COVID-19 Viral Genome Analysis Pipeline
Enabled by data from
XSpike
eXplore the Spike protein sequence in the SARS CoV-2 virus
Last update: Sep 18, 2022
Delta and Omicron Variants
Global
Wuhan reference
Download
 | |
 |
 |
 |
 |
Evaluating 352921 sequences of length 3478
Sampled from 2022-07-20 to 2022-09-10.
Specified Date Range: ['2022-07-20', '2022-09-18']
Highest entropy sites for: Global
Site Entropy
346 0.2679
658 0.1920
452 0.1850
76 0.1662
1020 0.1625
486 0.1599
70 0.1587
69 0.1512
3 0.1397
440 0.1264
493 0.1183
5 0.0744
408 0.0744
704 0.0692
144 0.0680
444 0.0670
417 0.0637
446 0.0537
339 0.0535
147 0.0525
460 0.0524
157 0.0486
152 0.0480
181 0.0462
257 0.0436
1162 0.0418
210 0.0413
289 0.0357
547 0.0326
24 0.0307
27 0.0295
1263 0.0292
701 0.0271
26 0.0257
142 0.0256
146 0.0243
445 0.0235
19 0.0233
681 0.0216
248 0.0207
259 0.0201
450 0.0198
255 0.0197
1264 0.0196
484 0.0195
371 0.0186
153 0.0180
574 0.0169
213 0.0168
478 0.0165
Most highly correlated site-pairs for: Global
cramerV mutInfo
70 69 0.5772 0.1452
486 70 0.4283 0.1310
452 486 0.5477 0.1294
486 69 0.5398 0.1257
452 70 0.5292 0.1236
452 69 0.5185 0.1185
486 493 0.5144 0.1035
452 493 0.5031 0.1010
70 493 0.6075 0.0967
69 493 0.5931 0.0942
346 658 0.3343 0.0915
452 704 0.6665 0.0602
493 704 0.4681 0.0452
70 704 0.4159 0.0421
486 704 0.4191 0.0421
24 26 0.9253 0.0237
27 26 0.9210 0.0231
24 27 0.8695 0.0252
157 19 0.5774 0.0010
257 210 0.5600 0.0356
152 210 0.5569 0.0357
339 257 0.5560 0.0354
339 152 0.5532 0.0353
152 257 0.5440 0.0343
147 152 0.5394 0.0341
147 257 0.5383 0.0338
460 257 0.5309 0.0337
460 152 0.5266 0.0333
339 157 0.5242 0.0335
157 210 0.5155 0.0334
Most common patterns for local area, where Local = Global
1111
11111111222222233344444444444445566770122
122267744445558114555834701444455678894758002666
35946790624672371038579996187045602084637481140234
VLTLPAHVTGYHKWMFGIVYSGTVGRSRKNKVGNLNTEFQTDNPASAPPV Global UK Eu-UK NAmer Asia Africa SAmer Ocean Local Exact Pct [Context]
352921 28394 94504 160393 51751 588 5786 11505 320138 <----------- Totals
..I--S--.D........G.....D.FSNK....R.KAV....H...... 214988 15205 57872 101721 32761 274 1133 6022 214988 177443 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.....D.FSNK....R.KAV....H...... 11393 218 482 10073 522 0 16 82 11393 9436 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H..S... 10503 423 1893 2141 5936 5 9 96 10503 9127 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK....R.KAV...SH...... 10452 772 1001 8246 115 19 126 173 10452 9075 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSNK....R.KAV....H...... 8222 490 954 5618 758 41 119 242 8222 6536 79% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSN.....R.KAV....H...... 4989 0 2855 1318 260 7 549 0 4989 4111 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....DTFSNK....R.KAV....H...... 4608 548 2231 1568 190 21 13 37 4608 3797 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSNK....Q.KA.R...H.L.... 3388 71 254 2710 278 1 27 47 3388 2385 70% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
.FI--S--.D........G.....D.FSNK....R.KAV....H...... 3259 321 1066 1418 385 1 13 55 3259 2670 81% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV...SH...... 2820 325 516 1645 162 14 47 111 2820 2354 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......G.....D.FSNK....R.KAV....H...... 2583 318 713 1121 327 5 14 85 2583 2110 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.F.NK....R.KAV....H...... 1962 0 926 402 173 4 455 2 1962 1611 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....D.FSNK......KA.R...H...... 1717 23 231 187 1080 1 14 181 1717 975 56% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--.D........G....ID.FSNK....R.KAV....H...... 1522 48 792 617 43 2 11 9 1522 1256 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,V289I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H...L.. 1339 154 358 718 92 2 5 10 1339 1080 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
..I--S--.D......V.G.....D.FSNK....R.KAV....H...... 1006 90 207 663 29 0 7 10 1006 848 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DIFSNK....R.KAV....H...... 967 77 613 170 81 5 10 11 967 716 74% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H....Q. 858 186 353 256 50 0 0 13 858 712 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263Q] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNKR...R.KAV....H...... 736 42 175 394 106 0 10 9 736 599 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G...A.D.FSNK....R.KAV....H...... 699 115 134 334 109 2 3 2 699 608 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T259A,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--..........G.....D.FSN.....R.KAV....H...... 679 0 479 57 48 0 95 0 679 578 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV....HS..... 638 26 24 559 22 0 0 7 638 511 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A701S,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D..ER.L.VG..S..H.FSNK..S..KKA.....H...... 614 23 51 191 258 0 0 91 614 312 50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV........... 612 0 600 3 3 0 0 6 612 362 59% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV....H.....L 604 54 159 309 73 0 1 8 604 474 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNKT...R.KAV....H...... 573 73 67 391 28 4 9 1 573 470 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK.A..R.KAV....H...... 564 28 155 333 26 6 11 5 564 427 75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D....I...G.....D.FSNK....R.KAV....H...... 544 41 167 310 21 0 0 5 544 310 56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,M153I,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.F...D.FSNK....R.KAV....H...... 539 100 178 189 63 0 7 2 539 435 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNKN...R.KAV....H...... 519 77 120 219 68 3 9 23 519 433 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.F.........KAV....H...... 505 0 1 504 0 0 0 0 505 300 59% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....DSFSNK....R.KAV....H...... 504 26 79 361 18 1 3 16 504 427 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....DTFSNK....R.KAV....H...... 480 63 45 346 15 10 1 0 480 394 82% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK...DR.KAV....H...... 473 14 372 74 10 1 1 1 473 421 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSTK......KA.R...H...... 453 20 42 96 265 1 2 27 453 339 74% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+K417T
..I--S-L.D........G.....D.FSNK....R.KAV....H...... 447 0 423 16 6 1 1 0 447 382 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70L,S71X,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..IFI---.D........G.....D.FSNK....R.KAV....H...... 415 0 414 1 0 0 0 0 415 321 77% [T19I,L24F,P25-,P26I,A27-,Y28X,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV.I..H...... 399 24 116 151 20 0 2 86 399 350 87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D..ER.L.VG..S..H.FSNK..S..KKA...V.H...... 396 18 49 91 186 0 0 52 396 268 67% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D574V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D......A.G.....D.FSNK....R.KAV....H...... 377 173 132 61 9 1 0 1 377 295 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181A,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV.K..H...... 342 40 56 160 81 0 1 4 342 285 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H...S.. 331 19 120 157 29 0 0 6 331 292 88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV.I..H..S... 324 41 37 128 111 0 0 7 324 247 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSNK....M.KA.R...H...... 322 6 50 83 167 1 8 7 322 218 67% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452M,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452M
..I--S--.D........G.....DSFSNK....R.KAV...SH...... 319 108 148 44 14 3 0 2 319 268 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........GN....DTFSNK......KA.R...H...... 318 12 54 89 120 0 0 43 318 269 84% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,Y248N,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--.D........G.....D.FS.K....R.KAV....H...... 317 0 97 35 182 0 2 1 317 243 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.FSNK...DR.KAV....H...... 310 6 18 270 16 0 0 0 310 269 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
...--S--.D........G.....D.FSNK....R.KAV....H...... 290 1 227 12 41 6 0 3 290 225 77% [L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNKM...R.KAV....H...... 288 35 122 105 19 1 1 5 288 224 77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444M,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D.....L..G.....D.FSNK....R.KAV....H...... 287 19 79 141 29 1 2 16 287 228 79% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D.Y......G.....D.FSNK....R.KAV....H...... 280 31 36 191 18 0 0 4 280 256 91% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146Y,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D..ER.L.VG..S..HTFSNK..S..KKAS....H...... 280 10 51 104 91 0 0 24 280 165 58% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D1199N]
..L--S--.D........G.....D.FSNK....R.KAV....H...... 271 26 97 128 13 3 2 2 271 224 82% [T19L,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV....HV..... 269 15 53 175 25 0 0 1 269 207 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSN.....R.KAV....H...... 233 0 32 94 16 1 90 0 233 183 78% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.FSN.....R.KAV....H...... 226 0 21 185 4 0 16 0 226 174 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........E.....D.FSNK....R.KAV....H...... 209 5 42 152 8 0 0 2 209 174 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213E,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK..S.R.KAV....H...... 198 8 92 75 15 0 7 1 198 111 56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H....L. 198 12 55 101 27 1 0 2 198 162 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263L] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAI....H...... 187 3 58 68 56 0 1 1 187 164 87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486I,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....N.FSNK......KA.R...H...... 179 0 0 0 179 0 0 0 179 150 83% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339N,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........GH....D.FSNK....R.KAV....H...... 175 19 51 58 21 0 2 24 175 145 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248H,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSN.....R.KAV...SH...... 175 0 47 95 1 0 32 0 175 149 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSN.....R.KAV....H..S... 174 0 92 19 62 1 0 0 174 141 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S]
..I--S--.D........G.....D.F.NK....R.KAV....H..S... 167 0 114 9 43 0 1 0 167 143 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S]
..I--S--.D--......G.....D.FSNK....R.KAV....H...... 166 23 35 93 7 1 0 7 166 147 88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KVV....H...... 164 13 60 72 16 0 2 1 164 133 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484V,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....RSKAV....H...... 159 9 35 107 8 0 0 0 159 123 77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460S,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D..SNK....R.KAV....H...... 158 16 108 5 6 0 22 1 158 126 79% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV....H..V... 155 4 57 72 12 0 1 9 155 135 87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020V] Omicron_BA.4andBA.5
..I--S--.D...L....G.....DTFSNK....R.KAV...SH...... 151 123 6 21 1 0 0 0 151 125 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK..D.R.KAV....H...... 146 9 38 77 17 1 2 2 146 109 74% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--..........G.....D.FSNK....R.KAV....H...... 141 0 70 13 15 0 43 0 141 117 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H.L.... 135 16 32 69 16 0 1 1 135 106 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.F.NK....R.KAV....H...... 134 0 10 32 15 0 77 0 134 117 87% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
.FI--S--ID........G.....D.FSNK....R.KAV....H...... 131 0 7 115 8 0 1 0 131 98 74% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK.F..R.KAV....H...... 130 7 35 80 5 1 0 2 130 111 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445F,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D......R.G.....D.FSNK....R.KAV....H...... 113 2 12 71 20 0 1 7 113 95 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181R,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D..ER.L.VG..S..HTFSNK..S..KKA...V.H...... 111 4 19 24 43 0 0 21 111 86 77% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D574V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
.FI--S--.D........G.....D.FSNK....R.KAV....H..S... 109 6 23 32 48 0 0 0 109 96 88% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSN.....R.KAV....H...... 106 0 77 25 1 0 3 0 106 94 88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D...L....G.....D.FSNK....R.KAV....H...... 102 7 22 60 8 0 0 5 102 74 72% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID-.......G.....D.FSNK....R.KAV....H...... 102 1 7 92 2 0 0 0 102 86 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSN.....R.KAV...SH...... 98 0 17 50 5 0 26 0 98 84 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....DKFSNK....R.KAV....H...... 90 11 14 61 2 0 0 2 90 76 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346K,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV...SHV..... 89 3 0 86 0 0 0 0 89 68 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D......E.G.....D.FSNK....R.KAV...SH...... 88 5 0 4 6 0 0 73 88 78 88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,Q1201L] Omicron_BA.4andBA.5
..I--S--.D..I.....G.....D.FSNK....R.KAV....H...... 88 14 42 24 4 1 2 1 88 74 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D..N.....G.....D.FSNK....R.KAV....H...... 86 3 37 43 2 1 0 0 86 73 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......G.....DTFSNK....R.KAV...SH...... 86 21 3 61 0 0 0 1 86 67 77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I.----.D........G.....D.FSNK....R.KAV....H...... 85 3 21 42 15 0 0 4 85 74 87% [T19I,P25-,P26-,A27-,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....RIKAV....H...... 83 13 48 18 1 0 0 3 83 70 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460I,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D.Q......G.....D.FSNK....R.KAV....H...... 81 11 13 50 5 0 0 2 81 65 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146Q,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G...I.D.FSNK....R.KAV....H...... 79 3 18 51 7 0 0 0 79 70 88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T259I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTF.NK....R.KAV...SH...... 78 0 16 11 0 0 51 0 78 67 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....D.FSN.....Q.KA.R...H.L.... 77 0 5 42 2 0 28 0 77 60 77% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F..K....R.KAV....H...... 77 0 21 51 5 0 0 0 77 52 67% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....DTFSNK....M.KA.R...H...... 75 5 18 21 26 0 0 5 75 65 86% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452M,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452M
..I--S--.D-.......G.....D.FSNK....R.KAV....H..S... 75 3 12 33 24 0 0 3 75 71 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--ID........G.....D.F.NK....R.KAV....H...... 74 0 5 63 5 0 1 0 74 57 77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
.FI--S--.D........G.....DTFSNK....R.KAV...SH...... 73 3 3 62 0 0 1 4 73 64 87% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.FI--S...D........G.....D.FSNK....Q.KA.R...H.L.... 72 1 11 53 4 0 0 3 72 42 58% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
.FI--S--.D........G.....D.FSN.....R.KAV....H...... 71 0 40 21 3 0 7 0 71 61 85% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....D.FSNK....R.KAV....H...... 71 0 8 49 12 0 0 2 71 31 43% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSNK....Q.KA.R...H.L...L 70 2 3 63 1 0 0 1 70 59 84% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,V1264L] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S...D........G.....D.F.NK....Q.KA.R...H.L.... 70 0 6 28 5 0 31 0 70 52 74% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....Y.FSNK....R.KAV....H...... 69 3 10 35 16 0 0 5 69 45 65% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339Y,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
G.I--S--.D........G.....DIFSNK....R.KAV....H...... 68 1 1 62 0 1 0 3 68 57 83% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D.-......G.....D.FSNK....R.KAV....H...... 67 3 32 21 9 0 0 2 67 56 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNKT...RKKAV....H...... 67 9 17 39 1 0 0 1 67 46 68% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G..D..D.FSNK....R.KAV....H...... 66 3 11 37 10 1 1 3 66 54 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......G.....DTFSNK....R.KAV....H...... 66 3 33 23 5 0 0 2 66 54 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.RAV....H...... 64 1 34 24 3 0 0 2 64 55 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.F.........KAV....H...... 64 0 0 64 0 0 0 0 64 37 57% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D.....L..G.....D.FSNK......KA.R...H...... 63 0 2 3 58 0 0 0 63 46 73% [T19I,L24-,P25-,P26-,A27S,G142D,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--.D...R....G.....D.FSNK....R.KAV....H...... 63 3 25 30 4 1 0 0 63 57 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152R,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D...NK....R.KAV....H...... 62 0 62 0 0 0 0 0 62 27 43% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KSV....H...... 61 8 28 19 4 0 0 2 61 48 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484S,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G....ID.FSN.....R.KAV....H...... 59 0 52 5 1 0 1 0 59 45 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,V289I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D..E.....G.....D.FSNK....R.KAV....H...... 56 0 23 31 1 0 0 1 56 40 71% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK..V.R.KAV....H...... 55 6 17 28 3 0 1 0 55 46 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446V,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D..T.....G.....D.FSNK....R.KAV....H...... 55 2 47 4 2 0 0 0 55 52 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147T,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D..............D.F.NK....R.KAV....H...... 55 0 2 2 50 1 0 0 55 22 40% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G339D,S371F,S373P,T376X,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D-.......G.....D.FSN.....R.KAV....H...... 53 0 27 11 6 0 9 0 53 44 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F..........AV....H...... 53 0 0 53 0 0 0 0 53 15 28% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....DTFSNK......KA.R...H...... 52 4 15 11 12 0 1 9 52 24 46% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--.D........G.....D.F.......R.KAV....H...... 52 0 1 51 0 0 0 0 52 41 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D-.......G.....D.FSNKT...R.KAV....H...... 49 0 43 3 3 0 0 0 49 40 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........GS....D.FSTKN.....KA.R...H...... 49 1 6 14 25 0 0 3 49 44 89% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,S247N,Y248S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,K444N,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+K417T
..I--S...D..ER.L.VG..S..HTFSNK..S..KKA.....H...... 49 0 7 17 24 0 0 1 49 25 51% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D-...I...G.....D.FSNK....R.KAV....H...... 48 8 7 28 5 0 0 0 48 41 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,M153I,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK..S.R.KAV.I..H..S... 47 0 6 13 28 0 0 0 47 42 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV...SH..S... 45 0 43 2 0 0 0 0 45 32 71% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G261V,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK......KA.R...H...... 45 3 16 19 4 0 1 2 45 39 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--.D-.......G.....D.FSTK..S.Q.RA.R...H.....L 45 1 0 26 17 0 0 1 45 39 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,S71F,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,G446S,L452Q,S477N,T478R,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L]
..I......D..ER.L.VG..S..H.FSNK..S..KKA.....H...... 45 0 0 0 45 0 0 0 45 23 51% [T19I,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D...........KAV....H...... 45 0 0 45 0 0 0 0 45 9 20% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
.FI--S--.D-.......G.....D.FSNK....R.KAV....H...... 43 13 4 26 0 0 0 0 43 36 83% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.....D.FSNKR...R.KAV....H...... 43 2 2 39 0 0 0 0 43 37 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....Q.KAV....H...... 42 3 8 26 4 0 0 1 42 36 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSN.......KAV....H...... 42 0 3 37 1 0 1 0 42 26 61% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D......E.G.....D.FSNK....R.KAV....H...... 41 3 18 16 3 0 0 1 41 38 92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D....V...G.....D.FSNK....R.KAV....H...... 40 1 12 19 8 0 0 0 40 19 47% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K150N,M153V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....RKKAV....H...... 40 1 9 29 0 0 0 1 40 33 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....Y...... 40 3 12 16 7 0 1 1 40 33 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681Y,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.................KAV....H...... 40 0 0 40 0 0 0 0 40 21 52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K]
.FI--S--.D........G.....DTFSNK....R.KAV....H...... 39 10 19 7 0 1 0 2 39 26 66% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D..ER.L.VG..S..H.FSNK..S..KKAS....H...... 39 0 2 11 22 0 0 4 39 32 82% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D..N.....G.....D.FSNK....R.KAV....H..S... 38 14 20 0 4 0 0 0 38 34 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....DTF.NK....R.KAV....H...... 38 0 28 5 3 0 2 0 38 33 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G..S..D.FSNK....R.KAV....H...... 37 1 27 7 2 0 0 0 37 33 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.....D.FSNK....R.KAV....H...S.. 37 0 1 36 0 0 0 0 37 33 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
..I--S--.D......V.G.F...D.FSNK....R.KAV....H...... 34 0 33 1 0 0 0 0 34 32 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181V,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.......FSNK....R.KAV....H...... 34 2 12 18 2 0 0 0 34 25 73% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
.FI--S--.D........G....ID.FSNK....R.KAV....H...... 33 0 11 18 1 0 0 3 33 18 54% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,V289I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.FI--S--.D........G.....D.FSNK....R.KAV...SH...... 33 0 5 24 1 0 2 1 33 25 75% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.FI--S--.D........G.....D.F.NK....R.KAV....H...... 33 0 15 3 2 0 13 0 33 28 84% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....RYKAV....H...... 33 3 11 15 3 0 0 1 33 28 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460Y,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....H....S. 33 5 5 14 9 0 0 0 33 27 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263S] Omicron_BA.4andBA.5
..I--S--.D......V.G.....D.FSN.....R.KAV....H...... 33 0 19 5 0 0 9 0 33 30 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAA....H...... 32 6 9 14 3 0 0 0 32 27 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D..E.....G.....DTFSNK....R.KAV...SH...... 31 0 3 27 0 1 0 0 31 28 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DIFSN.....R.KAV....H...... 31 0 29 0 2 0 0 0 31 26 83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R........H...... 31 0 1 20 10 0 0 0 31 8 25% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I......D..ER.L.VG..S..H.FSNK..S..KKA...V.H...... 31 0 0 0 31 0 0 0 31 14 45% [T19I,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D574V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KA.....H...... 30 3 12 9 5 0 0 1 30 21 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSN.....R.KAV....H...L.. 30 0 22 7 0 0 1 0 30 17 56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L]
..I--S...D........GH....D.FSNK....Q.KA.R...H.L.... 30 1 1 28 0 0 0 0 30 20 66% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,Y248H,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--.D........G.....D.F................H...... 30 0 0 30 0 0 0 0 30 6 20% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K]
..I--S--.D........G.F...D.FSNK....R.KAV....H..S... 29 0 13 8 8 0 0 0 29 28 96% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D.......TG.....D.FSNK....R.KAV....H...... 29 5 10 13 1 0 0 0 29 22 75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,I210T,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--ST-.D........G.....D.FSNK....R.KAV....H...... 29 0 11 16 1 0 1 0 29 27 93% [T19I,L24-,P25-,P26-,A27S,I68-,H69T,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D-.......G.....D.FSNK....R.KAV....H...... 28 2 1 24 1 0 0 0 28 26 92% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK.A..R.KAV....H...... 28 0 3 24 1 0 0 0 28 27 96% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.FI--S...D........G.....D.FSNK......KA.R...H...... 27 0 2 1 18 0 0 6 27 13 48% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--.--.D........G.....D.FSNK....R.KAV....H...... 27 0 20 7 0 0 0 0 27 14 51% [T19I,L24-,P25-,P26-,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........GN....D.FSNK......KA.R...H...... 26 1 12 11 2 0 0 0 26 13 50% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,+247SGE,Y248N,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--..........G.....D.FSN.....R.KAV....H..S... 26 0 22 1 2 0 1 0 26 16 61% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S]
G.I--S--.D......V.G.....D.FSNK....R.KAV....H...... 26 0 8 4 0 0 0 14 26 13 50% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,I670V,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID.....L..G.....D.FSNK....R.KAV....H...... 26 0 1 25 0 0 0 0 26 19 73% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G....LD.FSNK....R.KAV....H...... 25 1 7 16 1 0 0 0 25 24 96% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,V289L,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.II--S--.D........G.....D.FSNK....R.KAV....H...... 25 0 22 3 0 0 0 0 25 21 84% [L5I,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....HT..... 25 1 1 21 2 0 0 0 25 21 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A701T,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.FI--S--.D........G.....D.FSNKR...R.KAV....H...... 24 0 1 22 1 0 0 0 24 23 95% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK.A..R.KAV....H..S... 24 1 16 3 4 0 0 0 24 18 75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSNK...DR.KAV....H...... 24 0 3 20 1 0 0 0 24 22 91% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.F.........KAV....H...... 24 0 0 24 0 0 0 0 24 16 66% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D-.......G....ID.FSNK....R.KAV....H...... 23 0 23 0 0 0 0 0 23 19 82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,V289I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D..ER.L.VG..S..H.FSNK..S.RKKA.....H...... 23 0 5 5 12 0 0 1 23 16 69% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
G.I--S--.D........G.....D.FSNK.A..R.KAV....H...... 23 0 1 21 0 0 0 1 23 20 86% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.....D.FSNK....R.KAV....HV..... 23 0 0 23 0 0 0 0 23 17 73% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSN.......KA.R...H...... 22 0 6 12 0 0 4 0 22 11 50% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--.D........G.....D.FSNK....R.EAV....H...... 22 3 4 12 1 0 0 2 22 20 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478E,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D.....L..G.....D.FSNK....Q.KA.R...H.L.... 22 0 2 20 0 0 0 0 22 11 50% [T19I,L24-,P25-,P26-,A27S,G142D,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--.D........R.....D.FSNK....R.KAV....H...... 22 4 2 12 3 0 0 1 22 18 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213R,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..ISH---.D........G.....D.FSNK....R.KAV....H...... 22 0 14 5 3 0 0 0 22 15 68% [T19I,L24S,P25-,P26H,A27-,Y28-,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D--....E.G.....D.FSNK....R.KAV....H...... 22 4 4 14 0 0 0 0 22 20 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146-,G181E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....D.F.........KA.R...H.L.... 22 0 0 22 0 0 0 0 22 12 54% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV....H..S..L 21 0 1 3 17 0 0 0 21 17 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S,V1264L] Omicron_BA.4andBA.5
..I--S--.D-.......G.....D.F.NK....R.KAV....H...... 21 0 7 5 4 0 5 0 21 17 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F.NK....R.KAV...SH...... 21 0 9 2 1 0 9 0 21 17 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D...R....G.....D.FSNK....R.KAV....H...L.. 21 1 0 20 0 0 0 0 21 16 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152R,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
..I--S--.D..R.....G.....D.FSNK....R.KAV....H...... 20 1 9 9 0 0 0 1 20 14 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147R,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSNKR...R.KAV....H...... 20 0 1 15 1 0 0 3 20 18 90% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.F...D.FSNK....R.KAV....H...... 20 0 0 20 0 0 0 0 20 14 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK....R.KAV........... 20 0 19 1 0 0 0 0 20 14 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,N764K,D796Y,Q954H,N969K]
G.I--S--.D........G.....DTFSN.....R.KAV....H...... 20 0 2 15 0 0 3 0 20 16 80% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F.N.......KAV....H...... 20 0 0 20 0 0 0 0 20 18 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D............AV....H...... 20 0 0 20 0 0 0 0 20 6 30% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S373P,S375F,T376A,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--..........G.....DTFSN.....R.KAV....H...... 20 0 20 0 0 0 0 0 20 16 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNKN...R.KAV....H..S... 19 0 1 15 3 0 0 0 19 17 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--ID........G.....DTFSNK....R.KAV....H...... 19 1 4 13 1 0 0 0 19 15 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK......KAV....H...... 19 1 1 12 4 0 0 1 19 15 78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..V--S--.D........G.....D.FSNK....R.KAV....H...... 19 0 6 7 6 0 0 0 19 10 52% [T19V,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.F...D.FSN.....R.KAV....H...... 19 0 3 2 1 0 13 0 19 17 89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D.L......G.....D.FSNK....R.KAV....H...... 19 0 2 16 0 0 0 1 19 19 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSNKT...R.KAV....H...... 19 0 15 3 0 1 0 0 19 15 78% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,I1221T] Omicron_BA.4andBA.5
..I--S--.D........G.....D.F.N.....R.KAV....H...... 19 0 1 18 0 0 0 0 19 13 68% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D.Y......G.....DTFSNK....R.KAV...SH...... 19 0 0 19 0 0 0 0 19 19 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146Y,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--..........G........................H...... 19 0 0 19 0 0 0 0 19 7 36% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K]
..I......D..ER.L.VG..S..HTFSNK..S..KKAS....H...... 19 0 0 0 19 0 0 0 19 11 57% [T19I,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D1199N]
..I--S...D........G.....D.FSNK......KA.R...H.L.... 18 0 2 3 9 0 0 4 18 10 55% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,R357K,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S...D........GS....D.FSNK......KA.R...H...... 18 2 5 9 1 0 0 1 18 4 22% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,Y248S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,E1202Q] Omicron_BA.2
..I--S--.D........G.....D.FSNK....R.KAV..Y.H...... 18 1 4 8 4 0 0 1 18 14 77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D574Y,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S-L.D........G.....D.FSNK....R.KAV....H..S... 18 0 17 1 0 0 0 0 18 14 77% [T19I,L24-,P25-,P26-,A27S,H69-,V70L,S71X,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S...D.....S..G.....D.FSNK......KA.R...H...... 18 0 9 0 7 0 1 1 18 11 61% [T19I,L24-,P25-,P26-,A27S,G142D,F157S,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S...D........G.....D.FSNK...D..KA.R...H...... 18 0 4 1 13 0 0 0 18 8 44% [T19I,L24-,P25-,P26-,A27S,W64L,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
......--.D-.............DKL.NK..S...KA.RK..H...... 18 3 9 4 1 1 0 0 18 5 27% [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] Omicron_BA.1.1
..I--S--.D........G.....DTFSNK....R.KAV...SH....S. 18 18 0 0 0 0 0 0 18 17 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263S] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK....R.KAV....H..S... 18 0 2 2 14 0 0 0 18 17 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.-I--S--.D........G.....D.FSNK....R.KAV....H...... 18 0 12 4 1 0 1 0 18 8 44% [F4-,L5-,+5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNKT...RKKAV....H...... 18 7 2 6 1 0 0 2 18 18 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D....T...G.....D.FSNK....R.KAV....H...... 17 0 3 10 4 0 0 0 17 12 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,M153T,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....DTFSNKR...R.KAV....H...... 17 0 1 16 0 0 0 0 17 15 88% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D-.......G.....D.FSNK....Q.KA.R...H.L.... 17 1 0 16 0 0 0 0 17 8 47% [T19I,L24-,P25-,P26-,A27S,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--ID........G.....D.FSNKN...R.KAV....H...... 17 0 0 17 0 0 0 0 17 11 64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK.A..R.KAV...SH...... 17 0 0 17 0 0 0 0 17 16 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK....R.KAV...SH.....L 17 0 0 16 0 0 0 1 17 16 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L] Omicron_BA.4andBA.5
..I--S--.D........G.....DIFSNK....R.KAV........... 17 0 16 0 0 0 0 1 17 8 47% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--.D........G....ID.FSNK....R.KAV........... 17 0 17 0 0 0 0 0 17 11 64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,V289I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK.I..R.KAV....H...... 17 3 5 8 1 0 0 0 17 15 88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445I,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D......V.G.....DTFSNK....R.KAV...SH...... 17 2 5 9 0 0 1 0 17 16 94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181V,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSN.....R.KAV....H....Q. 17 0 15 1 1 0 0 0 17 17 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263Q]
..I--S--.D........G........................H...... 17 0 0 17 0 0 0 0 17 6 35% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.F...D.FSNK.A..R.KAV....H...... 17 0 0 16 1 0 0 0 17 10 58% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y145H,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KPV....H...... 16 1 2 5 8 0 0 0 16 11 68% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484P,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV..N.H...... 16 3 6 7 0 0 0 0 16 9 56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D574N,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--..........G.....D.FSN.....R.KAV....H...... 16 0 6 5 1 0 4 0 16 15 93% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....DTFSNK....R.KAV....H....Q. 16 4 3 9 0 0 0 0 16 15 93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263Q] Omicron_BA.4andBA.5
...--S...D..ER.L.VG..S..H.FSNK..S..KKA.....H...... 16 0 0 0 16 0 0 0 16 14 87% [L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D..Q.....G.....D.FSNK....R.KAV....H...... 16 0 10 1 5 0 0 0 16 14 87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147Q,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....Q.KA.R...H.L.... 16 0 3 8 3 0 0 2 16 14 87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--.D........G.....D.FS.K....R.KAV....H..S... 16 0 1 1 14 0 0 0 16 10 62% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S]
..I--S--.D........GS....D.FSNK....R.KAV....H...... 16 0 10 0 2 0 0 4 16 6 37% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D..............D.FSNK....R.KAV....H...... 16 0 5 6 4 1 0 0 16 10 62% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.F...D.FSNK....Q.KA.R...H.L.... 16 0 0 15 0 0 1 0 16 9 56% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--ID........G.....D.FSNK.A..R.KAV....H...... 16 0 0 16 0 0 0 0 16 10 62% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID.-......G.....D.FSNK....R.KAV....H...... 16 1 0 15 0 0 0 0 16 9 56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G75D,T76I,G142D,H146-,V213G,T250P,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....D.F.........KAV....H...... 16 0 0 16 0 0 0 0 16 8 50% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D-.......G.....D.FSNK...DR.KAV....H...... 16 1 8 3 2 0 0 2 16 14 87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.F..K......KAV....H...... 16 0 0 16 0 0 0 0 16 15 93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,N440K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..IFI---.D........G.....DSFSNK....R.KAV....H...... 16 0 16 0 0 0 0 0 16 14 87% [T19I,L24F,P25-,P26I,A27-,Y28X,H69-,V70-,G142D,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I...--.D........G.....D.FSNK....R.KAV....H...... 15 0 4 4 2 0 0 5 15 7 46% [T19I,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......G.....D.FSNK....R.KAV....H...L.. 15 4 4 5 1 0 1 0 15 13 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
...--S--.D........G.....D.FSNK....R.KAV........... 15 0 4 0 11 0 0 0 15 13 86% [L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNKR...R.KAV....H..S... 15 1 2 5 7 0 0 0 15 15 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....DIF.NK....R.KAV....H...... 15 0 12 0 2 0 1 0 15 14 93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S-L.D........G.....DTFSNK....R.KAV....H...... 15 0 15 0 0 0 0 0 15 13 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70L,S71X,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--..........G.....DTFSN.....R.KAV...SH...... 15 0 8 3 0 0 4 0 15 13 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D-Q......E.....HTFSNK.PS...KA.R...H...... 15 1 3 1 10 0 0 0 15 8 53% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,S477N,T478K,V483A,E484A,F490V,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,G798D,Q954H,N969K,S1003I]
..I--S--.D........G.....D.FSNK....R.KAV....H..SL.. 15 0 13 0 2 0 0 0 15 14 93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S,P1162L] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK....R.KAV.I.SH...... 15 0 2 13 0 0 0 0 15 14 93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.....D.FSNK....R.KAV....H.L.... 15 0 0 15 0 0 0 0 15 13 86% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....DTF.........KAV...SH...... 15 0 0 15 0 0 0 0 15 6 40% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D-.......G.....D.FSNK.A..R.KAV....H...... 15 2 0 7 4 0 0 2 15 11 73% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D........G.....DTFSNK....Q.KA.R...H.L.... 15 1 0 14 0 0 0 0 15 13 86% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S...D....T...G..D..D.FSNKR..DMKKR.....H...... 15 0 3 3 6 0 0 3 15 14 93% [T19I,L24-,P25-,P26-,A27S,G142D,M153T,N164K,V213G,H245N,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,N450D,L452M,N460K,S477N,T478K,E484R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KTV....H...... 14 1 3 6 4 0 0 0 14 12 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484T,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....D.YSNK......KA.R...H...... 14 0 5 1 8 0 0 0 14 10 71% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371Y,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
......--.D..E.....G.....DKFSNK.....KKA.....H...... 14 1 12 0 1 0 0 0 14 11 78% [H69-,V70-,G142D,K147E,V213G,G339D,R346K,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,H1101Y]
..I--S...D--......G.....D.FSNK....Q.KA.R...H.L.... 14 0 2 12 0 0 0 0 14 12 85% [T19I,L24-,P25-,P26-,A27S,G142D,Y144-,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S...D........G.....D.FSNK....Q.KA.....H.L.... 14 0 0 14 0 0 0 0 14 8 57% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K]
..I--S...D........GS....D.FSTKN...R.KA.R...H...... 14 0 0 0 14 0 0 0 14 13 92% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,S247N,Y248S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,K444N,L452R,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+K417T
..I--S...D........G.....D.FSNK....Q.KA.R...H.....L 14 3 11 0 0 0 0 0 14 10 71% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L]
..I--S--.D..N.I...G.....D.FSNK....R.KAV....H...... 14 1 11 1 1 0 0 0 14 14 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,M153I,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,E1258Q] Omicron_BA.4andBA.5
..I--S--ID........G.....DSFSNK....R.KAV....H...... 14 0 0 14 0 0 0 0 14 12 85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.F.........KAV...SH...... 14 0 0 14 0 0 0 0 14 6 42% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.FSNK..S.R.KAV....H...... 14 0 0 14 0 0 0 0 14 13 92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID-.......G.....D.FSNK...DR.KAV....H...... 14 0 0 14 0 0 0 0 14 14 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D.......-G.....D.FSNK....R.KAV....H...... 13 0 6 2 5 0 0 0 13 9 69% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,I210-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..ISH---ID........G.....D.FSNK....R.KAV....H...... 13 0 0 13 0 0 0 0 13 13 100% [T19I,L24S,P25-,P26H,A27-,Y28-,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSNK....R.KAV....H....L. 13 1 3 2 3 0 1 3 13 13 100% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263L] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSNK....Q.KA.R...H.L.L.. 13 0 7 6 0 0 0 0 13 11 84% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--I.........G.....D.FSN.....R.KAV....H...... 13 0 4 7 0 0 2 0 13 12 92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D......R.G.....D.FSNK....R.KAV....H..S... 13 0 0 13 0 0 0 0 13 12 92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,G181R,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.FI--S...D........G.....DTFSNK......KA.R...H...... 13 0 0 0 0 0 0 13 13 13 100% [L5F,T19I,L24-,P25-,P26-,A27S,I68T,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
..I--S--ID........G.....D.FSNK....R.KAV....H...L.. 13 0 0 12 1 0 0 0 13 7 53% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
..I--S--.D........G.F...D.FSNK....R.KAV...SH...... 13 0 0 13 0 0 0 0 13 11 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R..AV........... 13 0 13 0 0 0 0 0 13 5 38% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F.NK....R.KAV........... 13 0 13 0 0 0 0 0 13 8 61% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.FSNK....R.KAV.K..H...... 13 0 0 13 0 0 0 0 13 10 76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D..-.....G.....D.FSNK....R.KAV....H...... 13 1 9 2 0 0 0 1 13 12 92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147-,N148-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....V.FSNK....R.KAV....H...... 13 1 12 0 0 0 0 0 13 11 84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339V,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D..R.....G..S..DTFSNK....R.KAV....H...... 13 13 0 0 0 0 0 0 13 13 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147R,V213G,G257S,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I......D........G.....D.FSNK....R.KAV....H...... 13 0 0 0 13 0 0 0 13 10 76% [T19I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.FI--S--.D........G.....DIFSNK....R.KAV....H...... 12 0 9 3 0 0 0 0 12 12 100% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.IAV....H...... 12 0 4 8 0 0 0 0 12 11 91% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478I,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV...SH.L.... 12 5 0 6 0 0 0 1 12 7 58% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,D1163V] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSNKN...Q.KA.R...H.L.... 12 0 0 12 0 0 0 0 12 6 50% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S--.D-.......G.....DSFSNK....R.KAV....H...... 12 0 2 10 0 0 0 0 12 12 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FS........KAV....H...... 12 0 0 12 0 0 0 0 12 11 91% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
G.I--S--.D........G.....D.FSNK....R.KAV....H.L.... 12 0 0 12 0 0 0 0 12 11 91% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSN.......KAV........... 12 0 12 0 0 0 0 0 12 9 75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK......KAV........... 12 0 12 0 0 0 0 0 12 8 66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--ID......V.G.....D.FSNK....R.KAV....H...... 12 0 3 9 0 0 0 0 12 9 75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,G181V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSN.....R.KAV....HS..... 12 0 3 9 0 0 0 0 12 11 91% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A701S,N764K,D796Y,Q954H,N969K]
..I......D........G.....D.FSTK..S.Q.RA.R...H.....L 12 0 0 0 12 0 0 0 12 8 66% [T19I,S71F,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,G446S,L452Q,S477N,T478R,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L]
..I--S--.D........G.....D..................H...... 12 0 0 12 0 0 0 0 12 4 33% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....D.FST.......KA.R...H...... 11 0 7 2 2 0 0 0 11 5 45% [T19I,L24-,P25-,P26-,A27S,I68T,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D.Y......G.....D.FSNK....R.KAV....H..S... 11 1 3 4 3 0 0 0 11 11 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146Y,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
......--.D-.............D.L.NK..S...KA.RK..H...... 11 1 7 2 1 0 0 0 11 3 27% [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] Omicron_BA.1
..I--S...D........GS....D.FSNK...D..KA.R...H...... 11 3 2 1 5 0 0 0 11 10 90% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,Y248S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2
G.I--S-L.D........G.....D.FSNK....R.KAV....H...... 11 0 9 1 0 1 0 0 11 9 81% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70L,S71X,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D.....S..G.....D.FSTKN.....KA.R...H...... 11 0 0 2 7 0 0 2 11 8 72% [T19I,L24-,P25-,P26-,A27S,G142D,F157S,V213G,L244F,H245-,A264S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,K444N,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+K417T
..I--S--.D........G..V..D.FSNK....R.KAV....H...... 11 2 4 3 0 0 0 2 11 9 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257V,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV....R...... 11 1 4 6 0 0 0 0 11 10 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681R,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNK....R.KAV....H..S.L. 11 0 3 0 8 0 0 0 11 11 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S,P1263L] Omicron_BA.4andBA.5
G.I--S--.D........G.F...D.FSNK....R.KAV....H...... 11 1 2 6 1 0 1 0 11 9 81% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.F...D.FSNK...DR.KAV....H...... 11 0 0 11 0 0 0 0 11 11 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
A.I--S--.D........G.....D.FSNK....R.KAV....H...... 11 1 0 8 1 0 0 1 11 10 90% [V3A,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--ID........G.....D.FSNK....R.RAV....H...... 11 0 0 11 0 0 0 0 11 10 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F...........V....H...... 11 0 0 11 0 0 0 0 11 4 36% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D.....S..G.....D.FSNK....R.KAV....H...... 11 0 7 2 2 0 0 0 11 11 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,F157S,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...--.......G.....D.FSNK..S...KAP....H...... 11 5 1 3 2 0 0 0 11 10 90% [T19I,L24-,P25-,P26-,A27S,W64R,L141-,G142-,V143-,Y144-,V213G,A243-,L244-,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,S477N,T478K,E484A,F486P,S494P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1143L]
..I--S--.D........G.F...D.F.NK....R.KAV....H...... 11 0 9 1 0 0 1 0 11 9 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.FSNKN...R.KAV.K..H...... 11 0 0 3 8 0 0 0 11 8 72% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......G.....D.FSNK....R.KAV.I..H..S... 11 0 0 4 7 0 0 0 11 9 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S...D........G.....D.FSN.....M.KA.R...H...... 11 0 0 1 2 0 8 0 11 10 90% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452M,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+L452M
.FI--S--.D........G...A.D.FSNK....R.KAV....H...... 11 0 2 9 0 0 0 0 11 11 100% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T259A,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--..........G....ID.FSN.....R.KAV....H...... 11 0 11 0 0 0 0 0 11 9 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,V289I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....D.F.NKR...R.KAV....H...... 11 0 4 6 0 0 1 0 11 9 81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..R......D.....-..................R.K......R...... 10 2 7 1 0 0 0 0 10 2 20% [T19R,T95I,G142D,E156G,F157-,R158-,P384L,L452R,T478K,D614G,A653V,P681R,D950N] Delta
..I--S--.D.P......G.....D.FSNK....R.KAV....H...... 10 10 0 0 0 0 0 0 10 9 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146P,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......G...I.D.FSNK....R.KAV....H...... 10 0 1 8 1 0 0 0 10 9 90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,T259I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D.-......G.....DTFSNK....R.KAV...SH...... 10 1 0 9 0 0 0 0 10 10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D........G.....D.FSNK....R.KAV...DH...... 10 0 0 4 6 0 0 0 10 10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658D,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S...D-....S..G.....D.FSTKN.....KA.R...H...... 10 1 0 2 7 0 0 0 10 9 90% [T19I,L24-,P25-,P26-,A27S,G142D,Y144-,F157S,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,K444N,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+K417T
..I--S--.D........G.....D.FSNK....R.KAV....HV.S... 10 1 8 1 0 0 0 0 10 10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A701V,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........G.....DTFSNK....RSKAV...SH...... 10 0 5 5 0 0 0 0 10 8 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460S,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
G.I--S--.D........G.....D.FSNK....R.KAV....H...S.. 10 0 4 5 1 0 0 0 10 8 80% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
..I--S--.D........G...A.D.FSN.....R.KAV....H...... 10 0 5 4 0 0 1 0 10 10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T259A,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S...D........G.....D.FSNK....Q.KA.R...H.L..L. 10 0 0 10 0 0 0 0 10 9 90% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452Q,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S704L,N764K,D796Y,Q954H,N969K,P1263L] Omicron_BA.2+L452Q+S704L_BA.2.12.1
..I--S...D..ER.L.VG..S..H.F.NK..S..KKA.....H...... 10 0 0 1 9 0 0 0 10 5 50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,K417N,N440K,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.FSNK....R.KAV....H....L. 10 0 1 9 0 0 0 0 10 8 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1263L] Omicron_BA.4andBA.5
..I.----.D........G.....D.FSNK....R.KAV....H..S... 10 0 1 4 4 0 0 1 10 5 50% [T19I,P25-,P26-,A27-,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
..I--S--.D........W.....D.FSNK....R.KAV....H...... 10 2 2 5 1 0 0 0 10 10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213W,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
.FI--S...D........G.....D.FSTK......KA.R...H...... 10 0 0 2 8 0 0 0 10 9 90% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417T,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.2+K417T
..I--S--.D-.......G.F...D.FSNK....R.KAV....H...... 10 6 3 1 0 0 0 0 10 7 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
..I--S--.D-.......E.....D.FSNK....R.KAV....H...... 10 0 3 3 4 0 0 0 10 7 70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213E,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..L--S--ID........G.....D.FSNK....R.KAV....H...... 10 0 1 8 1 0 0 0 10 9 90% [T19L,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
G.I--S--.D........G.....D.FSNK....R.KAV........... 10 0 10 0 0 0 0 0 10 4 40% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N764K,D796Y,Q954H,N969K]
..I--S--.D........G.....DSFSNK....R.KAV...SH...L.. 10 10 0 0 0 0 0 0 10 10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N658S,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
..I--S--.D.....L..G.....D.F.NK....R.KAV....H...... 10 0 10 0 0 0 0 0 10 8 80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
..I--S--ID........G.....D.F..........AV....H...... 10 0 0 10 0 0 0 0 10 3 30% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K]
.FR......D-....-........D.FSNK..D..KKA.....H...... 10 0 10 0 0 0 0 0 10 6 60% [L5F,T19R,P25L,G142D,V143-,Y144-,Y145D,E156G,F157-,R158-,N211-,L212I,D215Y,A243-,L244-,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,N460K,S477N,T478K,E484A,S494P,Q498R,N501Y,Y505H,D614G,H655Y,P681H,N764K,D796Y,Q954H,N969K]
Download
last modified: Mon Aug 1 18:21 2022
GISAID data provided on this website is subject to GISAID's Terms and Conditions
Questions or comments? Contact us at seq-info@lanl.gov.
Questions or comments? Contact us at seq-info@lanl.gov.
