COVID-19 Viral Genome Analysis Pipeline
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Tables of mutating sites in Spike, updated daily
Last update: Nov 5, 2025
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Collection dates: 2025-08-07 - 2025-11-03
Table 1A. Table of sites with common mutations, found with a frequency of >0.003. (Within the ACE2 contact region, the frequency threshold for inclusion is lower, >0.001.)
Note: The mutation D614G is not included in this summary; it is now the globally dominant form and can be readily tracked using many other tools at this site.
# of seqs: 40,689
| ori | pos | mut | count | frequency |
|---|---|---|---|---|
| L | 5 | - | 1 | 0.0000246 |
| F | 304 | 0.0074713 | ||
| X | 1080 | 0.0265428 | ||
| T | 19 | - | 1 | 0.0000246 |
| A | 3 | 0.0000737 | ||
| F | 48 | 0.0011797 | ||
| I | 35956 | 0.8836786 | ||
| L | 6 | 0.0001475 | ||
| P | 1 | 0.0000246 | ||
| R | 1 | 0.0000246 | ||
| V | 99 | 0.0024331 | ||
| X | 3884 | 0.0954558 | ||
| R | 21 | - | 106 | 0.0026051 |
| F | 34 | 0.0008356 | ||
| I | 16 | 0.0003932 | ||
| L | 7 | 0.0001720 | ||
| N | 10 | 0.0002458 | ||
| S | 2 | 0.0000492 | ||
| T | 35533 | 0.8732827 | ||
| X | 4314 | 0.1060237 | ||
| T | 22 | - | 4 | 0.0000983 |
| F | 1 | 0.0000246 | ||
| I | 5 | 0.0001229 | ||
| L | 5 | 0.0001229 | ||
| N | 35202 | 0.8651478 | ||
| X | 3297 | 0.0810293 | ||
| L | 24 | - | 35697 | 0.8773133 |
| I | 3 | 0.0000737 | ||
| N | 38 | 0.0009339 | ||
| S | 254 | 0.0062425 | ||
| T | 8 | 0.0001966 | ||
| X | 4264 | 0.1047949 | ||
| P | 25 | - | 35712 | 0.8776819 |
| I | 1 | 0.0000246 | ||
| N | 179 | 0.0043992 | ||
| Q | 38 | 0.0009339 | ||
| S | 13 | 0.0003195 | ||
| T | 10 | 0.0002458 | ||
| X | 4409 | 0.1083585 | ||
| P | 26 | - | 35765 | 0.8789845 |
| L | 41 | 0.0010076 | ||
| N | 20 | 0.0004915 | ||
| Q | 273 | 0.0067094 | ||
| T | 1 | 0.0000246 | ||
| X | 4216 | 0.1036152 | ||
| A | 27 | - | 28 | 0.0006881 |
| Q | 25 | 0.0006144 | ||
| S | 37343 | 0.9177665 | ||
| T | 2 | 0.0000492 | ||
| X | 2830 | 0.0695520 | ||
| S | 31 | - | 1953 | 0.0479982 |
| F | 36 | 0.0008848 | ||
| H | 1 | 0.0000246 | ||
| L | 22 | 0.0005407 | ||
| P | 30028 | 0.7379882 | ||
| T | 1 | 0.0000246 | ||
| X | 507 | 0.0124604 | ||
| S | 50 | L | 39100 | 0.9609477 |
| X | 1414 | 0.0347514 | ||
| F | 59 | - | 8 | 0.0001966 |
| L | 7 | 0.0001720 | ||
| S | 7864 | 0.1932709 | ||
| X | 1355 | 0.0333014 | ||
| A | 67 | S | 23 | 0.0005653 |
| V | 211 | 0.0051857 | ||
| X | 1323 | 0.0325149 | ||
| H | 69 | - | 38058 | 0.9353388 |
| A | 1 | 0.0000246 | ||
| C | 1 | 0.0000246 | ||
| L | 5 | 0.0001229 | ||
| P | 2 | 0.0000492 | ||
| S | 6 | 0.0001475 | ||
| X | 2578 | 0.0633586 | ||
| Y | 4 | 0.0000983 | ||
| V | 70 | - | 38063 | 0.9354617 |
| F | 1 | 0.0000246 | ||
| I | 100 | 0.0024577 | ||
| X | 2466 | 0.0606061 | ||
| T | 95 | - | 1 | 0.0000246 |
| A | 3 | 0.0000737 | ||
| I | 130 | 0.0031950 | ||
| N | 1 | 0.0000246 | ||
| S | 1 | 0.0000246 | ||
| X | 1741 | 0.0427880 | ||
| E | 96 | - | 1 | 0.0000246 |
| A | 2 | 0.0000492 | ||
| D | 272 | 0.0066849 | ||
| G | 8 | 0.0001966 | ||
| K | 2 | 0.0000492 | ||
| V | 1 | 0.0000246 | ||
| X | 1310 | 0.0321954 | ||
| I | 101 | - | 1 | 0.0000246 |
| M | 13 | 0.0003195 | ||
| T | 642 | 0.0157782 | ||
| V | 2 | 0.0000492 | ||
| X | 1342 | 0.0329819 | ||
| V | 127 | F | 40175 | 0.9873676 |
| L | 44 | 0.0010814 | ||
| X | 378 | 0.0092900 | ||
| G | 142 | - | 40 | 0.0009831 |
| D | 39806 | 0.9782988 | ||
| H | 1 | 0.0000246 | ||
| N | 2 | 0.0000492 | ||
| X | 604 | 0.0148443 | ||
| Y | 4 | 0.0000983 | ||
| Y | 144 | - | 39482 | 0.9703360 |
| C | 1 | 0.0000246 | ||
| H | 3 | 0.0000737 | ||
| N | 16 | 0.0003932 | ||
| V | 1 | 0.0000246 | ||
| X | 943 | 0.0231758 | ||
| H | 146 | - | 147 | 0.0036128 |
| K | 1 | 0.0000246 | ||
| Q | 63 | 0.0015483 | ||
| X | 302 | 0.0074222 | ||
| Y | 2 | 0.0000492 | ||
| K | 147 | - | 36 | 0.0008848 |
| E | 51 | 0.0012534 | ||
| I | 21 | 0.0005161 | ||
| N | 59 | 0.0014500 | ||
| Q | 3 | 0.0000737 | ||
| R | 12 | 0.0002949 | ||
| T | 5 | 0.0001229 | ||
| V | 1 | 0.0000246 | ||
| X | 307 | 0.0075450 | ||
| N | 148 | - | 1 | 0.0000246 |
| D | 19 | 0.0004670 | ||
| H | 11 | 0.0002703 | ||
| I | 2 | 0.0000492 | ||
| K | 1 | 0.0000246 | ||
| S | 36 | 0.0008848 | ||
| T | 47 | 0.0011551 | ||
| X | 312 | 0.0076679 | ||
| Y | 12 | 0.0002949 | ||
| K | 150 | - | 1 | 0.0000246 |
| E | 68 | 0.0016712 | ||
| G | 6 | 0.0001475 | ||
| I | 56 | 0.0013763 | ||
| N | 75 | 0.0018433 | ||
| Q | 3 | 0.0000737 | ||
| R | 26 | 0.0006390 | ||
| T | 3 | 0.0000737 | ||
| X | 301 | 0.0073976 | ||
| F | 157 | A | 18 | 0.0004424 |
| L | 132 | 0.0032441 | ||
| P | 4 | 0.0000983 | ||
| S | 39124 | 0.9615375 | ||
| V | 1 | 0.0000246 | ||
| X | 1326 | 0.0325887 | ||
| R | 158 | E | 2 | 0.0000492 |
| G | 39239 | 0.9643638 | ||
| S | 1 | 0.0000246 | ||
| V | 4 | 0.0000983 | ||
| X | 1196 | 0.0293937 | ||
| L | 176 | F | 143 | 0.0035145 |
| I | 4 | 0.0000983 | ||
| X | 1726 | 0.0424193 | ||
| K | 182 | - | 2 | 0.0000492 |
| E | 1 | 0.0000246 | ||
| G | 6 | 0.0001475 | ||
| I | 12 | 0.0002949 | ||
| N | 35 | 0.0008602 | ||
| R | 30015 | 0.7376687 | ||
| T | 7 | 0.0001720 | ||
| X | 464 | 0.0114036 | ||
| G | 184 | - | 7 | 0.0001720 |
| A | 32 | 0.0007865 | ||
| I | 2 | 0.0000492 | ||
| R | 4 | 0.0000983 | ||
| S | 7921 | 0.1946718 | ||
| V | 10 | 0.0002458 | ||
| X | 410 | 0.0100764 | ||
| F | 186 | - | 31 | 0.0007619 |
| C | 2 | 0.0000492 | ||
| L | 1414 | 0.0347514 | ||
| S | 4 | 0.0000983 | ||
| V | 2 | 0.0000492 | ||
| X | 407 | 0.0100027 | ||
| R | 190 | I | 1 | 0.0000246 |
| K | 5 | 0.0001229 | ||
| M | 2 | 0.0000492 | ||
| S | 31515 | 0.7745337 | ||
| T | 6 | 0.0001475 | ||
| X | 426 | 0.0104697 | ||
| N | 211 | - | 38384 | 0.9433508 |
| G | 32 | 0.0007865 | ||
| I | 20 | 0.0004915 | ||
| R | 1 | 0.0000246 | ||
| T | 11 | 0.0002703 | ||
| X | 1551 | 0.0381184 | ||
| L | 212 | - | 32 | 0.0007865 |
| G | 20 | 0.0004915 | ||
| I | 38403 | 0.9438177 | ||
| R | 1 | 0.0000246 | ||
| W | 1 | 0.0000246 | ||
| X | 1064 | 0.0261496 | ||
| V | 213 | - | 56 | 0.0013763 |
| E | 15 | 0.0003687 | ||
| G | 40234 | 0.9888176 | ||
| I | 1 | 0.0000246 | ||
| X | 334 | 0.0082086 | ||
| L | 216 | F | 40296 | 0.9903414 |
| V | 2 | 0.0000492 | ||
| X | 327 | 0.0080366 | ||
| G | 219 | C | 2 | 0.0000492 |
| D | 63 | 0.0015483 | ||
| S | 378 | 0.0092900 | ||
| X | 318 | 0.0078154 | ||
| L | 244 | - | 50 | 0.0012288 |
| F | 1 | 0.0000246 | ||
| N | 1 | 0.0000246 | ||
| S | 146 | 0.0035882 | ||
| X | 1114 | 0.0273784 | ||
| H | 245 | - | 17 | 0.0004178 |
| D | 1 | 0.0000246 | ||
| N | 39513 | 0.9710978 | ||
| X | 1107 | 0.0272064 | ||
| Y | 3 | 0.0000737 | ||
| A | 263 | - | 1 | 0.0000246 |
| E | 2 | 0.0000492 | ||
| G | 4 | 0.0000983 | ||
| S | 151 | 0.0037111 | ||
| T | 12 | 0.0002949 | ||
| V | 113 | 0.0027772 | ||
| X | 1324 | 0.0325395 | ||
| A | 264 | - | 1 | 0.0000246 |
| D | 39279 | 0.9653469 | ||
| G | 3 | 0.0000737 | ||
| H | 1 | 0.0000246 | ||
| X | 1337 | 0.0328590 | ||
| Y | 2 | 0.0000492 | ||
| I | 332 | V | 39636 | 0.9741208 |
| X | 970 | 0.0238394 | ||
| L | 335 | F | 326 | 0.0080120 |
| S | 4 | 0.0000983 | ||
| X | 966 | 0.0237411 | ||
| G | 339 | D | 3 | 0.0000737 |
| H | 39542 | 0.9718106 | ||
| L | 1 | 0.0000246 | ||
| N | 2 | 0.0000492 | ||
| R | 5 | 0.0001229 | ||
| X | 1060 | 0.0260513 | ||
| Y | 42 | 0.0010322 | ||
| R | 346 | - | 74 | 0.0018187 |
| I | 12 | 0.0002949 | ||
| K | 58 | 0.0014254 | ||
| S | 1 | 0.0000246 | ||
| T | 30958 | 0.7608445 | ||
| X | 1111 | 0.0273047 | ||
| K | 356 | M | 9 | 0.0002212 |
| T | 39594 | 0.9730885 | ||
| X | 1019 | 0.0250436 | ||
| S | 371 | F | 39616 | 0.9736292 |
| X | 1045 | 0.0256826 | ||
| Y | 2 | 0.0000492 | ||
| S | 373 | P | 39724 | 0.9762835 |
| X | 950 | 0.0233478 | ||
| S | 375 | - | 2 | 0.0000492 |
| A | 3 | 0.0000737 | ||
| F | 39190 | 0.9631596 | ||
| X | 1328 | 0.0326378 | ||
| T | 376 | - | 4 | 0.0000983 |
| A | 38223 | 0.9393939 | ||
| N | 597 | 0.0146723 | ||
| S | 231 | 0.0056772 | ||
| V | 4 | 0.0000983 | ||
| X | 1415 | 0.0347760 | ||
| R | 403 | K | 36653 | 0.9008086 |
| X | 3723 | 0.0914989 | ||
| D | 405 | K | 1 | 0.0000246 |
| N | 39517 | 0.9711961 | ||
| X | 1076 | 0.0264445 | ||
| R | 408 | G | 1 | 0.0000246 |
| N | 2 | 0.0000492 | ||
| S | 39191 | 0.9631842 | ||
| X | 1325 | 0.0325641 | ||
| K | 417 | I | 4 | 0.0000983 |
| N | 38840 | 0.9545577 | ||
| S | 1 | 0.0000246 | ||
| T | 61 | 0.0014992 | ||
| X | 1537 | 0.0377743 | ||
| A | 435 | S | 8129 | 0.1997837 |
| X | 2624 | 0.0644892 | ||
| N | 440 | K | 38218 | 0.9392711 |
| R | 159 | 0.0039077 | ||
| X | 2239 | 0.0550272 | ||
| L | 441 | F | 10 | 0.0002458 |
| I | 935 | 0.0229792 | ||
| Q | 1 | 0.0000246 | ||
| R | 633 | 0.0155570 | ||
| V | 11 | 0.0002703 | ||
| X | 2224 | 0.0546585 | ||
| K | 444 | R | 27616 | 0.6787092 |
| S | 7 | 0.0001720 | ||
| T | 2 | 0.0000492 | ||
| X | 2545 | 0.0625476 | ||
| V | 445 | A | 42 | 0.0010322 |
| H | 7661 | 0.1882818 | ||
| L | 6 | 0.0001475 | ||
| P | 1684 | 0.0413871 | ||
| Q | 1 | 0.0000246 | ||
| R | 28366 | 0.6971417 | ||
| X | 2840 | 0.0697977 | ||
| Y | 5 | 0.0001229 | ||
| G | 446 | - | 2 | 0.0000492 |
| D | 40 | 0.0009831 | ||
| I | 2 | 0.0000492 | ||
| N | 27 | 0.0006636 | ||
| S | 37724 | 0.9271302 | ||
| T | 20 | 0.0004915 | ||
| X | 2778 | 0.0682740 | ||
| N | 450 | D | 37978 | 0.9333727 |
| G | 2 | 0.0000492 | ||
| R | 1 | 0.0000246 | ||
| X | 2580 | 0.0634078 | ||
| Y | 1 | 0.0000246 | ||
| L | 452 | R | 146 | 0.0035882 |
| W | 37853 | 0.9303006 | ||
| X | 2572 | 0.0632112 | ||
| L | 455 | - | 2 | 0.0000492 |
| A | 1 | 0.0000246 | ||
| F | 1 | 0.0000246 | ||
| S | 38405 | 0.9438669 | ||
| X | 2110 | 0.0518568 | ||
| F | 456 | - | 3 | 0.0000737 |
| L | 38424 | 0.9443338 | ||
| S | 1 | 0.0000246 | ||
| V | 1 | 0.0000246 | ||
| X | 2043 | 0.0502101 | ||
| N | 460 | K | 38674 | 0.9504780 |
| X | 1826 | 0.0448770 | ||
| A | 475 | S | 6 | 0.0001475 |
| V | 743 | 0.0182605 | ||
| X | 981 | 0.0241097 | ||
| S | 477 | D | 10 | 0.0002458 |
| K | 2 | 0.0000492 | ||
| N | 39517 | 0.9711961 | ||
| X | 1037 | 0.0254860 | ||
| T | 478 | E | 248 | 0.0060950 |
| I | 5676 | 0.1394972 | ||
| K | 30936 | 0.7603038 | ||
| L | 16 | 0.0003932 | ||
| M | 4 | 0.0000983 | ||
| N | 45 | 0.0011060 | ||
| Q | 6 | 0.0001475 | ||
| R | 24 | 0.0005898 | ||
| V | 15 | 0.0003687 | ||
| X | 1048 | 0.0257563 | ||
| N | 481 | E | 3 | 0.0000737 |
| K | 38775 | 0.9529603 | ||
| R | 20 | 0.0004915 | ||
| T | 2 | 0.0000492 | ||
| X | 1435 | 0.0352675 | ||
| V | 483 | - | 35762 | 0.8789108 |
| D | 1 | 0.0000246 | ||
| G | 2 | 0.0000492 | ||
| K | 2 | 0.0000492 | ||
| R | 21 | 0.0005161 | ||
| X | 4561 | 0.1120942 | ||
| E | 484 | - | 98 | 0.0024085 |
| A | 8 | 0.0001966 | ||
| K | 37905 | 0.9315786 | ||
| R | 1 | 0.0000246 | ||
| S | 1 | 0.0000246 | ||
| V | 1 | 0.0000246 | ||
| X | 2117 | 0.0520288 | ||
| F | 486 | - | 1 | 0.0000246 |
| A | 1 | 0.0000246 | ||
| D | 5 | 0.0001229 | ||
| I | 1 | 0.0000246 | ||
| L | 13 | 0.0003195 | ||
| P | 38342 | 0.9423186 | ||
| S | 5 | 0.0001229 | ||
| T | 1 | 0.0000246 | ||
| V | 2 | 0.0000492 | ||
| X | 1777 | 0.0436727 | ||
| N | 487 | - | 42 | 0.0010322 |
| D | 27531 | 0.6766202 | ||
| X | 1644 | 0.0404040 | ||
| Q | 493 | E | 38928 | 0.9567205 |
| X | 763 | 0.0187520 | ||
| G | 496 | S | 42 | 0.0010322 |
| X | 1559 | 0.0383150 | ||
| Q | 498 | R | 38622 | 0.9492000 |
| X | 1985 | 0.0487847 | ||
| N | 501 | F | 1 | 0.0000246 |
| X | 1880 | 0.0462041 | ||
| Y | 38725 | 0.9517314 | ||
| Y | 505 | H | 38661 | 0.9501585 |
| X | 1861 | 0.0457372 | ||
| K | 529 | - | 1 | 0.0000246 |
| E | 11 | 0.0002703 | ||
| M | 3 | 0.0000737 | ||
| N | 57 | 0.0014009 | ||
| R | 38 | 0.0009339 | ||
| T | 841 | 0.0206690 | ||
| X | 119 | 0.0029246 | ||
| E | 554 | D | 40 | 0.0009831 |
| K | 40496 | 0.9952567 | ||
| N | 2 | 0.0000492 | ||
| X | 114 | 0.0028017 | ||
| A | 570 | - | 1 | 0.0000246 |
| V | 40538 | 0.9962889 | ||
| X | 98 | 0.0024085 | ||
| T | 572 | I | 29399 | 0.7225294 |
| N | 1 | 0.0000246 | ||
| S | 1 | 0.0000246 | ||
| V | 2 | 0.0000492 | ||
| X | 110 | 0.0027034 | ||
| T | 604 | A | 1 | 0.0000246 |
| I | 545 | 0.0133943 | ||
| N | 1 | 0.0000246 | ||
| X | 308 | 0.0075696 | ||
| P | 621 | - | 26 | 0.0006390 |
| A | 1 | 0.0000246 | ||
| F | 7 | 0.0001720 | ||
| S | 40278 | 0.9898990 | ||
| X | 322 | 0.0079137 | ||
| Y | 2 | 0.0000492 | ||
| N | 641 | - | 3 | 0.0000737 |
| D | 1 | 0.0000246 | ||
| H | 2 | 0.0000492 | ||
| K | 105 | 0.0025806 | ||
| S | 8 | 0.0001966 | ||
| T | 6 | 0.0001475 | ||
| X | 2044 | 0.0502347 | ||
| Y | 3 | 0.0000737 | ||
| V | 642 | A | 11 | 0.0002703 |
| F | 13 | 0.0003195 | ||
| G | 137 | 0.0033670 | ||
| I | 1 | 0.0000246 | ||
| L | 1 | 0.0000246 | ||
| X | 2055 | 0.0505051 | ||
| H | 655 | F | 1 | 0.0000246 |
| X | 2153 | 0.0529136 | ||
| Y | 38532 | 0.9469881 | ||
| S | 673 | K | 3 | 0.0000737 |
| T | 485 | 0.0119197 | ||
| X | 2679 | 0.0658409 | ||
| Q | 677 | H | 334 | 0.0082086 |
| K | 4 | 0.0000983 | ||
| L | 96 | 0.0023594 | ||
| P | 2 | 0.0000492 | ||
| R | 47 | 0.0011551 | ||
| X | 402 | 0.0098798 | ||
| T | 678 | - | 5 | 0.0001229 |
| I | 186 | 0.0045713 | ||
| S | 1 | 0.0000246 | ||
| X | 362 | 0.0088968 | ||
| N | 679 | - | 1 | 0.0000246 |
| K | 36925 | 0.9074934 | ||
| M | 8 | 0.0001966 | ||
| R | 2727 | 0.0670206 | ||
| T | 26 | 0.0006390 | ||
| X | 605 | 0.0148689 | ||
| S | 680 | - | 31 | 0.0007619 |
| A | 31 | 0.0007619 | ||
| F | 955 | 0.0234707 | ||
| P | 2524 | 0.0620315 | ||
| T | 8 | 0.0001966 | ||
| X | 509 | 0.0125095 | ||
| Y | 119 | 0.0029246 | ||
| P | 681 | - | 241 | 0.0059230 |
| H | 264 | 0.0064882 | ||
| L | 8 | 0.0001966 | ||
| R | 39397 | 0.9682469 | ||
| S | 7 | 0.0001720 | ||
| X | 618 | 0.0151884 | ||
| R | 683 | L | 33 | 0.0008110 |
| Q | 162 | 0.0039814 | ||
| W | 65 | 0.0015975 | ||
| X | 486 | 0.0119443 | ||
| A | 688 | D | 43 | 0.0010568 |
| G | 1 | 0.0000246 | ||
| S | 11 | 0.0002703 | ||
| T | 31 | 0.0007619 | ||
| V | 268 | 0.0065865 | ||
| X | 861 | 0.0211605 | ||
| S | 704 | L | 234 | 0.0057509 |
| X | 766 | 0.0188257 | ||
| N | 764 | K | 39909 | 0.9808302 |
| R | 1 | 0.0000246 | ||
| X | 769 | 0.0188995 | ||
| R | 765 | H | 5 | 0.0001229 |
| K | 1 | 0.0000246 | ||
| L | 141 | 0.0034653 | ||
| X | 718 | 0.0176460 | ||
| T | 791 | A | 274 | 0.0067340 |
| I | 18 | 0.0004424 | ||
| K | 1 | 0.0000246 | ||
| P | 2 | 0.0000492 | ||
| X | 1530 | 0.0376023 | ||
| D | 796 | - | 1 | 0.0000246 |
| F | 1 | 0.0000246 | ||
| H | 20 | 0.0004915 | ||
| X | 1650 | 0.0405515 | ||
| Y | 39005 | 0.9586129 | ||
| A | 845 | P | 1 | 0.0000246 |
| S | 307 | 0.0075450 | ||
| T | 2 | 0.0000492 | ||
| V | 3 | 0.0000737 | ||
| X | 1513 | 0.0371845 | ||
| S | 939 | F | 38666 | 0.9502814 |
| I | 1 | 0.0000246 | ||
| X | 1999 | 0.0491288 | ||
| G | 946 | E | 4 | 0.0000983 |
| K | 1 | 0.0000246 | ||
| R | 394 | 0.0096832 | ||
| V | 1 | 0.0000246 | ||
| X | 1897 | 0.0466219 | ||
| Q | 954 | H | 38672 | 0.9504289 |
| L | 2 | 0.0000492 | ||
| N | 1 | 0.0000246 | ||
| R | 2 | 0.0000492 | ||
| X | 1880 | 0.0462041 | ||
| Y | 18 | 0.0004424 | ||
| A | 958 | D | 2 | 0.0000492 |
| S | 589 | 0.0144757 | ||
| X | 2033 | 0.0499644 | ||
| N | 969 | K | 38603 | 0.9487331 |
| X | 2084 | 0.0512178 | ||
| D | 1084 | - | 2 | 0.0000492 |
| A | 1 | 0.0000246 | ||
| E | 1 | 0.0000246 | ||
| G | 1334 | 0.0327853 | ||
| H | 1 | 0.0000246 | ||
| N | 2 | 0.0000492 | ||
| R | 3 | 0.0000737 | ||
| V | 1 | 0.0000246 | ||
| X | 61 | 0.0014992 | ||
| Y | 2 | 0.0000492 | ||
| K | 1086 | - | 1 | 0.0000246 |
| N | 1 | 0.0000246 | ||
| Q | 1 | 0.0000246 | ||
| R | 1701 | 0.0418049 | ||
| X | 166 | 0.0040797 | ||
| V | 1104 | A | 1 | 0.0000246 |
| I | 6 | 0.0001475 | ||
| L | 2693 | 0.0661850 | ||
| X | 121 | 0.0029738 | ||
| P | 1143 | F | 65 | 0.0015975 |
| I | 1 | 0.0000246 | ||
| L | 40219 | 0.9884490 | ||
| V | 1 | 0.0000246 | ||
| X | 283 | 0.0069552 | ||
| A | 1174 | S | 1 | 0.0000246 |
| T | 2 | 0.0000492 | ||
| V | 563 | 0.0138367 | ||
| X | 679 | 0.0166876 | ||
| L | 1224 | F | 185 | 0.0045467 |
| M | 1 | 0.0000246 | ||
| X | 1756 | 0.0431566 | ||
| P | 1263 | L | 143 | 0.0035145 |
| Q | 14 | 0.0003441 | ||
| R | 5 | 0.0001229 | ||
| S | 1 | 0.0000246 | ||
| X | 1252 | 0.0307700 | ||
| V | 1264 | A | 3 | 0.0000737 |
| F | 1 | 0.0000246 | ||
| L | 1166 | 0.0286564 | ||
| M | 14 | 0.0003441 | ||
| X | 1254 | 0.0308191 |
Table 1B. Details regarding common mutations listed in A and their geographic locations.
| ori | pos | mut | covariations | location | # of occurrences | #seqs from local | #seqs from state/province | #seqs from country | #seqs from continent |
|---|---|---|---|---|---|---|---|---|---|
| L | 5 | - | L5-,T19I,R21T,T22N,L24-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Bahia_Luis-Eduardo-Magalhaes | 1 | 2 | 85 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,R346-,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,A1174V,V1264M,D614G | United-Kingdom_Wales | 1 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441I,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Basque-Country_Donostia-San-Sebastian | 1 | 380 | 822 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Goias_Pirenopolis | 1 | 3 | 87 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346-,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,A1174V,V1264M,D614G | United-Kingdom_Wales | 2 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | Puerto-Rico | 1 | 329 | North-America 16051 | ||
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,A688X,S704X,N764X,R765X,T791X,D796Y,S939F,Q954H,N969K,V1104L,P1143L,D614G | Puerto-Rico | 1 | 329 | North-America 16051 | ||
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,A67X,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477D,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,D614G | United-Kingdom_Wales | 1 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,R683Q,N764K,D796Y,S939F,Q954H,N969K,P1143L,L1224X,D614G | United-Kingdom_Scotland | 1 | 1516 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,V213G,L216F,L244X,H245X,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Chile_Valparaiso_San-Antonio | 1 | 1 | 4 | 52 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441I,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Basque-Country_Vitoria-Gasteiz | 2 | 315 | 822 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Basque-Country_Donostia-San-Sebastian | 5 | 380 | 822 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,R765L,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,D614G | Spain_Basque-Country_Donostia-San-Sebastian | 1 | 380 | 822 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19X,R21X,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | New-Zealand_Taranaki | 1 | 29 | 536 | Oceania 2263 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_Wales | 7 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332X,L335X,G339X,R346X,K356X,S371X,S373X,S375X,T376X,R403X,D405X,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Romania_Bucharest | 1 | 153 | 153 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Galicia_A-Coruna | 1 | 166 | 552 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Singapore | 3 | 383 | Asia 3352 | ||
| L | 5 | F | L5F,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S50L,F59S,H69X,V70X,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 1293 | 4385 | Europe 17481 | |
| L | 5 | F | T19X,R21X,T22N,L24-,P25-,P26-,A27S,S31P,S50X,F59X,A67X,H69X,V70X,T95X,E96X,I101X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332X,L335X,G339X,R346X,K356X,S371X,S373X,S375X,T376X,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,N764K,T791X,D796X,A845X,S939X,G946X,Q954X,A958X,N969X,P1143L,L1224X,P1263X,V1264X,D614G | USA_Colorado | 1 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19X,R21X,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939X,G946X,Q954X,A958X,N969X,P1143L,D614G | USA_Colorado | 1 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19X,R21X,T22X,L24X,P25X,P26X,A27S,S31P,S50L,A67V,H69-,V70-,V127F,G142D,Y144-,F157L,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 1 | 1293 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24X,P25X,P26X,A27X,S31P,S50L,H69X,V70X,V127F,G142D,Y144X,F157S,R158G,K182R,R190S,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440R,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Asturias | 1 | 331 | 4099 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Rio-de-Janeiro_Rio-de-Janeiro | 2 | 70 | 70 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,S477N,T478K,N481E,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,A1174V,D614G | Australia_Queensland | 1 | 726 | 1722 | Oceania 2263 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 1 | 1845 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Basque-Country_Donostia-San-Sebastian | 1 | 380 | 822 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19X,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939X,G946X,Q954X,A958X,N969X,P1143L,D614G | USA_Colorado | 1 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,L1224X,P1263X,V1264X,D614G | USA_Colorado | 2 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Colorado | 2 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,N764K,T791X,D796X,A845X,S939X,G946X,Q954X,A958X,N969X,P1143L,L1224X,P1263X,V1264X,D614G | USA_Colorado | 2 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,K444R,V445P,G446S,N450D,L452W,L455S,F456L,N460K,A475V,S477N,T478K,N481K,V483X,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,N641X,V642X,H655X,S673X,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 1 | 577 | Europe 17481 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127X,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 1 | 577 | Europe 17481 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Santa-Catarina_Brusque | 1 | 3 | 158 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Santa-Catarina_Balneario-Camboriu | 2 | 7 | 158 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157X,R158X,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681H,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 2 | 577 | Europe 17481 | ||
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31X,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,L176X,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,Q493E,G496X,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,R765L,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,D614G | Spain_Extremadura_Badajoz | 1 | 134 | 160 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,L244X,H245X,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481X,V483X,E484X,F486X,N487X,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Provence-Alpes-Cote-d-Azur_Bouches-du-Rhone | 1 | 171 | 376 | 2089 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Federal-District_Plano-Piloto | 1 | 61 | 170 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,F186C,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Federal-District_Plano-Piloto | 1 | 61 | 170 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,Q677X,T678X,N679X,S680X,P681X,R683X,A688X,N764K,D796Y,S939F,Q954H,N969K,D1084G,P1143L,P1263X,V1264X,D614G | Brazil_Federal-District_Ceilandia | 1 | 17 | 170 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Federal-District_Ceilandia | 1 | 17 | 170 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Federal-District_Guara | 1 | 6 | 170 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Federal-District_Santa-Maria | 2 | 11 | 170 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_New-Brunswick | 3 | 77 | 5001 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478L,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,S680F,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 1 | 1332 | Asia 3352 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 2 | 1332 | Asia 3352 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,T791X,D796X,S939X,G946X,Q954X,A958X,N969K,P1143L,D614G | South-Korea | 1 | 1332 | Asia 3352 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,G219S,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_Northern-Ireland | 1 | 237 | 4385 | Europe 17481 | |
| L | 5 | F | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,L244X,H245X,A263X,A264X,I332X,L335X,G339X,R346X,K356X,S371X,S373X,S375X,T376X,R403X,D405N,R408S,K417N,A435S,N440K,K444R,V445H,G446S,N450D,L452W,L455S,F456L,N460K,A475V,S477N,T478K,N481K,V483-,E484K,F486P,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Maryland | 1 | 204 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Para_Castanhal | 1 | 4 | 31 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157L,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Para_Ananindeua | 1 | 4 | 31 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Bavaria | 1 | 346 | 920 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441I,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_England | 2 | 1293 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Para_Cameta | 1 | 2 | 31 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Illinois_Chicago | 1 | 114 | 243 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_Scotland | 1 | 1516 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211X,L212X,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680-,A688X,S704X,N764X,D796Y,S939F,Q954H,N969K,P1143L,D614G | United-Kingdom_Wales | 1 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481X,V483X,E484X,F486X,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,D796Y,S939X,G946X,Q954X,A958X,N969X,K1086R,V1104L,P1143L,D614G | USA_Arizona | 1 | 388 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19X,R21X,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | New-Zealand_MidCentral | 1 | 40 | 536 | Oceania 2263 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,I101T,V127F,G142D,Y144-,F157S,R158G,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376N,R403K,D405N,R408S,K417N,N440K,V445P,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T604X,P621S,H655Y,S673X,Q677X,T678X,N679X,S680X,P681X,R683X,A688X,N764K,D796X,A845X,S939F,Q954H,N969K,V1104L,P1143L,D614G | Australia_New-South-Wales_Sydney | 1 | 445 | 445 | 1722 | Oceania 2263 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681H,N764K,D796Y,S939F,Q954H,N969K,P1143F,D614G | USA_California | 2 | 1845 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_California | 4 | 1845 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Saskatchewan | 2 | 180 | 5001 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York_Onondaga | 1 | 339 | 1233 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Brazil_Mato-Grosso-do-Sul_Campo-Grande | 1 | 19 | 59 | 1136 | South-America 1350 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,T95X,V127F,G142D,Y144-,F157S,R158G,L176X,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435X,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,H655Y,N679K,P681H,N764K,D796Y,S939F,Q954H,N969K,P1143F,A1174X,D614G | USA_Oregon | 2 | 329 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Japan_Kagoshima | 1 | 7 | 662 | Asia 3352 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | South-Korea | 4 | 1332 | Asia 3352 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Cantabria | 1 | 174 | 4099 | Europe 17481 | |
| L | 5 | F | L5F,T19I,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,V483X,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Russia_Nizhny-Novgorod-Oblast_Nizhny-Novgorod | 1 | 11 | 11 | 336 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,N764K,T791X,D796X,A845X,S939F,Q954H,N969K,P1143L,V1264X,D614G | USA_California | 1 | 1845 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,R765H,D796Y,S939F,Q954H,N969K,P1143L,D614G | Germany_Brandenburg | 1 | 22 | 920 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21X,T22N,L24-,P25-,P26-,A27S,S31P,S50X,F59X,A67X,H69X,V70X,T95X,E96X,I101X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,N487X,Q493X,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,N641X,V642X,H655X,S673X,N679K,P681R,N764K,T791X,D796X,A845X,S939X,G946X,Q954X,A958X,N969X,P1143L,L1224X,P1263X,V1264X,D614G | USA_Colorado | 1 | 1163 | 10434 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,A1174V,D614G | USA_California_Marin | 1 | 25 | 1845 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346-,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,A1174V,V1264M,D614G | United-Kingdom_Wales | 7 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Basque-Country_Bizkaia | 1 | 127 | 822 | 4099 | Europe 17481 |
| L | 5 | F | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332X,L335X,G339X,R346X,K356X,S371X,S373X,S375X,T376X,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655X,S673X,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086X,P1143L,D614G | Canada_Ontario | 1 | 3363 | 5001 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 6 | 3363 | 5001 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Galicia_A-Coruna | 1 | 166 | 552 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S50L,F59S,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,G184S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,A435S,N440K,V445H,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478I,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679K,P681-,A688X,S704X,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 3363 | 5001 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,A67V,H69-,V70-,V127F,G142D,Y144-,F157L,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Netherlands_Zuid-Holland | 1 | 230 | 984 | Europe 17481 | |
| L | 5 | F | L5F,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157A,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Italy | 1 | 740 | Europe 17481 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,L244X,H245X,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376S,R403X,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481X,V483X,E484X,F486X,N487X,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Auvergne-Rhone-Alpes_Rhone | 5 | 588 | 795 | 2089 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50X,F59X,A67X,H69X,V70X,T95X,E96X,I101X,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_Minnesota_Minneota | 3 | 616 | 618 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Denmark | 1 | 577 | Europe 17481 | ||
| L | 5 | F | L5F,T19A,R21X,T22X,L24X,P25X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,D1084G,P1143L,D614G | Tunisia_Le-Kef | 1 | 1 | 5 | Africa 192 | |
| L | 5 | F | T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,T95X,V127F,G142D,Y144-,F157S,R158G,L176X,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,S375X,T376X,R403X,D405X,R408X,K417X,A435X,N440X,L441X,K444X,V445X,G446X,N450X,L452X,L455X,F456X,N460X,A475X,S477X,T478X,N481X,V483X,E484X,F486X,N487X,Q493X,G496X,Q498X,N501X,Y505X,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Murcia | 1 | 317 | 4099 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,A958S,N969K,P1143L,D614G | Belgium | 1 | 152 | Europe 17481 | ||
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Provence-Alpes-Cote-d-Azur_Bouches-du-Rhone | 1 | 171 | 376 | 2089 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York_Herkimer | 1 | 3 | 1233 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Spain_Basque-Country_Bizkaia | 2 | 127 | 822 | 4099 | Europe 17481 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,A958S,N969K,P1143L,D614G | United-Kingdom_Wales | 1 | 1339 | 4385 | Europe 17481 | |
| L | 5 | F | L5F,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157X,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | USA_New-York_Monroe | 1 | 144 | 1233 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19X,R21X,T22X,L24X,P25X,P26X,A27X,S31-,S50X,F59X,A67X,H69X,V70X,T95X,E96X,I101X,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483X,E484X,F486X,N487X,Q493E,Q498X,N501X,Y505X,E554K,A570V,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,A1174V,D614G | USA_California_Sonoma | 1 | 76 | 1845 | 10434 | North-America 16051 |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,P681R,N764K,D796Y,S939F,Q954H,A958S,N969K,P1143L,D614G | Germany_Bavaria | 1 | 346 | 920 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,N679K,S680P,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | France_Grand-Est | 1 | 158 | 2089 | Europe 17481 | |
| L | 5 | F | L5F,T19I,R21T,T22N,L24-,P25-,P26-,A27S,S31P,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,K182R,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,N487D,Q493E,Q498R,N501Y,Y505H,E554K,A570V,T572I,P621S,H655Y,Q677H,N679K,P681R,N764K,D796Y,S939F,Q954H,N969K,P1143L,D614G | Canada_Ontario | 1 | 3363 | 5001 | North-America 16051 | |
| L | 5 | F | L5F,T19I,R21T,L24-,P25-,P26-,A27S,S31-,S50L,H69-,V70-,V127F,G142D,Y144-,F157S,R158G,F186L,R190S,N211-,L212I,V213G,L216F,H245N,A264D,I332V,G339H,R346T,K356T,S371F,S373P,T376A,R403K,D405N,R408S,K417N,N440K,L441I,K444R,V445R,G446S,N450D,L452W,L455S,F456L,N460K,S477N,T478K,N481K,V483-,E484K,F486P,Q493E,Q498R,N501Y,Y505H,E554K,A570V,P621S,H655Y,N679R,P681R,N764K,D796Y,S939F,Q954H,N969K,K1086R,V1104L,P1143L,D614G | Italy | 1 | 740 | Europe 17481 |
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