037157 | ||
| M | 24 | 0.0001298 | ||
| X | 2454 | 0.0132728 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,A67X,H69X,V70X,G75X,V83X,T95X,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,T732X,N764X,D796X,Q954H,N969K,D614G | Germany_Baden-Wurttemberg_Freiburg | 1 | 86 | 215 | 2872 | Europe 70924 |
| L | 5 | F | L5F,T19I,L24X,P25X,P26-,A27-,Q52H,V83A,T95I,G142D,Y144X,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Spain_Castilla-y-Leon | 1 | 845 | 6544 | Europe 70924 | |
| L | 5 | F | L5F,T19X,R21X,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 10815 | 14652 | Europe 70924 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Ile-de-France_Creteil | 1 | 22 | 1291 | 12896 | Europe 70924 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | USA_Minnesota | 1 | 2513 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Iowa | 1 | 578 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,F186S,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452Q,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas_San-Antonio | 1 | 569 | 3416 | 47127 | North-America 76628 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Iowa | 1 | 578 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,F157L,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Iowa | 1 | 578 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,K182I,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679X,P681X,A688X,A701X,N703X,S704X,T732X,N764K,D796Y,S939X,Q954X,N969X,D614G | USA_Iowa | 1 | 578 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,L176F,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,Q675H,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-Mexico | 2 | 568 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Gifu | 1 | 361 | 6478 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,H655Y,Q675K,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Poland_Malopolskie | 1 | 106 | 753 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N703I,N764K,D796Y,Q954H,N969K,D614G | South-Korea | 1 | 8145 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | South-Korea | 9 | 8145 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408X,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | South-Korea | 1 | 8145 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | South-Korea | 1 | 8145 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Spain_Madrid | 5 | 569 | 6544 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,V127X,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Puerto-Rico | 1 | 473 | North-America 76628 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,A67X,H69X,V70X,G75X,V83X,T95X,V127X,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Puerto-Rico | 2 | 473 | North-America 76628 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Belgium_Wallonie | 1 | 24 | 2463 | Europe 70924 | |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,Q52H,V83A,V127X,G142X,V143X,Y144X,Y145X,H146X,K147X,N148X,W152X,M153X,E156X,F157X,R158X,L176X,E180X,G181X,K182X,Q183X,G184X,N185X,F186X,Y200X,P209X,I210X,N211X,L212X,V213X,D215X,L216X,A222X,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,K304X,T307X,I332X,L335X,G339X,A344X,R346X,K356X,L368X,S371X,S373X,S375X,T376X,R403X,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A688X,N764K,D796Y,Q954H,N969K,D614G | USA_Wyoming | 1 | 179 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Alberta | 10 | 5288 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,Q677R,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Alberta | 17 | 5288 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146K,F157L,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Alberta | 1 | 5288 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York_Onondaga | 1 | 412 | 8296 | 47127 | North-America 76628 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York_Oswego | 1 | 20 | 8296 | 47127 | North-America 76628 |
| L | 5 | F | L5F,Q14K,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Canada_Alberta | 2 | 5288 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52R,V83A,G142D,Y144-,H146Q,K182N,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N450D,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 2 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York_Cayuga | 2 | 49 | 8296 | 47127 | North-America 76628 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 6 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York_Onondaga | 1 | 412 | 8296 | 47127 | North-America 76628 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 2 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,N148T,Q183-,G184-,F186-,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,Q613X,E619X,P621X,E654X,H655X,Q675X,Q677X,N679X,P681X,A688X,A701X,N703X,S704X,T732X,N764X,D796X,P809X,L858X,Q954H,N969K,D614X | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,N148T,Q183-,G184-,F186-,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G257V,T307I,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,A264X,I332X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,A264X,K304X,T307X,I332X,L335X,G339X,A344X,R346X,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,Y200C,V213E,G252V,K304X,T307X,I332X,L335X,G339X,A344X,R346X,K356X,L368I,S371X,S373X,T376A,R403X,D405X,R408X,K417X,N440K,V445P,G446S,N460X,S477X,T478X,N481X,E484A,F486P,F490S,Q498R,N501Y,Y505H,T572I,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,A264X,K304X,T307X,I332X,L335X,G339X,A344X,R346X,K356X,L368X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,A264X,G339H,R346T,K356X,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,E619X,P621X,H655Y,N679K,P681H,A701X,N703X,S704X,N764X,D796X,P809X,L858X,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52R,V83A,G142D,Y144-,H146Q,K182N,Q183E,V213E,D253G,K304X,T307X,I332X,L335X,G339X,A344X,R346X,K356X,L368I,S371F,S373P,T376A,D405N,R408X,K417X,N440X,K444X,V445X,G446X,N450D,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 1 | 2691 | 2691 | 5141 | Oceania 7792 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | United-Kingdom_England | 2 | 10815 | 14652 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Japan_Hyogo | 2 | 351 | 6478 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Brazil_Sao-Paulo_Santana-de-Parnaiba | 1 | 12 | 385 | 1931 | South-America 3499 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,Q675X,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264X,D614G | Brazil_Sao-Paulo_Cotia | 1 | 80 | 385 | 1931 | South-America 3499 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Liaoning | 2 | 173 | 4681 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,E654V,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Sichuan_Guangyuan | 2 | 31 | 825 | 4681 | Asia 25533 |
| L | 5 | F | L5F,T19L,L24X,P25X,P26X,A27X,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | China_Sichuan_Guangyuan | 1 | 31 | 825 | 4681 | Asia 25533 |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,L335S,G339H,R346T,K356X,L368X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Fukuoka | 1 | 237 | 6478 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,F157L,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_British-Columbia | 12 | 5231 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Tokyo | 1 | 958 | 6478 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52R,V83A,G142D,Y144-,H146Q,K182N,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N450D,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Denmark | 2 | 3849 | Europe 70924 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,Y200C,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,T572I,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Denmark | 1 | 3849 | Europe 70924 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Japan_Tokyo | 2 | 958 | 6478 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,F157L,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Ontario | 22 | 14318 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,K147N,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Ontario | 2 | 14318 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,L335S,G339H,R346T,L368I,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | United-Kingdom_Wales | 2 | 1238 | 14652 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,S494P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Connecticut_New-London | 1 | 35 | 565 | 47127 | North-America 76628 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Fukushima | 1 | 315 | 6478 | Asia 25533 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,F157L,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Sweden_Skane | 1 | 581 | 5269 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,S50X,Q52X,A67X,H69X,V70X,G75X,V83X,T95X,G142D,Y144-,H146Q,L176X,E180X,Q183E,V213E,G252V,G339H,A344X,R346X,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | South-Korea | 1 | 8145 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | United-Kingdom_England | 3 | 10815 | 14652 | Europe 70924 | |
| L | 5 | F | L5F,T19I,R21T,L24X,P25X,P26X,A27X,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,N460K,A475V,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,E654X,H655X,Q677X,N679K,P681H,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 10815 | 14652 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,E554Q,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Germany_Munich | 1 | 748 | 2872 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Germany_Munich | 1 | 748 | 2872 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Singapore | 16 | 3289 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,D614G | Germany_Munich | 2 | 748 | 2872 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Germany_Munich | 1 | 748 | 2872 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,A243X,L244X,H245X,Y248X,G252X,D253X,S256X,G257X,A264X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,E554Q,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Germany_Bavaria_Augsburg | 1 | 44 | 809 | 2872 | Europe 70924 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Canary-Islands_Gran-Canaria | 5 | 271 | 354 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Italy_Liguria | 1 | 60 | 4077 | Europe 70924 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445H,G446S,N450D,L452W,L455S,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Bavaria | 1 | 809 | 2872 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Georgia | 1 | 262 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,N185I,F186-,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Georgia | 1 | 262 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,N185I,F186-,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Singapore | 1 | 3289 | Asia 25533 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,F157L,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,L452R,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Spain_Catalunya_Mataro | 1 | 36 | 711 | 6544 | Europe 70924 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Georgia | 1 | 262 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | USA_Georgia | 1 | 262 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145X,H146X,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,V511I,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Norway_Nordland | 1 | 4 | 379 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145X,H146X,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Norway_Nordland | 1 | 4 | 379 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_British-Columbia | 6 | 5231 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,T732I,N764K,D796Y,Q954H,N969K,D614G | Canada_British-Columbia | 2 | 5231 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,K356T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_British-Columbia | 1 | 5231 | 28764 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 3 | 10396 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,A475V,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York | 1 | 8296 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Illinois | 1 | 1146 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144X,Y145X,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovenia | 2 | 906 | Europe 70924 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83X,T95X,G142D,Y144-,H146Q,F157L,Q183E,V213E,G252V,G339H,A344X,R346X,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498X,N501X,Y505X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Italy_Friuli-Venezia-Giulia_Trieste | 1 | 97 | 217 | 4077 | Europe 70924 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | USA_Tennessee | 2 | 80 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Ohio | 1 | 954 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,K182Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Occitanie_Haute-Garonne | 1 | 477 | 1394 | 12896 | Europe 70924 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,Q52H,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Peru_Lima | 1 | 461 | 711 | South-America 3499 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,N185I,F186-,V213E,D253G,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417X,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Sweden_Stockholm | 1 | 1265 | 5269 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417X,N440K,V445P,G446S,F456L,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,T573I,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D614G | Sweden_Stockholm | 1 | 1265 | 5269 | Europe 70924 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,E180V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Virginia | 2 | 1221 | 47127 | North-America 76628 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,K182N,Q183E,V213E,D253G,T307I,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 1 | 3416 | 47127 | North-America 76628 |
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last modified: Sun Jan 22 23:41 2023
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