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COVID-19 Viral Genome Analysis Pipeline
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AnalyzeAlign

Purpose: Show weblogos, calculate frequency by position, and find variants in an alignment. Explanation.

Input
Genomic region
Positions/range to analyze
[Sample Input:
ACE2 receptors
]
Total positions ≤ 30, numbers must refer to residues of NC_045512
Positions are coordinates of   sequence
LANL Alignment icon      
  -
Group the sequences

     
plus Logo options
minus Other options
Output
Downloadable logo files PDF  EPS  SVG 
Combine logos for subsets into a page
Concatenate PDF or EPS logos as a x matrix   (row x column)
      Orientation:
     


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last modified: Thu Sep 24 18:39 2020



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