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COVID-19 Viral Genome Analysis Pipeline
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AnalyzeAlign

Purpose: Show weblogos, calculate frequency by position, and find variants in an alignment. Explanation.

Input
Alignment
Positions/range to analyze
[Sample Input:
ACE2 receptors
]
Total positions ≤ 30, numbers must refer to residues of NC_045512
Positions are coordinates of   sequence
Sequence filter
Collection date -
Host
Pango lineage designation
in GISAID
Geographic region



plus Logo options
minus Other options
Output
Downloadable logo files PDF  EPS  SVG 
Combine logos for separate results into a page
Concatenate PDF or EPS logos as a x matrix   (row x column)
      Orientation:
     
Email results


Related links:

last modified: Thu Apr 4 15:56 2024

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