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COVID-19 Viral Genome Analysis Pipeline
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XSpike

eXplore the Spike protein sequence in the SARS CoV-2 virus

Last update: Mar 30, 2023

Dates of current data

Delta and Omicron Variants
Global
Wuhan reference
Early 2021 Variants color key
Delta Variants color key
Delta Omicron Variants color key

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Evaluating 213784 sequences of length 1670
Sampled from 2023-01-29 to 2023-03-27.
Specified Date Range: ['2023-01-29', '2023-03-30']
Highest entropy sites for: Global
  Site Entropy
   486  1.1472
   146  0.8583
   213  0.7494
   445  0.7340
   183  0.7020
   252  0.6985
   452  0.6980
    83  0.6978
   368  0.6927
   444  0.6850
   490  0.6828
   144  0.6706
   446  0.6465
   339  0.6413
    69  0.6142
    70  0.6065
   257  0.5357
   147  0.5193
   157  0.4897
   152  0.4592
   210  0.4306
   346  0.3338
   460  0.2920
   356  0.2125
   408  0.1556
   185  0.1440
   417  0.1276
   478  0.1035
   248  0.0918
   613  0.0903
   253  0.0804
   477  0.0753
   484  0.0686
     5  0.0655
   883  0.0638
   153  0.0626
   142  0.0559
   245  0.0522
   215  0.0517
   440  0.0516
  1020  0.0491
    19  0.0481
   182  0.0476
   521  0.0469
  1162  0.0447
    27  0.0437
   621  0.0436
    24  0.0431
   251  0.0422
   323  0.0404


Most highly correlated site-pairs for: Global
               cramerV  mutInfo
   213    183   0.3514   0.6645
   183    368   0.5723   0.6629
   213    368   0.5709   0.6586
   445    368   0.5958   0.6577
   183     83   0.3737   0.6549
   445    183   0.3491   0.6539
    83    368   0.5714   0.6528
   213     83   0.3730   0.6526
   146    183   0.3285   0.6526
   213    445   0.3480   0.6491
   146     83   0.3717   0.6475
   146    213   0.3475   0.6472
   146    368   0.5673   0.6468
   445     83   0.3718   0.6425
   146    445   0.3264   0.6363


    27     24   0.7294   0.0375
   157     27   0.6306   0.0240
   478    477   0.5862   0.0283
   452    444   0.5772   0.4200
   452    490   0.5669   0.6327
   252    368   0.5595   0.6114
   477    484   0.5511   0.0229
   486    452   0.5488   0.5863
   452    446   0.5416   0.3666
   157    152   0.5380   0.3941
   486    368   0.5235   0.5178
   486    356   0.5188   0.1776
   452    368   0.5111   0.4430
   486    490   0.5105   0.5765
   445    444   0.4951   0.3127


Most common patterns for local area, where Local = Global
                                                11
       1111111111222222222333334444444444444566801
 1226784444555888111445555234560144445677889212826
59479032467237235035581237396688704562078460131302
LTLAHVVGYHKWMFKQNIVDHYPGDGTGRKLRKNKVGLNSTEFFPQPTAP  Global     UK  Eu-UK  NAmer   Asia Africa  SAmer  Ocean   Local  Exact  Pct [Context]
                                                    213784  28609  59332  84322  31302   1501   1905   6813  137191 <----------- Totals
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......   49978   6028   8655  32994   1741    214     41    305   49978  36422  72% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAV.......    9861    519   1992   5683   1556     13     31     67    9861   6236  63% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKT..RKNKAV.......    6243   1014   3005   1701    388     10     17    108    6243   3822  61% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HTT.SNK..S.KNKA.S......    6109    156    679    281   4852      0      2    139    6109   3351  54% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS.......    5380   2199   1652    615    683      1      4    226    5380   3167  58% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNK...R.NKAV.......    5040     89    706    433   3782      4      1     25    5040   2657  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L..DVG......S.HT..SNKT.SRKNKAS.......    3316   2226    655    150    125      5      3    152    3316   2088  62% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK...R.NKAV.......    3136     10    119    107   2895      0      0      5    3136   1876  59% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..SNK..S.KNKAPS......    2619    398    589    281    470      0      0    881    2619   1859  70% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-K.....E..E....V...HT.ISNK.PS.KNKAPS......    2455    242    429   1644     62      3      2     73    2455   1741  70% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNKT..RKNKAV.......    2221     71    322   1583    214      2      2     27    2221   1009  45% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........D...SNKT..RKNKAV.......    1751    141    605    596    324      2     30     53    1751    884  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D...SNK...R.NKAV.....S.    1058      0     10      2   1046      0      0      0    1058    771  72% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.I-S--.D..........G......D.DT..SNK...R.NKAV.......     758      0      4      0    754      0      0      0     758    615  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.IS.K.PS.KNKAPS......     738      0    382    329      9      0     18      0     738    497  67% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..D.....DT..SNKT..RKNKAV.......     731     93    529     80     17      0      1     11     731    528  72% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKASS......     686     38    132    398    109      2      1      6     686    398  58% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-...I.....G........DT..SNKT..RKNKAV.......     652     50     51    516     18      0      0     17     652    284  43% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,M153I,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.I.NK.PS.K.KAPS......     626      0    626      0      0      0      0      0     626    407  65% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS.H....     624     81    428     56     32      0      0     27     624    479  76% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..I.......G........DT..SNKT..RKNKAV.......     623     16    222    369     14      0      0      2     623    279  44% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......     585     63     77    420     14      3      0      8     585    412  70% [L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G.....G..DT..SNKT..RKNKAV.......     582    398    120     54      9      0      0      1     582    209  35% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,E1144Q] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..SNK..SRKNKAI.......     544     22     66     46     66      0      0    344     544    330  60% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,N460K,S477N,T478K,E484A,F486I,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....L....G........D...SNKT..RKNKAV.......     540     59    301    167     13      0      0      0     540    375  69% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD.-.....E..E....V...HT.ISNK.PS.KNKAPS......     538     14    252    197     59      0      0     16     538    359  66% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145X,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....L....G........DT..SNKT..RKNKAV.......     536     92    320    114      7      0      0      3     536    286  53% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L..DVG......S.HT..SNKT.SRKNKAS..H....     520    322     62    109      2      0      0     25     520    315  60% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,L176F,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS...I..     455     85     53    305      7      0      0      5     455    361  79% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS....I..     429    244     58     92      5      0      0     30     429    307  71% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] 
.I-S--.D-.........G........D...SNKN..RKNKAV.......     424     34    198    112     74      0      1      5     424    283  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNRAPS......     413     29     27    218    123      0      0     16     413    123  29% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478R,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E........HT.ISNK.PS.KNKAPS......     398      4     18    364     10      1      1      0     398    234  58% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..E.......G........DT..SNKT..RKNKAV.......     371     34     77    202     56      0      1      1     371    218  58% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.I.NK.PS.KNKAPS......     337      0    115     58     85     39     40      0     337    218  64% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V..IHT.ISNK.PS.KNKAPS......     305     28    175     97      4      0      0      1     305    197  64% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,T323I,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..H.....DT..SNKT..RKNKAV.......     292     21     72    197      1      0      0      1     292    234  80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248H,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNK...R.NKAV.......     280     10    121     37    108      1      0      3     280    132  47% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..Q.......G........D...SNK..DRKNKAV.......     280      0      0      0    280      0      0      0     280    197  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147Q,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..N.......G........DT..SNKT..RKNKAV.......     271    174     56     25     13      0      0      3     271    120  44% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT...NKT..RKNKAV.......     247      0    241      2      0      0      4      0     247    121  48% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS..S...     243     14     29    199      1      0      0      0     243    174  71% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNKN..RKNKAV.......     210      7    101     86     14      0      2      0     210     78  37% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K150E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D....T.....G.N....D.D...SNKR..MKNKR........     208      3     42     26    134      0      0      3     208    125  60% [T19I,L24-,P25-,P26-,A27S,G142D,M153T,N164K,V213G,H245N,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,N450D,L452M,N460K,S477N,T478K,E484R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPSS.....     208      6    168     28      4      0      0      2     208    136  65% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,I410V,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....G..HT.ISNK.PS.KNKAPSS.....     207     56     41     32     74      0      1      3     207    100  48% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAV..H....     201      7     87     91     13      1      2      0     201    163  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-QI....E..E....V...HT.ISNK.PS.KNKAPS......     201      0      1    200      0      0      0      0     201    178  88% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,K147I,Q183E,V213E,G252V,T284I,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK...R.NKAV....I..     200      0      2      2    196      0      0      0     200     91  45% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT...NKT..RKNKAV.......     185      0    174      6      3      0      2      0     185    106  57% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT..S.KT..RKNKAV.......     183      0    169      7      5      0      2      0     183    102  55% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNK...R.NKAV.....S.     182      0      4      1    177      0      0      0     182    160  87% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HTT.SNK.AS.KNKA.S......     175      0      2      0    172      0      0      1     175    124  70% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........D...SNKT..RKNKAA.......     174      5     23    146      0      0      0      0     174    141  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNK..S.KNKAPS.....S     170      0    166      1      3      0      0      0     170    132  77% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] 
.I-S--.D..........G..S.....D...SNKT..RKNKAV.......     166      0      5    158      3      0      0      0     166     59  35% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248S,+248RWMD,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD.Q.....E..E....V...HT.ISNK.PS.KNKAPS......     165      0     24    125     15      0      0      1     165    124  75% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..S.....DT..SNKT..RKNKAV.......     163      0    137     25      1      0      0      0     163     75  46% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248S,+248AED,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G...L....DT..SNKT..RKNKAV.......     162     22     34     70      6     28      1      1     162     50  30% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S--.D..........G........DT..SNKT..RKNKAV.......     161      2     22    110     27      0      0      0     161     99  61% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.......D.G........DT..SNKT..RKNKAV.......     156      4    110      8     34      0      0      0     156     66  42% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,N185D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D-Q.....E..E....V...HT.ISNK.PS.KNKAPS......     151      0     89     57      3      2      0      0     151    110  72% [T19I,L24-,P25-,P26-,A27S,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..EH...V...HT.ISNK.PS.KNKAPS......     150     45     64     31      9      1      0      0     150    107  71% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D215H,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I.....D-....-.....H...........SNK..SM.NKAP.......     144      1      9      5     67      0      0     62     144     76  52% [T19I,P25S,G142D,Y144-,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452M,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N703I,N764K,D796Y,Q954H,N969K] 
.I-S--.D......I...G........DT..SNKT..RKNKAV.......     143      0      3    136      4      0      0      0     143     92  64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182I,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.....G..DT..SNKT..RKNKAV.......     142     36     14     54     38      0      0      0     142     98  69% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.N......DT..SNKT..RKNKAV.......     141      4      8    128      1      0      0      0     141    105  74% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,H245N,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKT..RKNKAV..H....     136     30     93     10      1      0      0      2     136    103  75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.H.T.SNK..S.KNKA.S......     135      5     43     13     71      0      0      3     135     77  57% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N450D,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT..NK..S.KNKA.S......     135      0     34      0    100      0      1      0     135     22  16% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....G..HT.ISNK.PS.KNKASS......     129      4     17     94      5      2      7      0     129     70  54% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L....-......S.HT..SNKT.SRKNKAS.......     124     50     34      3      5      0      0     32     124     80  64% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,+209V,N211G,L212-,V213-,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L..DVG......S.HTT.SNK..S.KNKA.S......     115      2     32      1     67      0      0     13     115     52  45% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,S494P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VGG.....S.HT..SNKT.SRKNKAS..H....     115     16     29      7      0      0      0     63     115     71  61% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,D215G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....S....G........DT..SNKT..RKNKAV.......     111      1      7    103      0      0      0      0     111     99  89% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157S,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D.....L....G........DT..SNK...R.NKAV.......     110      0      0      2    108      0      0      0     110     78  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..S.KT..RKNKAV.......     107      0     93     11      0      0      3      0     107     56  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........D...SNK...R.NKAV.......     106      3     16      6     81      0      0      0     106     56  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L....-......S.HTT.SNK..S.KNKA.S......     105     42     42     11      9      0      0      1     105     37  35% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,M177T,+209V,N211G,L212-,V213-,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,H1101Y] 
.I-S..AD-Q.....E..E........HT.I........NKAPS......     105      0      4    101      0      0      0      0     105     41  39% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.-........G........DT..SNKT..RKNKAV.......     104      5     28     67      4      0      0      0     104     76  73% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I.....D-....-.....H........S..SNK..SR.NKAP.......     102      0      0      0      0      0      0    102     102     87  85% [T19I,P25S,G142D,Y144-,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N703I,N764K,D796Y,Q954H,N969K] 
FI-S--.D-.........G........DT..SNKT..RKNKAV.......     101     20     50     20      9      0      0      2     101     55  54% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..A.-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      98      0     61     31      0      1      5      0      98     71  72% [T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS..H....      97     12     77      4      0      0      0      4      97     36  37% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,D867N,Q954H,N969K] 
.I-S...D..ER.L...VG......-.HT..SNKT.SRKNKAS.......      94     47     13     16      6      0      0     12      94     53  56% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,+254P,G257-,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNK.A.R.NKAV.......      93      0     40     26     22      1      0      4      93     41  44% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D....T.....G.N....D.D...SNKR.SMKNKRS.......      91      0      3     61     18      0      0      9      91     54  59% [T19I,L24-,P25-,P26-,A27S,G142D,M153T,N164K,V213G,H245N,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,G446S,N450D,L452M,N460K,S477N,T478K,E484R,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.LN..VG......S.HT..SNKT.SRKNKAS.......      91     53     35      2      1      0      0      0      91     58  63% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,K182N,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT..SNKT..RKNKAV....I..      88     19     41     24      4      0      0      0      88     65  73% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E.Y..V...HT.ISNK.PS.KNKAPS......      87      3     25     47      8      3      0      1      87     69  79% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,H245Y,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.H...SNKT.SRKNKA........      87      0      1      1     85      0      0      0      87     64  73% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D574V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..-.....DT..SNKT..RKNKAV..H....      86      2     82      0      2      0      0      0      86     65  75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,+246N,Y248-,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG........HTT.SNK..S.KNKA.S......      85      0      3      0     82      0      0      0      85     28  32% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK.A.R.NKAV.......      83      0      8     28     47      0      0      0      83     49  59% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D...SNKM..R.NKAV.......      83      0      1      5     77      0      0      0      83     38  45% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444M,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D.-........G........D...SNKT..RKNKAV.......      82      5     32     45      0      0      0      0      82     35  42% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E...SV...HT.ISNK.PS.KNKAPS......      81     31     34     16      0      0      0      0      81     55  67% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,P251S,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS...S...      81     64      5     10      1      0      0      1      81     67  82% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D--........G........DT..SNKT..RKNKAV.......      79      2     17     59      1      0      0      0      79     52  65% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKT..RKNKAV......S      77      5      7     62      3      0      0      0      77     58  75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPST.....      75      0     10     63      2      0      0      0      75     33  44% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521T,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DS..SNK...R.NKAV.......      75      1     21     24     29      0      0      0      75     49  65% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..A.-Q.....E..E....V...HT.IS.K.PS.KNKAPS......      74      0     68      6      0      0      0      0      74     61  82% [T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D..........G........DT..SNK...R.NKAV.......      73      7     13      4     48      0      0      1      73     31  42% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.I........NKAPS......      72      0      0     72      0      0      0      0      72     54  75% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G.Y......DT..SNKT..RKNKAV.......      71      9     14     42      6      0      0      0      71     47  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,H245Y,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..E.......G........D...SNKT..RKNKAV.......      71      1     51     10      6      0      0      3      71     56  78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKR..R.NKAV.......      71     17     34     13      7      0      0      0      71     22  30% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.......D.G........DT..SNKT..RKNKAV..H....      71     47     16      2      3      1      0      2      71     55  77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,N185D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SNKT..RKNKAV....I..      70     15     19     11     24      0      1      0      70     57  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-....L....G........DT..SNKT..RKNKAV..H....      69      0      6     60      2      0      1      0      69     49  71% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT...NK...R.NKAV.......      69      0     67      1      1      0      0      0      69     48  69% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-......E..E....V...HT.ISNK.PS.KNKAPS......      68      3     21     36      7      0      0      1      68     36  52% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.-........G........D...SNKTA.RKNKAV..H....      66     60      2      2      1      0      0      1      66     29  43% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y145L,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,V445A,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,I770M,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.L-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      65      4     13     48      0      0      0      0      65     48  73% [T19L,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNK..S.KNKAPS..S...      64     31      0      0      1      0      0     32      64     28  43% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G.....G..DT..SNKT..RKNKAV......S      64     57      7      0      0      0      0      0      64     52  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,E1144Q,P1162S] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS.....L      63     18      9     33      3      0      0      0      63     27  42% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] 
.I-S--.D..........G........DT..SNKT..RKNRAV.......      61      0      6     39      9      5      0      2      61     28  45% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT..SNK.A.R.NKAV.......      60      0      7     40     13      0      0      0      60     42  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,A262S,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..E...N...G........DT..SNKT..RKNKAV.......      59     36     23      0      0      0      0      0      59     49  83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,K182N,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKRA.R.NKAV.......      59      0      6     28     24      0      0      1      59     45  76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,P209L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S...D..ER.L...VG......S.HTT.SNK..S.KNKA.S......      58      1     10      1     40      0      1      5      58     26  44% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..-L....DT..SNKT..RKNKAV.......      58      5     52      0      0      0      0      1      58     37  63% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,+246N,Y248-,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G......-.DT..SNKT..RKNKAV.......      58     53      3      1      1      0      0      0      58     43  74% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,+255P,G257-,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKASS...I..      57      2     40     12      2      1      0      0      57     27  47% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] 
.I-S..AD-Q...L.E..E....V...HT.ISNK.PS.KNKAPS......      57      8      5     38      6      0      0      0      57     37  64% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,F157L,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKTA.RKNKAV.......      57      3     17     33      0      0      0      4      57     33  57% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,V445A,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S--.D-.........G........D...SNKT..RKNKAV.......      55      0     16     13     23      0      0      3      55     23  41% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..SNKT..RKNKAV.......      55     33     16      5      1      0      0      0      55     33  60% [T19I,L24-,P25-,P26-,A27S,D111N,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,T678I,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK..S.KNKAPS......      54      0      0     54      0      0      0      0      54     41  75% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.L........G........D...SNKT..RKNKAV.......      54      0      7     43      4      0      0      0      54     40  74% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......SAHT..SNKT.SRKNKAS.......      53     31     18      1      3      0      0      0      53     42  79% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,T323A,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.....L....G........DT..SNKT..RKNKAV.......      53      1      6     42      4      0      0      0      53     16  30% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........GY.......DT..SNKT..RKNKAV.......      53      1      3     49      0      0      0      0      53     42  79% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,D215Y,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.K....S......      53      0      0     53      0      0      0      0      53     41  77% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..N.......G........DT..SNK...R.NKAV.......      52     20     19      7      6      0      0      0      52     32  61% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..-.......G........D...SNK...R.NKAV......S      52      0     52      0      0      0      0      0      52     37  71% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147-,N149-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
.I-S--.D-.........G........DS..SNKT..RKNKAV.......      51     15     25     10      1      0      0      0      51     27  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........D....NKT..RKNKAV.......      51      0     48      0      1      0      2      0      51     21  41% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.R.....D...L.-....G.....G..DT..SNK..DR.NKAP...S...      50      1     49      0      0      0      0      0      50     18  36% [L18F,T19R,R21G,T95I,G142D,W152L,E156G,F157-,R158-,F186L,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,A706V,N764K,D796Y,Q954H,N969K,T1117I,D1153Y] 
.I-S--.D......E...G...L....DT..SNKT..RKNKAV......L      49      0      6     41      2      0      0      0      49     39  79% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182E,V213G,Q218H,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
.I.-..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      48      8      7     29      2      0      0      2      48     34  70% [T19I,P25-,P26-,A27-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD.K.....E..E....V...HT.ISNK.PS.KNKAPS......      47      0      7     37      2      0      0      1      47     18  38% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........D...SNKM..RKNKAV.......      47      6     14     17     10      0      0      0      47     24  51% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444M,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S...D..ER.L...VG......S.HT..SNK..S.KNKAPS......      47      2      7      0      3      0      0     35      47     37  78% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNK...R.NKAV.......      47      0     46      1      0      0      0      0      47     38  80% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNK..SRKNKAS.......      47     11     23      6      7      0      0      0      47     17  36% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-K.....E..E....V...HT.I.NK.PS.K.KAPS......      47      0     47      0      0      0      0      0      47     32  68% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS.....S      46      6      5     35      0      0      0      0      46     32  69% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] 
.I-S..AD-K.....E..E....V...HT.IS.K.PS.KNKAPS......      45      0     28     15      0      0      2      0      45     28  62% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G...L....DT..SNKT..RKNRAV.......      45      0     31      0      0     11      0      3      45     28  62% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,N856S,Q954H,N969K] 
.I-S--.D--........G........D...SNK...R.NKAV.......      44      4     13      0     27      0      0      0      44     20  45% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--FD..........G........DT..SNK...R.NKAV.......      44      0      0      0     44      0      0      0      44     26  59% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V83F,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,C1243F] Omicron_BA.4andBA.5
.I-S--.D..I.......G........D...SNKT..RKNKAV.......      43      1     29     12      1      0      0      0      43     12  27% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,V213G,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S...D..ER.L..DVG......S.HT..SNKT.SRKNKAS.......      43     39      2      0      1      0      0      1      43     29  67% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--..-.........G........DT..SNKT..RKNKAV.......      43      0     41      0      0      0      2      0      43     24  55% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.V-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      42      0      1     40      0      0      0      1      42     38  90% [T19V,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNKM.SRKNKAS.......      42      6      1     23      5      0      0      7      42     21  50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444M,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D1199N] 
.I-S..AD-Q.....E..E....V...HI.ISNK.PS.KNKAPS......      42      0      4     37      1      0      0      0      42     28  66% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346I,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAA.......      41      3     12     18      6      2      0      0      41     25  60% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT...NKT..RK.KAV.......      41      0     41      0      0      0      0      0      41     19  46% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT.S.K..S.KNKA.S......      40      0      7      1     32      0      0      0      40     15  37% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT..SNKT..RKNRAV.......      39      1      3     32      2      1      0      0      39     30  76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ERIL...VG......S.HTT.SNK..S.KNKA.S......      39      0      3     22     14      0      0      0      39     32  82% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,M153I,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT...NKT.SRKNKAS.......      39      0     27      0     12      0      0      0      39     16  41% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--............G........DT..SNKT..RKNKAV.......      39      0     33      2      4      0      0      0      39     23  58% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..SNKT.SRKNKA........      39     21      6      1      9      0      0      2      39     27  69% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D....NKN..RKNKAV.......      39      0     37      0      1      0      1      0      39     32  82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K150E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....G..HT.ISNK.PS.KNKAPS......      38      7     26      3      2      0      0      0      38     20  52% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISN..PS.KNKAPS......      38      0     18     20      0      0      0      0      38     25  65% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS....V.      37      4      3     30      0      0      0      0      37     27  72% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020V] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNIAPS......      37      6      0     31      0      0      0      0      37     32  86% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478I,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D..........G........D...SNKT..RKNKAV.......      37      0      3     29      4      0      0      1      37      9  24% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..N.T.....G.N....D.D...SNKR.SMKNKRS.......      37      0      0      2     35      0      0      0      37     29  78% [T19I,L24-,P25-,P26-,A27S,G142D,K147N,M153T,N164K,V213G,H245N,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,G446S,N450D,L452M,N460K,S477N,T478K,E484R,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT.SNK..S.KNKASS......      37     14     18      4      1      0      0      0      37     19  51% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
..-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      37      1     16     18      1      0      0      1      37     19  51% [L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK..DR.NKAV.......      37      0      0      0     37      0      0      0      37     25  67% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.....E...G...L....DT..SNKT.RRKNKAV.......      36     36      0      0      0      0      0      0      36     28  77% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,K182E,V213G,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446R,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L.P.VG......S.HT..SNKT.SRKNKAS.......      36      8      1      0     27      0      0      0      36     31  86% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,Q183P,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..D.....DT...NKT..RKNKAV.......      36      0     36      0      0      0      0      0      36     20  55% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........D....NKN..RKNKAV.......      36      0     34      0      0      0      2      0      36     24  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SY.AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      35      3      4     28      0      0      0      0      35     27  77% [T19I,L24-,P25-,P26-,A27S,H69Y,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPP......      35      5      5     25      0      0      0      0      35     16  45% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISN......NKAPS......      35      0      0     35      0      0      0      0      35     17  48% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....L....G........D...SNKN..RKNKAV.......      35      2      1     29      1      0      0      2      35     26  74% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,G181V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.K...........      34      0      5     25      4      0      0      0      34      9  26% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G.Y......DT..SNKT..RKNKAV.......      34      6     14     12      2      0      0      0      34     22  64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,H245Y,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G...S....D...SNK...R.NKAV.......      34      0      0      0     34      0      0      0      34     28  82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,P251S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SNK...R.NRAV.......      34      9      5      1      6     13      0      0      34     17  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,T747I,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E........HT.ISNK.PS.KNKASS......      33      0     10     16      4      2      0      1      33      7  21% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D..........G........D...SNK...R.NKAV.......      33      0      3      0     30      0      0      0      33     24  72% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.L-S--.D..........G........DT..SNK...R.NKAV.......      33      1      1      0     31      0      0      0      33     24  72% [T19L,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D...L......G........D...SNKT..RKNKAV.......      33      0      0     32      0      0      0      1      33     13  39% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152L,V213G,S256L,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,E619K,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........D...S.KT..RKNKAV.......      32      0     30      2      0      0      0      0      32     18  56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNKTA.RKNKAV.......      32      1      1     30      0      0      0      0      32     26  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,V445A,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S.............VG......S.HTT.SNK..S.KNKA.S......      32      0      0      0     32      0      0      0      32     18  56% [T19I,L24-,P25-,P26-,A27S,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.I..K.PS.KNKAPS......      32      0     16     14      2      0      0      0      32      9  28% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.-........G........D...SNKT..RKNKAV..H....      32     28      4      0      0      0      0      0      32     15  46% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y145L,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D...SN....R.NKAV.......      32      0     29      1      2      0      0      0      32     23  71% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,A260X,G261X,A262X,A263X,A264X,Y265X,Y266X,V267X,G268X,Y269X,L270X,Q271X,P272X,R273X,T274X,F275X,L276X,L277X,K278X,Y279X,N280X,E281X,N282X,G283X,T284X,I285X,T286X,D287X,A288X,V289X,D290X,C291X,A292X,L293X,D294X,P295X,L296X,S297X,E298X,T299X,K300X,C301X,T302X,L303X,K304X,S305X,F306X,T307X,V308X,E309X,K310X,G311X,I312X,Y313X,Q314X,T315X,S316X,N317X,F318X,R319X,V320X,Q321X,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DI..SNK...R.NKAV.......      31      1      8      6     16      0      0      0      31     25  80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......-.HTT.SNK..S.KNKA.S......      31      0      5      1     25      0      0      0      31     11  35% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,+255L,G257-,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAV...H...      31      0      4     27      0      0      0      0      31     26  83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,P621H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D......E...G...L....DT..SNKT..RKNKAV..H...L      31      2     24      0      0      0      0      5      31     18  58% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182E,V213G,Q218H,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
.I-S..AD-K.....E..E....V...HT.ISNK.PS.KNKASS......      30      0      4     14     10      0      2      0      30     17  56% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....-..HT.ISNK.PS.KNKAPS......      30      0      0     28      2      0      0      0      30     27  90% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,+251V,D253-,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAV...S...      30      1      8     21      0      0      0      0      30     19  63% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..SNK..N.KNKAPS......      30      0      1      0      2      0      0     27      30     27  90% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446N,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D......E...G........DT..SNKT..RKNKAV.......      30      6     16      6      1      1      0      0      30     23  76% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182E,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS..NKAPS......      30      0     16     13      1      0      0      0      30     22  73% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..........NKAV.......      30      0      0     30      0      0      0      0      30     15  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....................NKAPS......      30      0      0     30      0      0      0      0      30     14  46% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..EG...V...HT.ISNK.PS.KNKAPS......      29      7      4     18      0      0      0      0      29     24  82% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D215G,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.SS.KNKAPS......      29      6     17      3      3      0      0      0      29     19  65% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445S,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G.....G..D...SNKT..RKNKAV.......      29      0      9      5     15      0      0      0      29     13  44% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,D253G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L..DVG......S.HT..SNKT.SRKNKAS....I..      29      1      0      1      0      0      0     27      29     25  86% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKASP......      29      3      7      1     16      0      0      2      29     14  48% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D...R......G........DT..SNKT..RKNKAV.......      29      1      4     21      1      2      0      0      29     23  79% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152R,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D....NK...R.NKAV.......      29      0     18      0     11      0      0      0      29      6  20% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT...NKT..RK.KAV.......      29      0     29      0      0      0      0      0      29     12  41% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,N969K] 
.I-S--.D-...IL....G........DT..SNKT..RKNKAV.......      28      0     28      0      0      0      0      0      28     21  75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,M153I,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,V1264L] Omicron_BA.4andBA.5
FI-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS.......      28     10     10      2      2      0      0      4      28     22  78% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.R...E..E....V...HT.ISNK.PS.KNKAPS......      28      2      9     16      1      0      0      0      28     25  89% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,W152R,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..ADQ-.....E..E....V...HT.ISNK.PS.KNKAPS......      28      2     11     14      1      0      0      0      28     17  60% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,V143D,Y144Q,Y145-,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SY..D..ER.L..DVG......S.HT..SNKT.SRKNKAS.......      28     28      0      0      0      0      0      0      28     27  96% [T19I,L24-,P25-,P26-,A27S,H69Y,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,I569V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT..SNK.PS.KNKAPS......      27      0     23      3      1      0      0      0      27     10  37% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......SIHT..SNK..S.KNKAPS......      27     21      5      1      0      0      0      0      27     25  92% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,T323I,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..FD..ER.L...VG......S.HTT.SNK..S.KNKA.S......      27      0      0      0     27      0      0      0      27     26  96% [T19I,L24-,P25-,P26-,A27S,V83F,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..A--Q.....E..E....V...HT.ISNK.PS.KNKAPS......      27      4      2     20      1      0      0      0      27     19  70% [T19I,L24-,P25-,P26-,A27S,V83A,L141-,G142-,V143-,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..D.....DT..SNKT..RKNKAV......S      27      0     27      0      0      0      0      0      27      8  29% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
.I-S--.D..........G.......IDT..SNKT..RKNKAV.......      27      4      5     10      1      0      0      7      27     16  59% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T323I,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.......T.G........DT..SNKT..RKNKAV.......      27      4     16      6      1      0      0      0      27     13  48% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,N185T,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,E471Q,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ERIL...VG......S.HT..SNKT.SRKNKAS.......      26     10      2      8      5      0      0      1      26     16  61% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,M153I,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S..AD-K.....E..E....V...HT.ISNK.PS.KNKAPS......      26      7      5     14      0      0      0      0      26     22  84% [L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISSK.PS.KNKAPS......      26      5     20      1      0      0      0      0      26     25  96% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SF-.D..........G........DT..SNKT..RKNKAV.......      26      0      3     22      1      0      0      0      26     18  69% [T19I,L24-,P25-,P26-,A27S,H69F,V70-,S71-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D....NKT..RKNKAV.......      26      0     26      0      0      0      0      0      26      9  34% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........D...SNKT..RKNRAV.......      25      2      1     12      9      0      0      1      25     15  60% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478R,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SF-.D..........G........D...SNKN..RKNKAV.......      25      1     22      0      2      0      0      0      25     15  60% [Q14H,T19I,L24-,P25-,P26-,A27S,H69F,V70-,S71-,G142D,K150E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD.-.....E..E....V...HT.ISNK.PS.KNKAPS.H....      25      1     23      0      0      0      0      1      25     23  92% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145X,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT..SNKT..R.NKAV.......      25      0     23      2      0      0      0      0      25     14  56% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..........G..N.....DT..SNK...R.NKAV.....S.      25      0      1     24      0      0      0      0      25     20  80% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,Y248N,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.L-S--.D..........G........DT..SNKT..RKNKAV.......      25      1      5      3     16      0      0      0      25      8  32% [T19L,L24-,P25-,P26-,A27S,H69-,V70-,G142D,L176F,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT.SNK..S.KNRA.S......      24      0      6      0     18      0      0      0      24     21  87% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478R,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.......Y.G........DT..SNKT..RKNKAV.......      24      0      6     18      0      0      0      0      24     20  83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,N185Y,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..S.KT.SRKNKAS.......      24      0     23      0      1      0      0      0      24     14  58% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAV......L      24      0     11     13      0      0      0      0      24     17  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SNKT..RKNQAV.......      24      0      0     22      0      2      0      0      24     17  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478Q,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E........HT.I...................      24      0      2     22      0      0      0      0      24      4  16% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VE......S.HT..SNKT.SRKNKAS.......      24     22      2      0      0      0      0      0      24     18  75% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213E,G257S,G339H,R346T,A348S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..ADK-.....E..E....V...HT.ISNK.PS.KNKAPS......      23      0     23      0      0      0      0      0      23     11  47% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144K,Y145-,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNKT..RKNKAV...S...      23      0      1     21      1      0      0      0      23     12  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,P621S,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..SNK..SRKNKA........      23      0      2      0      4      0      0     17      23     16  69% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,L452R,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNK.AS.KNKAPS......      23      4      6      6      7      0      0      0      23      8  34% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D........D.G........DT..SNKT..RKNKAV.......      23      1      3      5     13      0      0      1      23     19  82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,N185D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.R.....D...L.-....G........D...SNK..DR.NKAP...S...      23      0     22      1      0      0      0      0      23     16  69% [L18F,T19R,R21G,T95I,G142D,W152L,E156G,F157-,R158-,F186L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,A706V,N764K,D796Y,Q954H,N969K,T1117I] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKA.S......      23      0      7     14      2      0      0      0      23     16  69% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT...NK...R.NKAV.......      23      0     23      0      0      0      0      0      23     12  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G...H....D...SNKT..RKNKAV.......      23      1      4     18      0      0      0      0      23     10  43% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,P251H,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I.---AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      23      0      0      0     23      0      0      0      23     21  91% [T19I,P25-,P26-,A27-,H69-,V70-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D...L......G........DT..SNKT..RKNKAV.......      22      0     11     11      0      0      0      0      22     14  63% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VE......S.HTT.SNK..S.KNKA.S......      22      0      5      0     17      0      0      0      22     14  63% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213E,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNKT..RKNKAV......S      22      0      5     17      0      0      0      0      22     16  72% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
.R.....D...L.-....G.....G..DT...NK..DR.NKAP...S...      22      0     22      0      0      0      0      0      22     12  54% [L18F,T19R,R21G,T95I,G142D,W152L,E156G,F157-,R158-,F186L,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,A706V,N764K,D796Y,Q954H,N969K,T1117I,D1153Y] 
.I-S..AD-Q.....E..E....V...HT.IGNK.PS.KNKAPS......      22      0     18      4      0      0      0      0      22     21  95% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408G,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...DT.ISNK.PS.KNKAPS......      22      0     22      0      0      0      0      0      22     13  59% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339D,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...D...SNK.PS.KNKAPS......      21      0     21      0      0      0      0      0      21      7  33% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-K.....E..E........HT.ISNK.PS.KNKAPS......      21      0      7     14      0      0      0      0      21     14  66% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT.SNK..S.KNKA.S.....L      21      1      0      1     19      0      0      0      21     15  71% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] 
.I-S--.D-.........G........D...SNKT..RKNKAV..H....      21      8      4      6      1      0      0      2      21      6  28% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SN....R.NKAV.......      21      0     14      2      5      0      0      0      21      8  38% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........DT..SNK...R.NKAV....I..      21      0      8     10      3      0      0      0      21     14  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
.I-S......ER.L...VG......S.HTT.SNK..S.KNKA.S......      21      0     19      0      2      0      0      0      21     10  47% [T19I,L24-,P25-,P26-,A27S,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D-.........G........DT...NKT..RKNKAV.......      21      0     21      0      0      0      0      0      21     13  61% [L5F,L8F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,E554V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..ER.L...VG......S.HTT.SNK..S.KNKA.S......      20      0      0      1     19      0      0      0      20     11  55% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT...NK..S.KNKAPS......      20      0     10      0     10      0      0      0      20      8  40% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..EQ.L...VG......S.HT..SNK..S.KNKAPS......      20      3      5      1      4      0      0      7      20      9  45% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152Q,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......SKHT..SNKT.SRKNKAS.......      20     18      0      0      0      0      0      2      20     16  80% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,T323K,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.......I.G........DT..SNKT..RKNKAV.......      20     16      3      0      1      0      0      0      20     17  85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,N185I,F186-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KN.APS......      20      2      2     15      1      0      0      0      20     10  50% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........NT..SNKT..RKNKAV.......      20      2      0     18      0      0      0      0      20     16  80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339N,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKASP......      20      0      0     20      0      0      0      0      20     16  80% [L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.......P..G........DT..SNK...R.NKAV.......      20      0      0      0     20      0      0      0      20     19  95% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Q183P,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKT..RKNKAA.......      19      6      7      3      1      2      0      0      19      6  31% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G.N......DT..SNKT..RKNKAV.......      19     18      0      1      0      0      0      0      19     18  94% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,T208M,V213G,H245N,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L..DVG......SIHT..SNKT.SRKNKAS.......      19     18      1      0      0      0      0      0      19     14  73% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,T323I,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D.NER.L...VG......S.HTT.SNK..S.KNKA.S......      19      0      3      0     16      0      0      0      19     11  57% [T19I,L24-,P25-,P26-,A27S,G142D,H146N,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q........E....V...HT.ISNK.PS.KNKAPS......      19      1      8      7      1      1      1      0      19      9  47% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D...L......G........D...SNK...R.NKAV.......      19      0      0      1     18      0      0      0      19      5  26% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,W152L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SNKT..R.NKAV.......      19      0     16      2      1      0      0      0      19     13  68% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E...............................      19      0      2     17      0      0      0      0      19      8  42% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E......S.HT.ISNK.PS.KNKAPS......      18      6      4      8      0      0      0      0      18      7  38% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G257S,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D--........G........D...SNKT..RKNKAV.......      18      0      1     16      0      0      0      1      18     12  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.--.........G........DT..SNKT..RKNKAV.......      18      1      9      5      2      0      0      1      18      3  16% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..A---.....E..E....V...HT.ISNK.PS.KNKAPS......      18      1      6     11      0      0      0      0      18      6  33% [T19I,L24-,P25-,P26-,A27S,V83A,D138Q,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D..E.......G........DT..SNKT..RKNKAV.......      18      2      1     15      0      0      0      0      18     13  72% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.IS.K.PS.KNKAPS.H....      18      0     18      0      0      0      0      0      18     17  94% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....G..HT.ISNK.PS.KNKASS.H....      18      0      2     11      5      0      0      0      18     11  61% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G....D...DT..SNKT..RKNKAV.......      18      2      2      8      5      0      0      1      18     12  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G252D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.K.NAPS......      18      0      3     15      0      0      0      0      18     13  72% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,G476-,T478N,+478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.-........G........D....NKT..RKNKAV.......      18      0     18      0      0      0      0      0      18      8  44% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SF-.D-.........G........DT..SNKT..RKNKAV.......      18      4     12      2      0      0      0      0      18     11  61% [T19I,L24-,P25-,P26-,A27S,H69F,V70-,S71-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.I...................      18      0      0     18      0      0      0      0      18     10  55% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D........D.G........DT..SNK...R.NKAV.......      18      0      1      0     17      0      0      0      18     12  66% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,N185D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-...V.....G........DT..SNKT..RKNKAV.......      18      2      9      7      0      0      0      0      18     16  88% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,M153V,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKTA.RKNKAV.......      17      1      2     14      0      0      0      0      17      9  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,V445A,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G........DT..SNKT..RKNKAV...S...      17      4      8      3      0      1      0      1      17     11  64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      17      0      6      9      1      1      0      0      17     10  58% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNK.AS.KNKA........      17      0      0      0     17      0      0      0      17     11  64% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,G446S,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D574V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...H..ISNK.PS.KNKAPS......      17      1      9      0      0      0      6      1      17     12  70% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-...I.....G........DT..SNKT..RKNKAV....I..      17     12      0      4      0      0      0      1      17     14  82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,M153I,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAAS......      17      0     12      4      1      0      0      0      17     11  64% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G......D.DT..SNKT..RKNKAV.......      17      1      5      7      4      0      0      0      17      9  52% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.....Y..DT..SNKT..RKNKAV.......      17      0      0     17      0      0      0      0      17     14  82% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,D253Y,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S......ER.L...VG......S.HT..SNKT.SRKNKAS.......      17      0     17      0      0      0      0      0      17     11  64% [T19I,L24-,P25-,P26-,A27S,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.IS.K.PS.K...........      17      0      0     17      0      0      0      0      17     11  64% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S......ER.LN..VG......S.HT..SNKT.SRKNKAS.......      17      0     17      0      0      0      0      0      17     10  58% [T19I,L24-,P25-,P26-,A27S,K147E,W152R,F157L,K182N,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-K.....E..E....V...HT.I.NK.PS.KNKAPS......      16      0      6      3      5      1      1      0      16     11  68% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146K,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HTTISNK.PS.KNKAPS......      16      2      3     11      0      0      0      0      16     11  68% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,K356T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L....G........DT..SNKT..RKNKAV.......      16      4      1      8      3      0      0      0      16     14  87% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....I...HT.ISNK.PS.KNKAPS......      16      0      1     15      0      0      0      0      16     12  75% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252I,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNKT..R.NKAV.......      16      0      3      3     10      0      0      0      16     13  81% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L.R.VG......S.HTT.SNK..S.KNKA.S......      16      0      0      0     16      0      0      0      16     11  68% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,Q183R,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.IS.K.PS.KNKASS......      16      0      3     12      0      0      1      0      16      6  37% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK...R.NKAV......S      16      0      1      0     15      0      0      0      16     10  62% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
.I-S--.D-Q.....E..E....V...HT.ISNK.PS.KNKAPS......      16      0     14      1      1      0      0      0      16     12  75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....L....G........D...S.KT..RKNKAV.......      16      0     16      0      0      0      0      0      16     15  93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-...V...D.G........DT..SNKT..RKNKAV.......      16      0     16      0      0      0      0      0      16     11  68% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,M153V,N185D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,G946R,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D....T.....G.N....D.D...SNKRA.MKN.R........      16      0      3      5      6      0      0      2      16      8  50% [T19I,L24-,P25-,P26-,A27S,G142D,M153T,N164K,V213G,H245N,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,V445A,N450D,L452M,N460K,S477N,E484R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...........NKAV.......      16      0      1     15      0      0      0      0      16      3  18% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S......ER.L...VG......S.HT..SNK..S.KNKAPS......      16      0     16      0      0      0      0      0      16     15  93% [T19I,L24-,P25-,P26-,A27S,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.I.NK.PS.K.KAPS.H....      16      0     16      0      0      0      0      0      16     10  62% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V..........................      16      0      0     16      0      0      0      0      16      6  37% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,D614G,H655Y,N679K,P681H,D796Y,Q954H,N969K] 
.I-S...D..ER.L..SVG......S.HTT.SNK..S.KNKA.S......      15      0      1      8      6      0      0      0      15     13  86% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185S,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VGG.....S.HTT.SNK..S.KNKA.S......      15      4      0      0     10      0      0      1      15      7  46% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,D215G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG.Y....S.HTT.SNK..S.KNKA.S......      15      0     11      0      2      0      0      2      15     10  66% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,H245Y,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D..........G......D.DT..SNK...R.NKAV.......      15      0      0      0     15      0      0      0      15      7  46% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G257D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S--.D..........G........D...SNK...R.NKAV.....S.      15      0      0      0     15      0      0      0      15      8  53% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,T76I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.I-S--.D..........G........D...SNKM..RKNKAV.......      15      1      8      6      0      0      0      0      15      6  40% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444M,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D...SNKN..RKNKAV......L      15      2     13      0      0      0      0      0      15      7  46% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K150E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SNK...RYNKAV.......      15      0     12      1      2      0      0      0      15     14  93% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460Y,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L..DVG......S.HT..SNKT.SRKNKAS...S...      15     12      3      0      0      0      0      0      15     15 100% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS......S      15     10      2      0      2      0      0      1      15      8  53% [T19I,L24-,P25-,P26-,A27S,W64R,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] 
.I-S..AD-Q.....E..E....V...HT.ISNKRPS.KNKAPS......      15      0     11      4      0      0      0      0      15      9  60% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,K1255R] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS....D.      15      0      1     14      0      0      0      0      15     13  86% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020D] 
.I-S...D..ER.L.H.VG......S.HTT.SNK..S.KNKA.S......      14      0      2      0     12      0      0      0      14     11  78% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,Q183H,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G...T....D...SNK...R.NKAV.......      14      0      0      0     14      0      0      0      14     12  85% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,P251T,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D....T.....G.NH...D.D...SNKR..MKNKR........      14      0      0      0     14      0      0      0      14      8  57% [T19I,L24-,P25-,P26-,A27S,G142D,M153T,N164K,V213G,H245N,Y248H,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,N450D,L452M,N460K,S477N,T478K,E484R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S...D..ER.L...VG......S.HT..SNKT.SRKNKAS....I..      14      1     10      3      0      0      0      0      14      9  64% [L5F,T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] 
.I-S--.D-.........G......S.D...SNKN..RKNKAV.......      14      1     13      0      0      0      0      0      14      9  64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G257S,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.Y......D...SNKT..RKNKAV.......      14      0      0     10      4      0      0      0      14      9  64% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,H245Y,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..E.......G........DT..SNK.A.R.NKAV.......      14      0     14      0      0      0      0      0      14     14 100% [V3G,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147E,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D......I...G........DT..SNKT..RKNKAV......L      14      0      0     14      0      0      0      0      14     13  92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182I,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162L] Omicron_BA.4andBA.5
.I-SF-.D..........G........D...SNK...R.NKAV.......      14      1      1      0     12      0      0      0      14     11  78% [T19I,L24-,P25-,P26-,A27S,H69F,V70-,S71-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..EY...V...HT.ISNK.PS.KNKAPS......      14      1      3     10      0      0      0      0      14     14 100% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D215Y,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D-......E..E....V...HT.ISNK.PS.KNKAPS......      14      0     13      1      0      0      0      0      14     13  92% [T19I,L24-,P25-,P26-,A27S,G142D,Y144-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........DT..SNKRA.R.NKAA.......      14      0      0     14      0      0      0      0      14     13  92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,P209L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,V445A,L452R,S477N,T478K,E484A,F486A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK.A.R.NKAV.....S.      14      0      0      0     14      0      0      0      14     11  78% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V..IHT.I.NK.PS.K.KAPS......      14      0     14      0      0      0      0      0      14     12  85% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,T323I,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-..................D....NKT..RKNKAV.......      14      0      2      0     12      0      0      0      14      2  14% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,G339D,S371F,S373P,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,I666V,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNKN..RKNKAV....I..      13      1     12      0      0      0      0      0      13      5  38% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K150E,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,T883I,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HT..NNKT.SRKNKAS.......      13      1      4      8      0      0      0      0      13     11  84% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408N,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT.SNK..S.KNKA.S.....S      13      1      3      1      8      0      0      0      13     10  76% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] 
.I-S--.D..N.......G........D...SNK...R.NKAV.......      13      0      5      1      7      0      0      0      13      5  38% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147N,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G...L....D...SNKT..RKNKAV.......      13      0      5      7      0      0      0      1      13      8  61% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,P251L,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,E619Q,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..G........HT.ISNK.PS.KNKAPS......      13      0      3     10      0      0      0      0      13      6  46% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..QR.L...VG......S.HTT.SNK..S.KNKA.S......      13      0     10      3      0      0      0      0      13      9  69% [T19I,L24-,P25-,P26-,A27S,G142D,K147Q,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.HTT.SNK..S.KNKAS.......      13      6      6      1      0      0      0      0      13      5  38% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,T572I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,S1147L] 
.I-S--LD-.........G........DS..SNKT..RKNKAV.......      13     13      0      0      0      0      0      0      13     12  92% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,V83L,G142D,Y144-,V213G,G339D,R346S,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..E..L...VG......S.HT..SNKT.SRKNKAS.......      13      0      9      1      3      0      0      0      13      6  46% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,F157L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D-.........G........DT..SNK...R.NKAV.......      13      0      5      1      7      0      0      0      13      7  53% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,F220V,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT..SNKM..RKNKAV.......      13      0      2      9      1      1      0      0      13     11  84% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444M,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........DT...NK...R..KAV.......      13      0     13      0      0      0      0      0      13      7  53% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,L452R,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,N969K] 
.I-S......ER.L..DVG......S.HT..SNKT.SRKNKAS.......      13      0     13      0      0      0      0      0      13     10  76% [T19I,L24-,P25-,P26-,A27S,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SF-.D..........G........DT..SNK...R.NKAV.......      13      0      2      3      8      0      0      0      13      8  61% [T19I,L24-,P25-,P26-,A27S,H69F,V70-,S71-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D-.........G......S.DT..SNKT..RKNKAV.......      13      0      4      3      6      0      0      0      13      9  69% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G257S,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G..D.....DT..S.KT..RKNKAV.......      13      0     13      0      0      0      0      0      13      9  69% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D....T.....G.N....D.D...SNKT..MKNKR........      13      0      0      0     13      0      0      0      13     10  76% [T19I,L24-,P25-,P26-,A27S,G142D,M153T,N164K,V213G,H245N,G257D,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,N450D,L452M,N460K,S477N,T478K,E484R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I.---.D..........G........D...SNK...R.NKAV.......      13      0      1      0     12      0      0      0      13      8  61% [T19I,P25-,P26-,A27-,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,N450D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNEAPS......      13      1      2     10      0      0      0      0      13      7  53% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478E,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKALS......      12      0      1      9      2      0      0      0      12      8  66% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486L,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L..DVG......S.HT..SNKT.SRKNKAS...A...      12     12      0      0      0      0      0      0      12      9  75% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,N185D,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,P621A,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.I.NK.PS.KNKAPS.H....      12      0      5      0      7      0      0      0      12     11  91% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.I.NK.PS.KNKASS......      12      0      0      3      5      0      4      0      12      6  50% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.L-S...D..ER.L...VG......S.HTT.SNK..S.KNKA.S......      12      0      0      0     11      0      0      1      12     10  83% [T19L,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....G..HT.ISNK.PS.KNKASST.....      12      4      4      0      4      0      0      0      12      5  41% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,P521T,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG........HTT.SNK.AS.KNKA.S......      12      0      0      0     12      0      0      0      12      6  50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445A,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.Y........G........D...SNK...R.NKAV.......      12      0      0      0     12      0      0      0      12     10  83% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146Y,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S.FAD-Q.....E..E....V...HT.ISNK.PS.KNKAPS.H....      12      0     12      0      0      0      0      0      12     12 100% [T19I,L24-,P25-,P26-,A27S,V70F,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,I312V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..D.....DT..SNKT.VRKNKAV.......      12      1     11      0      0      0      0      0      12     11  91% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248D,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446V,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD.-.....E..E....V...HT.ISNK.PS.KNKASS......      12      0      1      2      9      0      0      0      12      8  66% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y145X,H146-,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG........D...SNKT..RKNKAV.......      12      0      2      9      1      0      0      0      12      6  50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,A688V,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D........Y.G........DT..SNKT..RKNKAV.......      12      0      0     12      0      0      0      0      12      9  75% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,N185Y,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D...S.KT..RKNKAV.......      12      0      7      5      0      0      0      0      12      6  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q..V..E..E....V...HT.ISNK.PS.KNKAPS......      12      2      2      7      1      0      0      0      12     10  83% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,M153V,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..S.....DT...NKT..RKNKAV.......      12      0     11      0      1      0      0      0      12      4  33% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248S,+248KW,+249DL,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,I1232V] 
.I-S--.D-.........G........DT..SNK...RKNKA........      12      0     12      0      0      0      0      0      12     11  91% [T19I,L24-,P25-,P26-,A27S,T29I,H69-,V70-,G142D,Y144-,V213G,L216F,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,N460K,S477N,T478K,N481S,G482-,E484A,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--..-.........G........DT...NKT..RKNKAV.......      12      0     12      0      0      0      0      0      12      6  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,Y144-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E.....G..HT.I.NK.PS.K.KASS.H....      12      0     12      0      0      0      0      0      12     10  83% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,D253G,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,Q613H,D614G,H655Y,N679K,P681H,N764K,D796Y,N969K] 
.I-S..AD-Q....EE..E....V...HT.ISNK.PS.KNKAPS......      11      5      0      6      0      0      0      0      11      4  36% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,K182E,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,I997V] 
.I-S...D..ER.L...VG......SIHT..SNKT.SRKNKAS.......      11      4      4      0      1      0      0      2      11      5  45% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,T323I,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.IS.K.PS.KNKAPSS.....      11      0     11      0      0      0      0      0      11      9  81% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,I410V,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,P521S,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q..I..E..E....V...HT.ISNK.PS.KNKAPS......      11      0      3      8      0      0      0      0      11      9  81% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,M153I,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.....E...G..HL....DT..SNKT.RRKNKAV.......      11     11      0      0      0      0      0      0      11     11 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,K182E,V213G,Y248H,P251L,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446R,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E........HT.ISNKRPS.KNKASS......      11      0      0     10      0      0      1      0      11      6  54% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,L858I,Q954H,N969K] 
.I-S...D..........G..NS....DT..SNK...R.NKAV.....S.      11      0      0     11      0      0      0      0      11     10  90% [T19I,L24-,P25-,P26-,A27S,G142D,V213G,Y248N,P251S,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,L455F,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,T547I,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S,Q1180K] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKASST.....      11      0      0      0     11      0      0      0      11      7  63% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,P521T,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....L....G........DT..S.KT..RKNKAV.......      11      0     11      0      0      0      0      0      11      6  54% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG...L..S.HT..SNKT.SRKNKAS.......      11     11      0      0      0      0      0      0      11     10  90% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,P251L,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAP.......      11      1      1      9      0      0      0      0      11      6  54% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G........D...SNK..DR.NKAV.....S.      11      0      0      0     11      0      0      0      11      7  63% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446D,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,S698L,N764K,D796Y,Q954H,N969K,A1020S,V1264L] Omicron_BA.4andBA.5
.I-S--.D-.........G........D...SNK...R.NKAV.....S.      11      0      0      0     11      0      0      0      11      6  54% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.I-S..AD-Q.....ES.E....V...HT.ISNK.PS.KNKAPS......      11      9      1      0      0      1      0      0      11      9  81% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,N185S,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
FI-S--.D..........G........DT..SNK...R.NKAV.....S.      11      0      0      0     11      0      0      0      11      7  63% [L5F,T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,S254F,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,A1020S] Omicron_BA.4andBA.5
.I-S--.D-..................DT...NKT..RKNKAV.......      11      0      6      0      5      0      0      0      11      2  18% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,G339D,R346T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E.......V...HT.I.NK.PS.K.KAPS......      11      0     11      0      0      0      0      0      11      7  63% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.L-S--.D..........G........D...SNK...R.NKAV.......      11      0      0      0     11      0      0      0      11      8  72% [T19L,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G.......ID...SNK...R.NKAV......S      11      0      0      0     11      0      0      0      11     10  90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T323I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,T676I,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162S] Omicron_BA.4andBA.5
.I-S..AD-Q.....E..-....V...HT.ISNK.PS.KNKAPS......      11      0      0     11      0      0      0      0      11     11 100% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,N211I,L212E,V213-,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG...H..S.HTT.SNK..S.KNKA.S......      10      0      8      1      1      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,P251H,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..........G..N.....DT..SNK...R.NKAV.......      10      0      1      9      0      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248N,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G........D...SNKR..R.NKAV.......      10      0      1      0      9      0      0      0      10      3  30% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444R,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HTR.SNKT.SRKNKAS.......      10     10      0      0      0      0      0      0      10      9  90% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356R,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..IR......G........DT..SNKT..RKNKAV.......      10      0      7      0      1      0      0      2      10      8  80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,W152R,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D......N...G........DT..SNKT..RKNKAV.......      10      1      8      1      0      0      0      0      10      7  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K182N,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G..H.....DT..SNK...R.NKAV.......      10      2      0      0      7      0      0      1      10      5  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248H,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.......ID...SNKT..RKNKAV.......      10      0      0     10      0      0      0      0      10      5  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,T323I,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........E........D...SNKT..RKNKAV...S...      10      0      0     10      0      0      0      0      10      9  90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213E,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,P621S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.H.T.SNK..S.KNKA........      10      5      2      0      3      0      0      0      10      5  50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N450D,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D614G,P631S,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,D1153Y] 
.I-S--.D..........G........DT..SNKT...KNKAV.......      10      0     10      0      0      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,Y38X,P39X,D40X,K41X,V42X,F43X,R44X,S45X,S46X,V47X,L48X,H49X,S50X,T51X,Q52X,D53X,L54X,F55X,L56X,P57X,F58X,F59X,S60X,N61X,V62X,T63X,W64X,F65X,H69-,V70-,G142D,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D.......H..G........DT..SNKT..RKNKAV.......      10      0      3      2      5      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Q183H,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G..S.....DT..SNKTA.RKNKAV.......      10      0     10      0      0      0      0      0      10      7  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248S,+248KW,+249DL,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,V445A,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G....S...D...SNKN..RKNKAV.......      10      1      6      3      0      0      0      0      10      5  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,G252S,S255F,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444N,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D--........G........DT..SNKT..RK.NAV.......      10     10      0      0      0      0      0      0      10     10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,H146-,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,G476-,T478N,+478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1143L] 
.I-S--.D..IL......G........DT..SNKT..RKNKAV.......      10      1      8      1      0      0      0      0      10     10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,W152L,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.Y......DT..SNK...R.NKAV.......      10      0      4      0      6      0      0      0      10      4  40% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,H245Y,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D.Y........G........DT..SNKT..RKNKAV.......      10      0      4      6      0      0      0      0      10      9  90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,H146Y,V213G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........G.-......DT..SNKT..RKNKAV.......      10      0      0     10      0      0      0      0      10      9  90% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,L244F,H245-,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L...VG......S.HTT.SNK..S.K.NA.S......      10      0      3      0      7      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,G476-,T478N,+478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D..I..L....G........D...SNKT..RKNKAV.......      10      0     10      0      0      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,K147I,F157L,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
FI-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKASS......      10      0      0     10      0      0      0      0      10      3  30% [L5F,T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,R403K,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,A852V,Q954H,N969K] 
.I-S--.D-.........E........D...SNKT..RKNKAV.......      10      0     10      0      0      0      0      0      10      8  80% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213E,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS.....Q      10      0      0      9      1      0      0      0      10      9  90% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K,P1162Q] 
.I-S--.D..........G..H.....D...SNKT..RKNKAV.......      10      0      5      5      0      0      0      0      10      5  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,V213G,Y248H,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S......ER.L...VG........HTT.SN...S.KNKA.S......      10      0     10      0      0      0      0      0      10      2  20% [T19I,L24-,P25-,P26-,A27S,K147E,W152R,F157L,I210V,V213G,A260X,G261X,A262X,A263X,A264X,Y265X,Y266X,V267X,G268X,Y269X,L270X,Q271X,P272X,R273X,T274X,F275X,L276X,L277X,K278X,Y279X,N280X,E281X,N282X,G283X,T284X,I285X,T286X,D287X,A288X,V289X,D290X,C291X,A292X,L293X,D294X,P295X,L296X,S297X,E298X,T299X,K300X,C301X,T302X,L303X,K304X,S305X,F306X,T307X,V308X,E309X,K310X,G311X,I312X,Y313X,Q314X,T315X,S316X,N317X,F318X,R319X,V320X,Q321X,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,G446S,N460K,T470N,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-......R..G.....G..DT..SNKT..RKNKAV.......      10      1      8      0      1      0      0      0      10      5  50% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,Q183R,V213G,D253G,G339D,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S--.D..........-........D...SNKT..R.NKAV.......      10      0      0      0     10      0      0      0      10     10 100% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,N211I,L212G,V213-,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-.........G........D...SNKT..R.NKAV.......      10      0     10      0      0      0      0      0      10      7  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D-Q.....E..E....V...HT.I.NK.PS.KNKAPS......      10      0      4      2      0      4      0      0      10      1  10% [T19I,L24-,P25-,P26-,A27S,D88X,G89X,V90D,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..A.-Q.....E..E....V...HT.ISNK.PS.KNKASS......      10      0      3      4      0      0      3      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486S,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S..AD-Q.....E..E....V...HT.ISNK.PS.KNKAPS..L...      10      2      3      5      0      0      0      0      10      7  70% [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,P621L,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S--.D-....L....G........DI..SNKT..RKNKAV.......      10      0     10      0      0      0      0      0      10      7  70% [T19I,L24-,P25-,P26-,A27S,H69-,V70-,G142D,Y144-,F157L,V213G,G339D,R346I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,L452R,N460K,S477N,T478K,E484A,F486V,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Omicron_BA.4andBA.5
.I-S...D..ER.L.L.VG......S.HT..SNKT.SRKNKAS.......      10      9      0      0      1      0      0      0      10      9  90% [V6F,T19I,L24-,P25-,P26-,A27S,N137S,G142D,K147E,W152R,F157L,Q183L,I210V,V213G,G257S,G339H,R346T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,F486S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.H.T..NK..S.KNKA.S......      10      0      7      0      3      0      0      0      10      6  60% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,I210V,V213G,G257S,G339H,K356T,S371F,S373P,S375F,T376A,D405N,K417N,N440K,G446S,N450D,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-S...D..ER.L...VG......S.H....NKT.SRKNKA........      10      0      0      0     10      0      0      0      10      5  50% [T19I,L24-,P25-,P26-,A27S,G142D,K147E,W152R,F157L,Y170X,V171X,S172X,Q173X,P174X,F175X,I210V,V213G,G257S,G339H,S371F,S373P,T376X,D405N,K417N,N440K,K444T,G446S,L452R,N460K,S477N,T478K,E484A,Q498R,N501Y,Y505H,D574V,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 
.I-SY..D..ER.L...VG......S.HTT.SNK..S.KNKA.S......      10      0      0      0     10      0      0      0      10      7  70% [T19I,L24-,P25-,P26-,A27S,H69Y,G142D,Y145H,K147E,W152R,F157L,I210V,V213G,G257S,G339H,R346T,K356T,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,G446S,N460K,S477N,T478K,E484A,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] 

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