Site Map

CATNAP Compile, Analyze and Tally Neutralizing Antibody Panels: a database and analysis tool for antibody neutralization data.

Neutralizing Antibody Contacts & Features Spike coordinates of contacts and other features associated with neutralizing antibodies.

Embers Follow emergent SARS-CoV-2 variants over time; graphs showing overall global trends in variant frequency over the past year.

Frequency Changes in Common Forms Follow frequency changes in SARS-CoV-2 variants over time.

Most common spike forms based on Pango lineage designations A list of Pango-defined Spike lineages, showing the number of such sequences and the associated mutations.

Geographic distribution of hCoV-19 variants View pie charts of variant distribution per country, displayed on a global map.

Codes and Symbols in Sequences Decode the symbols in sequences.

AnalyzeAlign Show weblogos, calculate frequency by position, and find variants in an alignment.

Geographically Restricted Embers Follow emergent SARS-CoV-2 variants over time.

Geographically Restricted Frequency Changes in Common Forms

Geographically Restricted Pango Common Forms Geographically Restricted Most Common Forms based on Pango Lineage Designations

Isotonic Regression Model the daily fraction of a SARS-CoV-2 variant as a function of time in local regions.

SARS-CoV-2 Sequence Locator Find the position of your nucleotide or protein sequence(s) relative to the appropriate viral reference strain; or obtain a sequence based on a coordinate location.

Variant Visualizer Make a highlighter plot showing mutated positions in an alignment.

External Tools Links to other CoV tools, software, and information.