COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: Feb 3, 2023
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Collection dates: 2022-11-05 - 2023-02-02
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 644,006
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | - | 34 | 0.0000528 |
| F | 7774 | 0.0120713 | ||
| I | 6 | 0.0000093 | ||
| S | 1 | 0.0000016 | ||
| X | 9073 | 0.0140884 | ||
| T | 19 | - | 40 | 0.0000621 |
| I | 621966 | 0.9657767 | ||
| K | 4 | 0.0000062 | ||
| L | 905 | 0.0014053 | ||
| R | 653 | 0.0010140 | ||
| V | 101 | 0.0001568 | ||
| X | 16617 | 0.0258026 | ||
| L | 24 | - | 619940 | 0.9626308 |
| G | 1 | 0.0000016 | ||
| I | 1 | 0.0000016 | ||
| Q | 1 | 0.0000016 | ||
| R | 1 | 0.0000016 | ||
| S | 826 | 0.0012826 | ||
| W | 3 | 0.0000047 | ||
| X | 19605 | 0.0304423 | ||
| P | 25 | - | 620300 | 0.9631898 |
| A | 1 | 0.0000016 | ||
| F | 5 | 0.0000078 | ||
| H | 429 | 0.0006661 | ||
| I | 169 | 0.0002624 | ||
| L | 2 | 0.0000031 | ||
| N | 9 | 0.0000140 | ||
| R | 1 | 0.0000016 | ||
| S | 874 | 0.0013571 | ||
| T | 54 | 0.0000839 | ||
| V | 1 | 0.0000016 | ||
| X | 19625 | 0.0304733 | ||
| Y | 41 | 0.0000637 | ||
| P | 26 | - | 622904 | 0.9672332 |
| H | 37 | 0.0000575 | ||
| I | 1 | 0.0000016 | ||
| L | 1 | 0.0000016 | ||
| N | 2 | 0.0000031 | ||
| Q | 73 | 0.0001134 | ||
| S | 4 | 0.0000062 | ||
| T | 138 | 0.0002143 | ||
| X | 17516 | 0.0271985 | ||
| A | 27 | - | 3030 | 0.0047049 |
| Q | 139 | 0.0002158 | ||
| S | 620188 | 0.9630159 | ||
| X | 17238 | 0.0267668 | ||
| H | 69 | - | 493212 | 0.7658500 |
| A | 54 | 0.0000839 | ||
| C | 1 | 0.0000016 | ||
| E | 1 | 0.0000016 | ||
| F | 745 | 0.0011568 | ||
| I | 1 | 0.0000016 | ||
| L | 40 | 0.0000621 | ||
| P | 5 | 0.0000078 | ||
| Q | 2 | 0.0000031 | ||
| S | 208 | 0.0003230 | ||
| T | 15 | 0.0000233 | ||
| X | 28845 | 0.0447900 | ||
| Y | 94 | 0.0001460 | ||
| V | 70 | - | 497467 | 0.7724571 |
| A | 5 | 0.0000078 | ||
| D | 1 | 0.0000016 | ||
| F | 20 | 0.0000311 | ||
| G | 4 | 0.0000062 | ||
| I | 439 | 0.0006817 | ||
| L | 22 | 0.0000342 | ||
| R | 1 | 0.0000016 | ||
| T | 1 | 0.0000016 | ||
| X | 25385 | 0.0394173 | ||
| Y | 1 | 0.0000016 | ||
| T | 76 | - | 29 | 0.0000450 |
| A | 32 | 0.0000497 | ||
| I | 2047 | 0.0031785 | ||
| N | 13 | 0.0000202 | ||
| S | 18 | 0.0000280 | ||
| X | 16808 | 0.0260991 | ||
| V | 83 | - | 42 | 0.0000652 |
| A | 48487 | 0.0752897 | ||
| D | 1 | 0.0000016 | ||
| F | 296 | 0.0004596 | ||
| I | 14 | 0.0000217 | ||
| L | 42 | 0.0000652 | ||
| P | 4 | 0.0000062 | ||
| S | 1 | 0.0000016 | ||
| T | 10 | 0.0000155 | ||
| X | 18192 | 0.0282482 | ||
| G | 142 | - | 296 | 0.0004596 |
| A | 3 | 0.0000047 | ||
| D | 616859 | 0.9578467 | ||
| E | 2 | 0.0000031 | ||
| I | 1 | 0.0000016 | ||
| K | 1 | 0.0000016 | ||
| N | 2 | 0.0000031 | ||
| X | 21856 | 0.0339376 | ||
| Y | 4 | 0.0000062 | ||
| Y | 144 | - | 90135 | 0.1399599 |
| C | 10 | 0.0000155 | ||
| D | 1 | 0.0000016 | ||
| F | 15 | 0.0000233 | ||
| H | 13 | 0.0000202 | ||
| K | 7 | 0.0000109 | ||
| Q | 28 | 0.0000435 | ||
| S | 1 | 0.0000016 | ||
| V | 1 | 0.0000016 | ||
| X | 16435 | 0.0255199 | ||
| Y | 145 | - | 455 | 0.0007065 |
| C | 3 | 0.0000047 | ||
| D | 3 | 0.0000047 | ||
| E | 1 | 0.0000016 | ||
| G | 2 | 0.0000031 | ||
| H | 2161 | 0.0033556 | ||
| K | 1369 | 0.0021258 | ||
| L | 230 | 0.0003571 | ||
| N | 45 | 0.0000699 | ||
| P | 17 | 0.0000264 | ||
| Q | 43201 | 0.0670817 | ||
| R | 1 | 0.0000016 | ||
| S | 2 | 0.0000031 | ||
| X | 11820 | 0.0183539 | ||
| H | 146 | - | 49367 | 0.0766561 |
| D | 12 | 0.0000186 | ||
| E | 2 | 0.0000031 | ||
| I | 45 | 0.0000699 | ||
| K | 181 | 0.0002811 | ||
| L | 1484 | 0.0023043 | ||
| N | 94 | 0.0001460 | ||
| P | 12 | 0.0000186 | ||
| Q | 3216 | 0.0049937 | ||
| R | 11 | 0.0000171 | ||
| X | 10574 | 0.0164191 | ||
| Y | 468 | 0.0007267 | ||
| K | 147 | - | 1256 | 0.0019503 |
| D | 7 | 0.0000109 | ||
| E | 70597 | 0.1096216 | ||
| G | 2 | 0.0000031 | ||
| I | 1635 | 0.0025388 | ||
| L | 1 | 0.0000016 | ||
| N | 3368 | 0.0052298 | ||
| Q | 939 | 0.0014581 | ||
| R | 76 | 0.0001180 | ||
| T | 232 | 0.0003602 | ||
| X | 10555 | 0.0163896 | ||
| K | 150 | - | 48 | 0.0000745 |
| E | 2720 | 0.0042236 | ||
| I | 40 | 0.0000621 | ||
| N | 378 | 0.0005870 | ||
| Q | 3 | 0.0000047 | ||
| R | 61 | 0.0000947 | ||
| T | 4 | 0.0000062 | ||
| X | 9685 | 0.0150387 | ||
| W | 152 | - | 77 | 0.0001196 |
| C | 2 | 0.0000031 | ||
| F | 1 | 0.0000016 | ||
| G | 9 | 0.0000140 | ||
| L | 1639 | 0.0025450 | ||
| P | 1 | 0.0000016 | ||
| Q | 113 | 0.0001755 | ||
| R | 68998 | 0.1071388 | ||
| S | 8 | 0.0000124 | ||
| X | 10916 | 0.0169502 | ||
| M | 153 | - | 49 | 0.0000761 |
| I | 2977 | 0.0046226 | ||
| K | 2 | 0.0000031 | ||
| L | 6 | 0.0000093 | ||
| R | 1 | 0.0000016 | ||
| T | 4734 | 0.0073509 | ||
| V | 120 | 0.0001863 | ||
| X | 10454 | 0.0162328 | ||
| F | 157 | - | 1594 | 0.0024751 |
| C | 1 | 0.0000016 | ||
| L | 71661 | 0.1112738 | ||
| S | 117 | 0.0001817 | ||
| V | 2 | 0.0000031 | ||
| X | 12130 | 0.0188352 | ||
| N | 164 | - | 38 | 0.0000590 |
| D | 5 | 0.0000078 | ||
| H | 15 | 0.0000233 | ||
| I | 35 | 0.0000543 | ||
| K | 4502 | 0.0069906 | ||
| S | 25 | 0.0000388 | ||
| T | 70 | 0.0001087 | ||
| X | 11349 | 0.0176225 | ||
| Y | 1 | 0.0000016 | ||
| L | 176 | - | 35 | 0.0000543 |
| C | 2 | 0.0000031 | ||
| F | 2010 | 0.0031211 | ||
| H | 6 | 0.0000093 | ||
| I | 9 | 0.0000140 | ||
| P | 2 | 0.0000031 | ||
| R | 2 | 0.0000031 | ||
| V | 2 | 0.0000031 | ||
| X | 13258 | 0.0205868 | ||
| G | 181 | - | 42 | 0.0000652 |
| A | 319 | 0.0004953 | ||
| E | 280 | 0.0004348 | ||
| L | 2 | 0.0000031 | ||
| R | 664 | 0.0010310 | ||
| T | 1 | 0.0000016 | ||
| V | 2172 | 0.0033726 | ||
| X | 13042 | 0.0202514 | ||
| K | 182 | - | 46 | 0.0000714 |
| E | 811 | 0.0012593 | ||
| I | 1295 | 0.0020109 | ||
| M | 2 | 0.0000031 | ||
| N | 503 | 0.0007810 | ||
| Q | 30 | 0.0000466 | ||
| R | 142 | 0.0002205 | ||
| T | 75 | 0.0001165 | ||
| X | 13109 | 0.0203554 | ||
| Q | 183 | - | 42 | 0.0000652 |
| D | 5 | 0.0000078 | ||
| E | 48339 | 0.0750599 | ||
| G | 5 | 0.0000078 | ||
| H | 257 | 0.0003991 | ||
| K | 124 | 0.0001925 | ||
| L | 62 | 0.0000963 | ||
| P | 105 | 0.0001630 | ||
| R | 240 | 0.0003727 | ||
| X | 14042 | 0.0218041 | ||
| N | 185 | - | 47 | 0.0000730 |
| D | 4494 | 0.0069782 | ||
| G | 1 | 0.0000016 | ||
| H | 2 | 0.0000031 | ||
| I | 90 | 0.0001398 | ||
| K | 107 | 0.0001661 | ||
| P | 1 | 0.0000016 | ||
| S | 217 | 0.0003370 | ||
| T | 248 | 0.0003851 | ||
| X | 12779 | 0.0198430 | ||
| Y | 387 | 0.0006009 | ||
| P | 209 | - | 68 | 0.0001056 |
| H | 33 | 0.0000512 | ||
| L | 2950 | 0.0045807 | ||
| S | 64 | 0.0000994 | ||
| T | 4 | 0.0000062 | ||
| X | 10779 | 0.0167374 | ||
| I | 210 | - | 167 | 0.0002593 |
| A | 33 | 0.0000512 | ||
| F | 32 | 0.0000497 | ||
| K | 1 | 0.0000016 | ||
| L | 6 | 0.0000093 | ||
| S | 4 | 0.0000062 | ||
| T | 79 | 0.0001227 | ||
| V | 66548 | 0.1033344 | ||
| X | 11105 | 0.0172436 | ||
| L | 212 | - | 816 | 0.0012671 |
| E | 9 | 0.0000140 | ||
| F | 56 | 0.0000870 | ||
| G | 214 | 0.0003323 | ||
| I | 103 | 0.0001599 | ||
| R | 1 | 0.0000016 | ||
| S | 1205 | 0.0018711 | ||
| X | 10640 | 0.0165216 | ||
| V | 213 | - | 1036 | 0.0016087 |
| A | 3 | 0.0000047 | ||
| D | 5 | 0.0000078 | ||
| E | 49499 | 0.0768611 | ||
| G | 577887 | 0.8973317 | ||
| I | 1 | 0.0000016 | ||
| K | 2 | 0.0000031 | ||
| L | 1 | 0.0000016 | ||
| M | 1 | 0.0000016 | ||
| N | 150 | 0.0002329 | ||
| Q | 1 | 0.0000016 | ||
| R | 164 | 0.0002547 | ||
| T | 3 | 0.0000047 | ||
| W | 49 | 0.0000761 | ||
| X | 12990 | 0.0201706 | ||
| D | 215 | - | 76 | 0.0001180 |
| A | 8 | 0.0000124 | ||
| E | 135 | 0.0002096 | ||
| G | 476 | 0.0007391 | ||
| H | 1108 | 0.0017205 | ||
| N | 47 | 0.0000730 | ||
| V | 106 | 0.0001646 | ||
| X | 10180 | 0.0158073 | ||
| Y | 274 | 0.0004255 | ||
| H | 245 | - | 114 | 0.0001770 |
| F | 2 | 0.0000031 | ||
| L | 1 | 0.0000016 | ||
| N | 4901 | 0.0076102 | ||
| P | 1 | 0.0000016 | ||
| R | 55 | 0.0000854 | ||
| X | 21564 | 0.0334842 | ||
| Y | 1162 | 0.0018043 | ||
| Y | 248 | - | 493 | 0.0007655 |
| C | 1 | 0.0000016 | ||
| D | 444 | 0.0006894 | ||
| F | 4 | 0.0000062 | ||
| H | 837 | 0.0012997 | ||
| N | 498 | 0.0007733 | ||
| S | 938 | 0.0014565 | ||
| W | 2 | 0.0000031 | ||
| X | 21608 | 0.0335525 | ||
| P | 251 | - | 30 | 0.0000466 |
| A | 1 | 0.0000016 | ||
| H | 759 | 0.0011786 | ||
| L | 1869 | 0.0029021 | ||
| R | 1 | 0.0000016 | ||
| S | 253 | 0.0003929 | ||
| T | 71 | 0.0001102 | ||
| X | 21974 | 0.0341208 | ||
| Y | 2 | 0.0000031 | ||
| G | 252 | - | 23 | 0.0000357 |
| A | 3 | 0.0000047 | ||
| D | 313 | 0.0004860 | ||
| I | 1 | 0.0000016 | ||
| S | 286 | 0.0004441 | ||
| V | 32755 | 0.0508613 | ||
| X | 23375 | 0.0362962 | ||
| D | 253 | - | 36 | 0.0000559 |
| A | 9 | 0.0000140 | ||
| E | 1 | 0.0000016 | ||
| F | 1 | 0.0000016 | ||
| G | 8435 | 0.0130977 | ||
| H | 2 | 0.0000031 | ||
| I | 1 | 0.0000016 | ||
| N | 34 | 0.0000528 | ||
| S | 2 | 0.0000031 | ||
| V | 15 | 0.0000233 | ||
| X | 23105 | 0.0358770 | ||
| Y | 340 | 0.0005279 | ||
| S | 255 | - | 31 | 0.0000481 |
| A | 1 | 0.0000016 | ||
| C | 1 | 0.0000016 | ||
| F | 4037 | 0.0062686 | ||
| I | 1 | 0.0000016 | ||
| P | 33 | 0.0000512 | ||
| T | 1 | 0.0000016 | ||
| X | 25695 | 0.0398987 | ||
| Y | 9 | 0.0000140 | ||
| S | 256 | - | 35 | 0.0000543 |
| A | 335 | 0.0005202 | ||
| D | 1 | 0.0000016 | ||
| L | 2241 | 0.0034798 | ||
| P | 168 | 0.0002609 | ||
| T | 12 | 0.0000186 | ||
| V | 1 | 0.0000016 | ||
| X | 25908 | 0.0402294 | ||
| G | 257 | - | 572 | 0.0008882 |
| C | 5 | 0.0000078 | ||
| D | 6116 | 0.0094968 | ||
| H | 2 | 0.0000031 | ||
| N | 7 | 0.0000109 | ||
| R | 18 | 0.0000280 | ||
| S | 66297 | 0.1029447 | ||
| V | 241 | 0.0003742 | ||
| X | 27152 | 0.0421611 | ||
| G | 339 | - | 26 | 0.0000404 |
| A | 12 | 0.0000186 | ||
| D | 506744 | 0.7868622 | ||
| E | 4 | 0.0000062 | ||
| H | 117224 | 0.1820231 | ||
| L | 1 | 0.0000016 | ||
| N | 131 | 0.0002034 | ||
| P | 1 | 0.0000016 | ||
| Q | 3 | 0.0000047 | ||
| R | 53 | 0.0000823 | ||
| V | 13 | 0.0000202 | ||
| X | 17412 | 0.0270370 | ||
| Y | 131 | 0.0002034 | ||
| R | 346 | - | 586 | 0.0009099 |
| A | 9 | 0.0000140 | ||
| E | 60 | 0.0000932 | ||
| G | 13 | 0.0000202 | ||
| I | 2627 | 0.0040792 | ||
| K | 219 | 0.0003401 | ||
| S | 3741 | 0.0058090 | ||
| T | 392599 | 0.6096201 | ||
| V | 2 | 0.0000031 | ||
| X | 21227 | 0.0329609 | ||
| K | 356 | - | 12 | 0.0000186 |
| E | 6 | 0.0000093 | ||
| I | 2 | 0.0000031 | ||
| M | 4 | 0.0000062 | ||
| N | 8 | 0.0000124 | ||
| Q | 3 | 0.0000047 | ||
| R | 48 | 0.0000745 | ||
| T | 35690 | 0.0554187 | ||
| X | 23030 | 0.0357605 | ||
| L | 368 | - | 14 | 0.0000217 |
| G | 1 | 0.0000016 | ||
| I | 46711 | 0.0725319 | ||
| T | 1 | 0.0000016 | ||
| V | 2 | 0.0000031 | ||
| X | 23150 | 0.0359469 | ||
| S | 371 | - | 16 | 0.0000248 |
| C | 1 | 0.0000016 | ||
| D | 2 | 0.0000031 | ||
| F | 615040 | 0.9550222 | ||
| G | 1 | 0.0000016 | ||
| I | 2 | 0.0000031 | ||
| L | 115 | 0.0001786 | ||
| T | 1 | 0.0000016 | ||
| X | 26643 | 0.0413707 | ||
| Y | 1 | 0.0000016 | ||
| S | 373 | - | 15 | 0.0000233 |
| D | 2 | 0.0000031 | ||
| P | 618661 | 0.9606448 | ||
| Q | 2 | 0.0000031 | ||
| T | 1 | 0.0000016 | ||
| X | 24154 | 0.0375059 | ||
| S | 375 | - | 32 | 0.0000497 |
| A | 106 | 0.0001646 | ||
| F | 616395 | 0.9571262 | ||
| I | 2 | 0.0000031 | ||
| X | 25753 | 0.0399888 | ||
| Y | 1 | 0.0000016 | ||
| T | 376 | - | 138 | 0.0002143 |
| A | 613396 | 0.9524694 | ||
| G | 1 | 0.0000016 | ||
| V | 10 | 0.0000155 | ||
| X | 28789 | 0.0447030 | ||
| D | 405 | - | 33 | 0.0000512 |
| H | 2 | 0.0000031 | ||
| K | 1 | 0.0000016 | ||
| N | 619602 | 0.9621059 | ||
| S | 4 | 0.0000062 | ||
| T | 1 | 0.0000016 | ||
| X | 21805 | 0.0338584 | ||
| Y | 1 | 0.0000016 | ||
| R | 408 | - | 32 | 0.0000497 |
| G | 26 | 0.0000404 | ||
| I | 6 | 0.0000093 | ||
| N | 29 | 0.0000450 | ||
| S | 600145 | 0.9318935 | ||
| T | 1 | 0.0000016 | ||
| W | 1 | 0.0000016 | ||
| X | 30971 | 0.0480912 | ||
| K | 417 | - | 27 | 0.0000419 |
| D | 1 | 0.0000016 | ||
| H | 2 | 0.0000031 | ||
| I | 7 | 0.0000109 | ||
| N | 593855 | 0.9221265 | ||
| S | 17 | 0.0000264 | ||
| T | 61 | 0.0000947 | ||
| X | 40781 | 0.0633239 | ||
| Y | 3 | 0.0000047 | ||
| N | 440 | - | 17 | 0.0000264 |
| E | 4 | 0.0000062 | ||
| K | 605059 | 0.9395239 | ||
| R | 43 | 0.0000668 | ||
| X | 28115 | 0.0436564 | ||
| K | 444 | - | 16 | 0.0000248 |
| A | 13 | 0.0000202 | ||
| E | 4 | 0.0000062 | ||
| G | 2 | 0.0000031 | ||
| M | 3311 | 0.0051413 | ||
| N | 9922 | 0.0154067 | ||
| P | 1 | 0.0000016 | ||
| Q | 117 | 0.0001817 | ||
| R | 8859 | 0.0137561 | ||
| S | 17 | 0.0000264 | ||
| T | 292571 | 0.4542986 | ||
| X | 26146 | 0.0405990 | ||
| V | 445 | - | 18 | 0.0000280 |
| A | 8111 | 0.0125946 | ||
| D | 1 | 0.0000016 | ||
| F | 256 | 0.0003975 | ||
| G | 30 | 0.0000466 | ||
| H | 5 | 0.0000078 | ||
| I | 51 | 0.0000792 | ||
| L | 37 | 0.0000575 | ||
| P | 46802 | 0.0726732 | ||
| Q | 1 | 0.0000016 | ||
| S | 9 | 0.0000140 | ||
| T | 2 | 0.0000031 | ||
| X | 25675 | 0.0398676 | ||
| G | 446 | - | 15 | 0.0000233 |
| A | 3 | 0.0000047 | ||
| C | 1 | 0.0000016 | ||
| D | 1952 | 0.0030310 | ||
| I | 9 | 0.0000140 | ||
| N | 12 | 0.0000186 | ||
| R | 38 | 0.0000590 | ||
| S | 117631 | 0.1826551 | ||
| T | 26 | 0.0000404 | ||
| V | 105 | 0.0001630 | ||
| X | 26311 | 0.0408552 | ||
| N | 450 | - | 32 | 0.0000497 |
| D | 12684 | 0.0196955 | ||
| I | 2 | 0.0000031 | ||
| K | 2 | 0.0000031 | ||
| M | 2 | 0.0000031 | ||
| Q | 1 | 0.0000016 | ||
| R | 2 | 0.0000031 | ||
| S | 1 | 0.0000016 | ||
| V | 1 | 0.0000016 | ||
| X | 24992 | 0.0388071 | ||
| Y | 2 | 0.0000031 | ||
| L | 452 | - | 39 | 0.0000606 |
| K | 6 | 0.0000093 | ||
| M | 5228 | 0.0081179 | ||
| Q | 137 | 0.0002127 | ||
| R | 514936 | 0.7995826 | ||
| V | 4 | 0.0000062 | ||
| W | 3 | 0.0000047 | ||
| X | 27041 | 0.0419887 | ||
| N | 460 | - | 37 | 0.0000575 |
| D | 1 | 0.0000016 | ||
| H | 154 | 0.0002391 | ||
| I | 40 | 0.0000621 | ||
| K | 404078 | 0.6274445 | ||
| Q | 1 | 0.0000016 | ||
| R | 1 | 0.0000016 | ||
| S | 302 | 0.0004689 | ||
| T | 15 | 0.0000233 | ||
| X | 28824 | 0.0447573 | ||
| Y | 193 | 0.0002997 | ||
| S | 477 | - | 64 | 0.0000994 |
| A | 1 | 0.0000016 | ||
| D | 19 | 0.0000295 | ||
| G | 1 | 0.0000016 | ||
| H | 1 | 0.0000016 | ||
| I | 2 | 0.0000031 | ||
| K | 51 | 0.0000792 | ||
| N | 622993 | 0.9673714 | ||
| X | 17966 | 0.0278973 | ||
| Y | 1 | 0.0000016 | ||
| T | 478 | - | 64 | 0.0000994 |
| D | 1 | 0.0000016 | ||
| E | 168 | 0.0002609 | ||
| I | 168 | 0.0002609 | ||
| K | 622022 | 0.9658637 | ||
| N | 394 | 0.0006118 | ||
| Q | 24 | 0.0000373 | ||
| R | 1047 | 0.0016258 | ||
| X | 18151 | 0.0281845 | ||
| E | 484 | - | 78 | 0.0001211 |
| A | 619361 | 0.9617317 | ||
| D | 2 | 0.0000031 | ||
| G | 6 | 0.0000093 | ||
| K | 13 | 0.0000202 | ||
| P | 16 | 0.0000248 | ||
| R | 4426 | 0.0068726 | ||
| S | 107 | 0.0001661 | ||
| T | 73 | 0.0001134 | ||
| V | 529 | 0.0008214 | ||
| X | 17256 | 0.0267948 | ||
| F | 486 | - | 81 | 0.0001258 |
| A | 1610 | 0.0025000 | ||
| D | 1 | 0.0000016 | ||
| E | 2 | 0.0000031 | ||
| G | 3 | 0.0000047 | ||
| H | 2 | 0.0000031 | ||
| I | 4738 | 0.0073571 | ||
| L | 45 | 0.0000699 | ||
| P | 27505 | 0.0427092 | ||
| S | 50732 | 0.0787757 | ||
| V | 497752 | 0.7728996 | ||
| X | 17770 | 0.0275929 | ||
| Y | 1 | 0.0000016 | ||
| F | 490 | - | 88 | 0.0001366 |
| A | 20 | 0.0000311 | ||
| I | 9 | 0.0000140 | ||
| L | 64 | 0.0000994 | ||
| N | 1 | 0.0000016 | ||
| P | 173 | 0.0002686 | ||
| S | 88817 | 0.1379133 | ||
| V | 98 | 0.0001522 | ||
| X | 18514 | 0.0287482 | ||
| Y | 12 | 0.0000186 | ||
| S | 494 | - | 97 | 0.0001506 |
| A | 2 | 0.0000031 | ||
| L | 9 | 0.0000140 | ||
| P | 2323 | 0.0036071 | ||
| X | 17348 | 0.0269376 | ||
| Q | 498 | - | 101 | 0.0001568 |
| H | 3 | 0.0000047 | ||
| L | 3 | 0.0000047 | ||
| P | 1 | 0.0000016 | ||
| R | 620579 | 0.9636230 | ||
| X | 21360 | 0.0331674 | ||
| N | 501 | - | 126 | 0.0001957 |
| A | 1 | 0.0000016 | ||
| F | 2 | 0.0000031 | ||
| H | 1 | 0.0000016 | ||
| I | 1 | 0.0000016 | ||
| S | 1 | 0.0000016 | ||
| X | 20156 | 0.0312978 | ||
| Y | 622584 | 0.9667363 | ||
| Y | 505 | - | 96 | 0.0001491 |
| H | 622822 | 0.9671059 | ||
| K | 1 | 0.0000016 | ||
| N | 1 | 0.0000016 | ||
| Q | 2 | 0.0000031 | ||
| R | 1 | 0.0000016 | ||
| X | 18903 | 0.0293522 | ||
| T | 547 | - | 2 | 0.0000031 |
| A | 11 | 0.0000171 | ||
| I | 1311 | 0.0020357 | ||
| K | 1433 | 0.0022251 | ||
| R | 40 | 0.0000621 | ||
| S | 4 | 0.0000062 | ||
| X | 3999 | 0.0062096 | ||
| Q | 613 | E | 59 | 0.0000916 |
| H | 2390 | 0.0037111 | ||
| K | 1 | 0.0000016 | ||
| L | 3 | 0.0000047 | ||
| R | 4 | 0.0000062 | ||
| X | 1035 | 0.0016071 | ||
| E | 619 | A | 26 | 0.0000404 |
| D | 32 | 0.0000497 | ||
| G | 4 | 0.0000062 | ||
| H | 1 | 0.0000016 | ||
| K | 223 | 0.0003463 | ||
| Q | 5593 | 0.0086847 | ||
| V | 8 | 0.0000124 | ||
| X | 1101 | 0.0017096 | ||
| H | 655 | - | 2 | 0.0000031 |
| F | 22 | 0.0000342 | ||
| N | 1 | 0.0000016 | ||
| X | 1619 | 0.0025140 | ||
| Y | 642003 | 0.9968898 | ||
| N | 658 | - | 1 | 0.0000016 |
| D | 6 | 0.0000093 | ||
| I | 5 | 0.0000078 | ||
| K | 19 | 0.0000295 | ||
| S | 6930 | 0.0107608 | ||
| T | 1 | 0.0000016 | ||
| X | 1265 | 0.0019643 | ||
| Y | 3 | 0.0000047 | ||
| I | 666 | - | 1 | 0.0000016 |
| V | 8930 | 0.0138663 | ||
| X | 1160 | 0.0018012 | ||
| Q | 677 | - | 1 | 0.0000016 |
| E | 4 | 0.0000062 | ||
| H | 2113 | 0.0032810 | ||
| K | 9 | 0.0000140 | ||
| L | 16 | 0.0000248 | ||
| P | 2 | 0.0000031 | ||
| R | 60 | 0.0000932 | ||
| X | 968 | 0.0015031 | ||
| N | 679 | - | 4 | 0.0000062 |
| K | 641456 | 0.9960404 | ||
| M | 2 | 0.0000031 | ||
| Q | 2 | 0.0000031 | ||
| R | 38 | 0.0000590 | ||
| T | 1 | 0.0000016 | ||
| X | 1557 | 0.0024177 | ||
| P | 681 | - | 1 | 0.0000016 |
| H | 640108 | 0.9939473 | ||
| L | 5 | 0.0000078 | ||
| N | 14 | 0.0000217 | ||
| Q | 6 | 0.0000093 | ||
| R | 92 | 0.0001429 | ||
| X | 2134 | 0.0033136 | ||
| Y | 97 | 0.0001506 | ||
| A | 688 | - | 4 | 0.0000062 |
| D | 23 | 0.0000357 | ||
| E | 1 | 0.0000016 | ||
| G | 18 | 0.0000280 | ||
| S | 97 | 0.0001506 | ||
| T | 187 | 0.0002904 | ||
| V | 2441 | 0.0037903 | ||
| X | 9097 | 0.0141256 | ||
| N | 764 | - | 4 | 0.0000062 |
| E | 1 | 0.0000016 | ||
| I | 3 | 0.0000047 | ||
| K | 627391 | 0.9742006 | ||
| P | 1 | 0.0000016 | ||
| R | 168 | 0.0002609 | ||
| T | 1 | 0.0000016 | ||
| X | 14200 | 0.0220495 | ||
| D | 796 | - | 8 | 0.0000124 |
| C | 12 | 0.0000186 | ||
| F | 2 | 0.0000031 | ||
| H | 102 | 0.0001584 | ||
| I | 1 | 0.0000016 | ||
| V | 1 | 0.0000016 | ||
| X | 5487 | 0.0085201 | ||
| Y | 637058 | 0.9892113 | ||
| T | 883 | - | 2 | 0.0000031 |
| A | 2 | 0.0000031 | ||
| I | 4617 | 0.0071692 | ||
| M | 6 | 0.0000093 | ||
| S | 6 | 0.0000093 | ||
| V | 1 | 0.0000016 | ||
| X | 3568 | 0.0055403 | ||
| Q | 954 | - | 4 | 0.0000062 |
| H | 640037 | 0.9938370 | ||
| L | 14 | 0.0000217 | ||
| N | 3 | 0.0000047 | ||
| R | 6 | 0.0000093 | ||
| X | 3635 | 0.0056444 | ||
| Y | 119 | 0.0001848 | ||
| N | 969 | - | 2 | 0.0000031 |
| E | 2 | 0.0000031 | ||
| K | 641146 | 0.9955590 | ||
| R | 15 | 0.0000233 | ||
| T | 1 | 0.0000016 | ||
| X | 2645 | 0.0041071 | ||
| A | 1020 | - | 5 | 0.0000078 |
| F | 9 | 0.0000140 | ||
| G | 7 | 0.0000109 | ||
| S | 21012 | 0.0326270 | ||
| T | 109 | 0.0001693 | ||
| V | 409 | 0.0006351 | ||
| X | 3003 | 0.0046630 | ||
| Y | 1 | 0.0000016 | ||
| P | 1162 | A | 4 | 0.0000062 |
| L | 1412 | 0.0021925 | ||
| Q | 12 | 0.0000186 | ||
| R | 28 | 0.0000435 | ||
| S | 2257 | 0.0035046 | ||
| T | 21 | 0.0000326 | ||
| X | 2142 | 0.0033261 | ||
| D | 1199 | - | 15 | 0.0000233 |
| A | 3 | 0.0000047 | ||
| E | 5 | 0.0000078 | ||
| G | 18 | 0.0000280 | ||
| H | 116 | 0.0001801 | ||
| N | 2129 | 0.0033059 | ||
| V | 3 | 0.0000047 | ||
| X | 2722 | 0.0042267 | ||
| Y | 20 | 0.0000311 | ||
| C | 1243 | - | 46 | 0.0000714 |
| F | 3599 | 0.0055885 | ||
| G | 2 | 0.0000031 | ||
| R | 5 | 0.0000078 | ||
| S | 4 | 0.0000062 | ||
| X | 2364 | 0.0036708 | ||
| Y | 3 | 0.0000047 | ||
| P | 1263 | - | 1 | 0.0000016 |
| L | 915 | 0.0014208 | ||
| Q | 2192 | 0.0034037 | ||
| R | 86 | 0.0001335 | ||
| S | 136 | 0.0002112 | ||
| T | 25 | 0.0000388 | ||
| X | 1656 | 0.0025714 | ||
| V | 1264 | - | 1 | 0.0000016 |
| A | 20 | 0.0000311 | ||
| E | 3 | 0.0000047 | ||
| L | 2448 | 0.0038012 | ||
| M | 58 | 0.0000901 | ||
| X | 1622 | 0.0025186 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Friesland | 3 | 776 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 1 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 4 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 1 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484V,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 2 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Utrecht | 1 | 650 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 2 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 3 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Limburg | 1 | 555 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Utrecht | 2 | 650 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 2 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,K182E,V213G,H245X,Y248X,P251X,G252X,D253X,S255X,S256X,G257X,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 2 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,H245X,Y248X,P251X,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 1 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Gelderland | 1 | 1105 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Limburg | 1 | 555 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 1 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69X,V70X,T76X,V83X,G142X,Y144X,Y145X,H146X,K147X,K150X,W152X,M153X,F157X,N164X,L176X,G181X,K182X,Q183X,N185X,P209X,I210X,L212X,V213X,D215X,H245X,Y248X,P251X,G252X,D253X,S255X,S256X,G257X,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Noord-Holland | 1 | 1684 | 8172 | Europe 239246 | |
| L | 5 | - | L5-,T19I,L24-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Netherlands_Flevoland | 1 | 246 | 8172 | Europe 239246 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Japan_Ibaraki | 4 | 1098 | 70905 | Asia 117898 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 13 | 47421 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California_Los-Angeles | 2 | 2716 | 47421 | 196395 | North-America 238265 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Centre-Val-de-Loire_Eure-et-Loir | 1 | 60 | 1959 | 28217 | Europe 239246 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,K417X,N440X,K444X,V445X,G446X,N450X,L452X,N460X,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 1 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,K417X,N440X,K444X,V445X,G446X,N450X,L452X,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Ohio | 1 | 2540 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417X,N440X,K444X,V445X,G446X,N450X,L452X,N460X,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 1 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 12 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Ontario | 36 | 18146 | 34495 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444M,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 1 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 2 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Florida | 4 | 5105 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-Jersey | 7 | 6334 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_West-Virginia | 4 | 406 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Connecticut | 5 | 3030 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Pennsylvania | 10 | 5258 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_North-Carolina | 7 | 8396 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Occitanie_Hautes-Pyrenees | 2 | 71 | 2191 | 28217 | Europe 239246 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-Hampshire | 1 | 151 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,H245X,Y248X,P251X,G252X,D253X,S255X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California_Los-Angeles | 1 | 2716 | 47421 | 196395 | North-America 238265 |
| L | 5 | F | L5F,H69-,V70-,G142D,Y144-,Y145-,L212I,G339D,R346K,S371L,S373P,K417N,N440K,G446S,S477N,T478K,E484A,Q498R,N501Y,Y505H,T547K,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Auvergne-Rhone-Alpes | 1 | 6708 | 28217 | Europe 239246 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 16 | 47421 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,Q677H,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Brazil_Pernambuco_Recife | 1 | 381 | 683 | 10414 | South-America 22489 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Australia_New-South-Wales_Sydney | 3 | 6731 | 6731 | 18138 | Oceania 22776 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovakia_Bratislava | 1 | 99 | 373 | Europe 239246 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142X,Y144X,Y145X,H146X,K147X,K150X,W152X,M153X,F157X,N164X,L176X,V213G,Y248H,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Michigan | 1 | 4906 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,N164X,L176X,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Michigan | 1 | 4906 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Michigan | 22 | 4906 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,K417X,N440X,K444X,V445X,G446X,N450X,L452X,N460X,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764X,D796Y,Q954H,N969K,D614G | Brazil_Pernambuco_Recife | 1 | 381 | 683 | 10414 | South-America 22489 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Slovakia_Kosice | 1 | 29 | 373 | Europe 239246 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Nevada | 5 | 3297 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York | 20 | 18059 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 1 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Illinois | 1 | 8125 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,D253G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 1 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,H245X,Y248X,P251X,G252X,D253X,S255X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Canada_Ontario | 8 | 18146 | 34495 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Texas | 14 | 14291 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Michigan | 13 | 4906 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_South-Carolina | 5 | 1466 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,D253G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | United-Kingdom_England_QEUH | 2 | 7860 | 41101 | 49720 | Europe 239246 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Georgia | 3 | 3101 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_South-Carolina | 3 | 1466 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York | 9 | 18059 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,H245X,Y248X,P251X,G252X,D253X,S255X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440X,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,A688X,N764K,D796Y,Q954H,N969K,D614G | Indonesia_Jakarta_Jakarta-Timur | 1 | 225 | 1876 | 4420 | Asia 117898 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,Y248S,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Indonesia_Jakarta_Jakarta-Utara | 1 | 302 | 1876 | 4420 | Asia 117898 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Florida | 9 | 5105 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Virginia | 7 | 5231 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_South-Carolina | 3 | 1466 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486S,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Tennessee | 1 | 944 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Maryland | 6 | 4795 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_District-of-Columbia | 1 | 1081 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,N164X,L176X,N185X,P209X,I210X,L212X,V213X,D215X,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440X,K444X,V445X,G446X,N450X,L452X,N460X,S477X,T478X,E484X,F486X,F490X,S494X,Q498X,N501X,Y505X,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | France_Bretagne | 1 | 1578 | 28217 | Europe 239246 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G257-,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Louisiana | 1 | 1371 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,K182I,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Louisiana | 1 | 1371 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Minnesota | 1 | 2576 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_North-Carolina | 16 | 8396 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Georgia | 10 | 3101 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Virginia | 9 | 5231 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,N185D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-Jersey | 1 | 6334 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Colorado | 6 | 7016 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Virginia | 1 | 5231 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | South-Korea | 23 | 15181 | Asia 117898 | ||
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Kansas | 4 | 937 | 196395 | North-America 238265 | |
| L | 5 | F | T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,K356X,L368X,S371X,S373X,S375X,T376X,D405N,R408S,K417N,N440X,K444X,V445X,G446X,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | Guatemala_Zacapa_Zacapa | 1 | 45 | 63 | 1297 | North-America 238265 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 60 | 47421 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 12 | 47421 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Washington | 2 | 5836 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_North-Dakota | 12 | 407 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408X,K417X,N440X,K444X,V445X,G446X,N450X,L452X,N460X,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764X,D796Y,Q954H,N969K,D614G | South-Africa_Gauteng | 1 | 303 | 1207 | Africa 3332 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Indiana | 1 | 1871 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Arizona | 12 | 4646 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182I,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 6 | 47421 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_California | 53 | 47421 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,H245X,Y248X,P251X,G252X,D253X,S255X,S256X,G257X,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_New-York_Monroe | 1 | 951 | 18059 | 196395 | North-America 238265 |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_Virginia | 5 | 5231 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_North-Carolina | 26 | 8396 | 196395 | North-America 238265 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145Q,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D614G | USA_District-of-Columbia | 1 | 1081 | 196395 | North-America 238265 |
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