COVID-19 Viral Genome Analysis Pipeline
Enabled by data from
Most common spike forms based on Pango lineage designations
Last update: Jan 20, 2022
Sequences: Short list of Last 60 days
As new lineages emerge, there are often many sequences with many ambiguous base calls. Our pipeline filters out such sequences, and as a consequence we undercount the number of sequences in GISAID that have been specified as members of related Pango lineages. Our strategy, however, enables us to use strictly high quality sequences to identify and track the common Spike forms in emerging lineages.
COMMON FORMS OF SPIKE WITH A GIVEN PANGO LINEAGE DESIGNATION
For each lineage, we show the most common forms of Spike, as well as their counts within (and percentages of) the lineage. [Note that if a lineage contains several divergent forms of Spike, the consensus form might not be found among these common forms.] Also shown is the Hamming distance (HD) between each form and the most common form in that lineage. Deletions relative to the ancestral reference strain are indicated with a dash (e.g. the two amino acid deletion in Delta variant are indicated as: 'E156-,F157-'), and insertions are denoted by a plus sign (e.g. B.1.621 usually has an extra T at position 143, it is written '+143T').
We show the 5 most common forms. This output is based on sequences sampled in the last 60 days from our last update, from 2021-11-21 to 2022-01-14.
Pango Lineage Form Form Lineage Count Count Pct HD [Spike form as mutation string] AY.4 111557 55937 50.1% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4 111557 2659 2.4% 1 [T19R,T95I,D138H,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4 111557 2658 2.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1141F] AY.4 111557 1521 1.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1078S] AY.4 111557 1459 1.3% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] BA.1 57789 24233 41.9% 0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] (consensus) BA.1 57789 16126 27.9% 1 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] BA.1 57789 2524 4.4% 5 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211I,L212-,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] BA.1 57789 2120 3.7% 1 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,A701V,N764K,D796Y,N856K,Q954H,N969K,L981F] BA.1 57789 911 1.6% 5 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] AY.43 47446 24621 51.9% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.43 47446 3376 7.1% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43 47446 591 1.2% 1 [V6F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43 47446 444 0.9% 1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43 47446 347 0.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S813I,D950N] AY.103 43231 24824 57.4% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.103 43231 1158 2.7% 1 [T19R,D80Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.103 43231 839 1.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.103 43231 743 1.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.103 43231 394 0.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.2 32328 20692 64.0% 0 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.2 32328 846 2.6% 1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.4.2 32328 602 1.9% 1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,H1083Y] AY.4.2 32328 513 1.6% 1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,Q414K,L452R,T478K,D614G,P681R,D950N] AY.4.2 32328 324 1.0% 1 [L5F,T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.122 26213 8882 33.9% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.122 26213 2719 10.4% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.122 26213 761 2.9% 2 [T19R,G142D,E156G,F157-,R158-,W258R,L452R,T478K,D614G,P681R,D950N,A1078S] AY.122 26213 717 2.7% 1 [T19R,G142D,E156G,F157-,R158-,T240I,L452R,T478K,D614G,P681R,D950N] AY.122 26213 521 2.0% 1 [T19R,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] AY.44 24349 14259 58.6% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.44 24349 713 2.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.44 24349 221 0.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.44 24349 196 0.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T604I,D614G,P681R,D950N] AY.44 24349 193 0.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] AY.3 16063 7380 45.9% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.3 16063 829 5.2% 1 [T19R,V70I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.3 16063 325 2.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T1117I] AY.3 16063 299 1.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.3 16063 281 1.7% 1 [T19R,G142D,E156G,F157-,R158-,N354T,L452R,T478K,D614G,P681R,D950N] AY.25.1 15526 9664 62.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.25.1 15526 217 1.4% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.25.1 15526 199 1.3% 1 [T19R,V70F,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.25.1 15526 192 1.2% 1 [Q14H,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.25.1 15526 162 1.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.4.2.2 13757 7609 55.3% 0 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus) AY.4.2.2 13757 1044 7.6% 1 [S13T,T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.4.2.2 13757 797 5.8% 1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,T299I,L452R,T478K,D614G,P681R,D950N,V1264L] AY.4.2.2 13757 676 4.9% 1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1133I,V1264L] AY.4.2.2 13757 582 4.2% 1 [L18F,T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.25 13564 4997 36.8% 0 [T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.25 13564 2960 21.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.25 13564 535 3.9% 2 [T19R,G142D,E156G,F157-,R158-,S221L,L452R,T478K,D614G,P681R,D950N] AY.25 13564 235 1.7% 3 [T19R,G142D,E156G,F157-,R158-,L176F,S221L,L452R,T478K,D614G,P681R,D950N] AY.25 13564 179 1.3% 1 [T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,E654V,P681R,D950N] AY.100 12295 6257 50.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.100 12295 397 3.2% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.100 12295 353 2.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,T385I,L452R,T478K,D614G,P681R,D950N] AY.100 12295 198 1.6% 1 [T19R,P82T,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.100 12295 181 1.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] B.1.617.2 10220 3429 33.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) B.1.617.2 10220 965 9.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] B.1.617.2 10220 633 6.2% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1167V] B.1.617.2 10220 183 1.8% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,Q787K,D950N,G1219C] B.1.617.2 10220 120 1.2% 2 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.98 9463 4556 48.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.98 9463 570 6.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1176F] AY.98 9463 562 5.9% 1 [T19R,E96V,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.98 9463 367 3.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219V] AY.98 9463 317 3.3% 2 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N,D1127G] AY.126 8337 3002 36.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] (consensus) AY.126 8337 627 7.5% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] AY.126 8337 290 3.5% 3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S689I,D950N] AY.126 8337 265 3.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,N188S,L452R,T478K,D614G,P681R,I850L,D950N] AY.126 8337 221 2.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,I850L,D950N] AY.4.2.1 8183 6222 76.0% 0 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.2.1 8183 279 3.4% 1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A899S,D950N] AY.4.2.1 8183 135 1.6% 1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1187S] AY.4.2.1 8183 119 1.5% 1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,P809L,D950N] AY.4.2.1 8183 97 1.2% 1 [T19R,V36F,G75R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.121 6793 2665 39.2% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.121 6793 772 11.4% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.121 6793 255 3.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,E180Q,L452R,T478K,D614G,P681R,D950N] AY.121 6793 105 1.5% 2 [T19R,T95I,E156G,F157-,R158-,E180Q,L452R,T478K,D614G,P681R,D950N] AY.121 6793 68 1.0% 2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1078S] AY.127 6525 2738 42.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.127 6525 466 7.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D950N] AY.127 6525 319 4.9% 1 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.127 6525 300 4.6% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.127 6525 177 2.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] AY.39 6231 3073 49.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.39 6231 452 7.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] AY.39 6231 203 3.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] AY.39 6231 147 2.4% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.39 6231 144 2.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,L585F,D614G,P681R,D950N] AY.5 5211 3007 57.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5 5211 244 4.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.5 5211 204 3.9% 1 [T19R,G142D,E156G,F157-,R158-,T376I,L452R,T478K,D614G,P681R,D950N] AY.5 5211 197 3.8% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,V772I,D950N] AY.5 5211 113 2.2% 3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,I770V,V772I,D950N] AY.119 4664 1486 31.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.119 4664 1098 23.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] AY.119 4664 112 2.4% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,G946R,D950N] AY.119 4664 84 1.8% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484K,D614G,S673T,P681R,D950N] AY.119 4664 66 1.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1163G] AY.39.1 4236 1648 38.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.39.1 4236 1634 38.6% 1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.39.1 4236 52 1.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] AY.39.1 4236 50 1.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1262D] AY.39.1 4236 47 1.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,V227I,L452R,T478K,D614G,P681R,D950N] AY.46 4125 2660 64.5% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46 4125 159 3.9% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.46 4125 104 2.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,E583D,D614G,P681R,D950N] AY.46 4125 72 1.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A846S,D950N] AY.46 4125 64 1.6% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.98.1 4001 1853 46.3% 0 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N] (consensus) AY.98.1 4001 433 10.8% 1 [T19R,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N] AY.98.1 4001 173 4.3% 1 [T19R,D80Y,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N] AY.98.1 4001 129 3.2% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.98.1 4001 104 2.6% 1 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,A942S,D950N] AY.46.6 3925 1626 41.4% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46.6 3925 520 13.2% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.46.6 3925 109 2.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I834V,D950N] AY.46.6 3925 102 2.6% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1167V] AY.46.6 3925 86 2.2% 1 [T19R,H69Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] BA.2 3556 2828 79.5% 0 [T19I,L24S,P25-,P26-,A27-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) BA.2 3556 560 15.7% 4 [T19I,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2 3556 27 0.8% 1 [T19I,L24S,P25-,P26-,A27-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2 3556 16 0.4% 1 [T19I,L24S,P25-,P26-,A27-,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2 3556 8 0.2% 1 [T19I,L24S,P25-,P26-,A27-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,A831T,Q954H,N969K] AY.36 3458 2389 69.1% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus) AY.36 3458 220 6.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N,V1104L] AY.36 3458 193 5.6% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.36 3458 55 1.6% 1 [T19R,A67V,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.36 3458 31 0.9% 2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N,V1104L] AY.120 3309 1529 46.2% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.120 3309 498 15.0% 1 [T19R,T51I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.120 3309 79 2.4% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.120 3309 76 2.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.120 3309 70 2.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,V407I,L452R,T478K,D614G,P681R,D950N] AY.9.2 3227 1593 49.4% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.9.2 3227 211 6.5% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.9.2 3227 104 3.2% 1 [T19R,A67V,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.9.2 3227 100 3.1% 1 [T19R,G142D,E156G,F157-,R158-,D215H,A222V,L452R,T478K,D614G,P681R,D950N] AY.9.2 3227 58 1.8% 2 [T19R,G142D,E156G,F157-,R158-,A222V,T250I,S255F,L452R,T478K,D614G,P681R,D950N] AY.4.6 2953 1789 60.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.6 2953 231 7.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N] AY.4.6 2953 121 4.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,M1237I] AY.4.6 2953 71 2.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,A222S,L452R,T478K,D614G,P681R,D950N] AY.4.6 2953 46 1.6% 1 [T19R,P26S,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.125 2811 1294 46.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.125 2811 328 11.7% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.125 2811 98 3.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N] AY.125 2811 74 2.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] AY.125 2811 62 2.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A879S,D950N] AY.4.5 2523 1589 63.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] (consensus) AY.4.5 2523 69 2.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796G,D950N,D1259Y] AY.4.5 2523 42 1.7% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] AY.4.5 2523 39 1.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796H,D950N,D1259Y] AY.4.5 2523 29 1.1% 1 [T19R,T33I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] AY.43.6 2405 2094 87.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.43.6 2405 35 1.5% 1 [T19R,D80Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.6 2405 33 1.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,R1091H] AY.43.6 2405 24 1.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1063F] AY.43.6 2405 23 1.0% 1 [T19R,G142D,E156G,F157-,R158-,T274I,L452R,T478K,D614G,P681R,D950N] AY.117 2278 1355 59.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.117 2278 62 2.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1078S] AY.117 2278 52 2.3% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.117 2278 48 2.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D574Y,D614G,P681R,D950N] AY.117 2278 43 1.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1223S] AY.20 2263 767 33.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus) AY.20 2263 298 13.2% 1 [T19R,T95I,K97E,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.20 2263 198 8.7% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.20 2263 54 2.4% 2 [T19R,T95I,K97E,D138H,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.20 2263 42 1.9% 2 [T19R,T95I,K97E,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.129 2237 1302 58.2% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.129 2237 377 16.9% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.129 2237 42 1.9% 2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] AY.129 2237 37 1.7% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N,D1163Y] AY.129 2237 32 1.4% 1 [P9S,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.33 2192 407 18.6% 0 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,L452R,T478K,D614G,P681R,D950N] (consensus) AY.33 2192 348 15.9% 1 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,L452R,T478K,Q613H,D614G,P681R,D950N] AY.33 2192 196 8.9% 2 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,L452R,T478K,Q613H,D614G,P681R,D950N,E1202Q] AY.33 2192 105 4.8% 2 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,P681R,D950N] AY.33 2192 94 4.3% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.111 2166 1152 53.2% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.111 2166 233 10.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] AY.111 2166 158 7.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.111 2166 86 4.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.111 2166 32 1.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,T259I,L452R,T478K,D614G,P681R,D950N] AY.112 2137 1296 60.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.112 2137 44 2.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.112 2137 40 1.9% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D936G,D950N,P1263Q] AY.112 2137 26 1.2% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] AY.112 2137 22 1.0% 1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.69 2075 1019 49.1% 0 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.69 2075 425 20.5% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.69 2075 141 6.8% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R] AY.69 2075 51 2.5% 1 [T19R,E156G,F157-,R158-,A222V,G446V,L452R,T478K,D614G,P681R,D950N] AY.69 2075 15 0.7% 2 [T19R,G142D,E156G,F157-,R158-,A222V,G446V,L452R,T478K,D614G,P681R,D950N] AY.4.2.3 1988 938 47.2% 0 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.2.3 1988 427 21.5% 1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,L1049I] AY.4.2.3 1988 116 5.8% 1 [T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.4.2.3 1988 21 1.1% 2 [T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,L1049I] AY.4.2.3 1988 21 1.1% 1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,E554Q,D614G,P681R,D950N] AY.6 1938 720 37.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.6 1938 127 6.6% 2 [T19R,T22I,A67V,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.6 1938 116 6.0% 2 [T19R,G142D,E156G,F157-,R158-,M177I,L452R,T478K,D614G,P681R,Y837H,D950N] AY.6 1938 85 4.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.6 1938 57 2.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1207D] AY.26 1935 621 32.1% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus) AY.26 1935 297 15.3% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] AY.26 1935 65 3.4% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.26 1935 62 3.2% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,A1020S,V1264L] AY.26 1935 35 1.8% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,P812L,D950N,V1264L] AY.42 1913 454 23.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.42 1913 170 8.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.42 1913 157 8.2% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.42 1913 83 4.3% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T719I,T732I,D950N] AY.42 1913 73 3.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T719I,D950N] AY.34 1803 1038 57.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] (consensus) AY.34 1803 127 7.0% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] AY.34 1803 62 3.4% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.34 1803 55 3.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,A1016V] AY.34 1803 27 1.5% 2 [T19R,T95I,G142D,V143I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,A1016V] AY.119.2 1790 729 40.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N] (consensus) AY.119.2 1790 503 28.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N,V1176F] AY.119.2 1790 73 4.1% 1 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N] AY.119.2 1790 37 2.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N] AY.119.2 1790 32 1.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,Q675H,P681R,D950N] AY.118 1711 969 56.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.118 1711 186 10.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] AY.118 1711 36 2.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.118 1711 20 1.2% 1 [T19R,A27V,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.118 1711 17 1.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N] AY.47 1708 993 58.1% 0 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N] (consensus) AY.47 1708 59 3.5% 3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,N501Y,D614G,P681R,D950N] AY.47 1708 45 2.6% 1 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,I584V,D614G,P681R,D950N] AY.47 1708 38 2.2% 2 [T19R,G142D,E156G,F157-,R158-,R214H,A222V,V289I,L452R,S477I,T478K,D614G,P681R,D950N] AY.47 1708 26 1.5% 1 [T19R,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N] AY.113 1674 1021 61.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.113 1674 81 4.8% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.113 1674 20 1.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,V433I,L452R,T478K,D614G,P681R,D950N] AY.113 1674 16 1.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796Y,D950N] AY.113 1674 12 0.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,C1236F] AY.34.1 1666 590 35.4% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] (consensus) AY.34.1 1666 448 26.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,V1133I,L1265F] AY.34.1 1666 91 5.5% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] AY.34.1 1666 51 3.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,P1263L,L1265F] AY.34.1 1666 49 2.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] AY.4.8 1505 1226 81.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.8 1505 52 3.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G181R,L452R,T478K,D614G,P681R,D950N] AY.4.8 1505 23 1.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T961M] AY.4.8 1505 20 1.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1020V] AY.4.8 1505 12 0.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1124V] B.1.1.529 1463 714 48.8% 0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] (consensus) B.1.1.529 1463 142 9.7% 9 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,L452R,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.1.529 1463 91 6.2% 1 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,G339D,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.1.529 1463 58 4.0% 2 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,G339D,R346K,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.1.529 1463 31 2.1% 2 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,L452R,T478K,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] AY.43.4 1388 180 13.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.4 1388 169 12.2% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.43.4 1388 145 10.4% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.4 1388 125 9.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.4 1388 111 8.0% 3 [T19R,E156G,F157-,R158-,K356R,L452R,T478K,D614G,P681R,D950N] AY.99.2 1290 498 38.6% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.99.2 1290 265 20.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.99.2 1290 72 5.6% 1 [T19R,E156G,F157-,R158-,D178H,L452R,T478K,D614G,P681R,D950N] AY.99.2 1290 52 4.0% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] AY.99.2 1290 20 1.6% 1 [L5F,T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.102 1249 488 39.1% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.102 1249 71 5.7% 2 [T19R,R21T,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.102 1249 41 3.3% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1202Q] AY.102 1249 29 2.3% 1 [T19R,H69Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.102 1249 19 1.5% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N] AY.121.1 1174 671 57.2% 0 [T19R,T29I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.121.1 1174 81 6.9% 1 [V6F,T19R,T29I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.121.1 1174 70 6.0% 1 [T19R,T29I,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.121.1 1174 62 5.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.121.1 1174 28 2.4% 2 [T19R,T29I,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,N1158D] AY.39.1.2 1056 691 65.4% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.39.1.2 1056 57 5.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.39.1.2 1056 51 4.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N] AY.39.1.2 1056 41 3.9% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.39.1.2 1056 24 2.3% 1 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.124 999 373 37.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.124 999 67 6.7% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.124 999 48 4.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A688V,D950N] AY.124 999 43 4.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1202Q] AY.124 999 40 4.0% 2 [T19R,H69Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,I1114V] AY.3.1 986 572 58.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.3.1 986 32 3.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,I1227V] AY.3.1 986 23 2.3% 1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.3.1 986 22 2.2% 3 [T19R,G142D,E156G,F157-,R158-,M177I,A222V,L452R,T478K,D614G,P681R,D950N,L1063F] AY.3.1 986 19 1.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.27 947 680 71.8% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] (consensus) AY.27 947 61 6.4% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.27 947 38 4.0% 1 [L8F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] AY.27 947 19 2.0% 1 [T19R,G75V,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] AY.27 947 16 1.7% 1 [T19R,G142D,Y144-,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] AY.23 938 483 51.5% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus) AY.23 938 65 6.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] AY.23 938 22 2.3% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A845S,D950N,V1264L] AY.23 938 20 2.1% 3 [T19R,H69-,V70-,G142D,E156G,F157-,R158-,D215N,L452R,T478K,D614G,P681R,D950N,V1264L] AY.23 938 11 1.2% 4 [T19R,S71P,T95I,G142D,Y145H,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D950N,V1264L] AY.85 849 197 23.2% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.85 849 194 22.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.85 849 26 3.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,V860I,D950N] AY.85 849 26 3.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,S477I,T478K,D614G,P681R,D950N] AY.85 849 20 2.4% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,T678I,P681R,D950N] AY.75 715 418 58.5% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.75 715 39 5.5% 2 [T19R,G142D,E156G,F157-,R158-,D215Y,A222V,R237S,L452R,T478K,D614G,P681R,D950N] AY.75 715 27 3.8% 2 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,V483F,D614G,P681R,D950N] AY.75 715 20 2.8% 1 [T19R,V90L,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.75 715 19 2.7% 1 [T19R,G142D,E156G,F157-,R158-,D215Y,A222V,L452R,T478K,D614G,P681R,D950N] AY.109 706 401 56.8% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.109 706 58 8.2% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S698L,D950N,H1058Y] AY.109 706 43 6.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1058Y] AY.109 706 33 4.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] AY.109 706 16 2.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484K,D614G,P681R,D950N] AY.92 696 284 40.8% 0 [T19R,T95I,G142D,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N] (consensus) AY.92 696 92 13.2% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.92 696 36 5.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.92 696 30 4.3% 1 [T19R,T95I,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N] AY.92 696 18 2.6% 3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1167V] AY.39.1.1 694 385 55.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.39.1.1 694 143 20.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G219D,L452R,T478K,D614G,P681R,D950N] AY.39.1.1 694 67 9.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,R765H,D950N] AY.39.1.1 694 21 3.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1230L] AY.39.1.1 694 7 1.0% 2 [T19R,T95I,G142D,E156G,F157-,R158-,G219D,L452R,T478K,D614G,P681R,D950N,R1014T] AY.4.9 663 393 59.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.9 663 56 8.4% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.9 663 30 4.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] AY.4.9 663 19 2.9% 3 [T19R,T95I,E156G,F157-,R158-,A352S,L452R,T478K,D614G,Q677H,P681R,D950N] AY.4.9 663 9 1.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] AY.4.10 628 537 85.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P812S,D950N] (consensus) AY.4.10 628 10 1.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P812S,T859I,D950N] AY.4.10 628 7 1.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P812S,D950N,T1117I] AY.4.10 628 7 1.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E583D,D614G,P681R,P812S,D950N] AY.4.10 628 6 1.0% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P812S,D950N] AY.74 581 409 70.4% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.74 581 57 9.8% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.74 581 11 1.9% 3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,H655Y,P681R,D950N] AY.74 581 10 1.7% 2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,S680F,P681R,D950N,H1101Y] AY.74 581 9 1.5% 1 [T19R,G142D,Y144-,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.7.1 547 287 52.5% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.7.1 547 103 18.8% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.7.1 547 24 4.4% 1 [T19R,G142D,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] AY.7.1 547 19 3.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] AY.7.1 547 10 1.8% 2 [V16F,T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.110 501 196 39.1% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.110 501 30 6.0% 1 [T19R,H69Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.110 501 23 4.6% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,Q787K,D950N,G1219C] AY.110 501 10 2.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.110 501 10 2.0% 1 [T19R,A27V,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.3.3 459 311 67.8% 0 [T19R,V70I,G142D,E156G,F157-,R158-,Q414R,L452R,T478K,D614G,P681R,D950N] (consensus) AY.3.3 459 29 6.3% 1 [T19R,V70I,E156G,F157-,R158-,Q414R,L452R,T478K,D614G,P681R,D950N] AY.3.3 459 20 4.4% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.3.3 459 19 4.1% 1 [T19R,V70I,G142D,E156G,F157-,R158-,Q414R,L452R,T478K,D614G,P681R,D950N,D1163Y] AY.3.3 459 12 2.6% 1 [L5F,T19R,V70I,G142D,E156G,F157-,R158-,Q414R,L452R,T478K,D614G,P681R,D950N] AY.107 433 177 40.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] (consensus) AY.107 433 39 9.0% 5 [T19R,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.107 433 36 8.3% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.107 433 34 7.9% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.107 433 17 3.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D936G,D950N,H1101Y] AY.46.4 425 326 76.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,E661D,P681R,D950N] (consensus) AY.46.4 425 10 2.4% 1 [T19R,G142D,E156G,F157-,R158-,A222S,L452R,T478K,D614G,E661D,P681R,D950N] AY.46.4 425 8 1.9% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,A520S,D614G,E661D,P681R,D950N,K1181R] AY.46.4 425 5 1.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,E661D,P681R,D950N,E1150D] AY.46.4 425 5 1.2% 1 [T19R,G142D,E156G,F157-,R158-,V213L,L452R,T478K,D614G,E661D,P681R,D950N] AY.90 399 352 88.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.90 399 15 3.8% 2 [T19R,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D614G,P681R,D950N,V1122L] AY.90 399 12 3.0% 1 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,T478K,D614G,P681R,D950N] AY.90 399 5 1.3% 1 [T19R,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D614G,P681R,D950N] AY.90 399 2 0.5% 3 [T19R,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D614G,P681R,D950N,V1122L,E1150D] AY.5.4 395 171 43.3% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5.4 395 43 10.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.5.4 395 27 6.8% 1 [T19R,D80Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.5.4 395 15 3.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,N501Y,D614G,P681R,D950N] AY.5.4 395 14 3.5% 3 [T19R,D80Y,G142D,E156G,F157-,R158-,S162I,H245Y,L452R,T478K,D614G,P681R,D950N] AY.122.3 387 356 92.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] (consensus) AY.122.3 387 7 1.8% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] AY.122.3 387 3 0.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,A684V,D950N] AY.122.3 387 3 0.8% 1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.122.3 387 2 0.5% 1 [T19R,N30H,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.39.2 378 174 46.0% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] (consensus) AY.39.2 378 124 32.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] AY.39.2 378 13 3.4% 1 [T19R,T95I,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1073N] AY.39.2 378 10 2.6% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,V635A,P681R,D950N,K1073N] AY.39.2 378 6 1.6% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N,R1185L] AY.132 368 317 86.1% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.132 368 24 6.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1079T] AY.132 368 4 1.1% 2 [T19K,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.132 368 2 0.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L176F,L452R,T478K,D614G,P681R,D950N] AY.132 368 2 0.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,M1233I] AY.46.1 367 228 62.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46.1 367 58 15.8% 1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.46.1 367 7 1.9% 2 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162L] AY.46.1 367 7 1.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,P479S,D614G,P681R,D950N] AY.46.1 367 6 1.6% 1 [T19R,L54F,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.86 346 118 34.1% 0 [T19R,D138Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.86 346 80 23.1% 3 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,A845S,D950N] AY.86 346 40 11.6% 2 [T19R,K77N,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.86 346 21 6.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.86 346 15 4.3% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.123 343 170 49.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1263L] (consensus) AY.123 343 41 12.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,P1263L] AY.123 343 30 8.7% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1263L] AY.123 343 18 5.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,Q1201H,P1263L] AY.123 343 11 3.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162S,P1263L] AY.79 341 171 50.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.79 341 24 7.0% 4 [T19R,D80Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A924S,D950N,K1191N] AY.79 341 17 5.0% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.79 341 7 2.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D950N] AY.79 341 7 2.1% 2 [T19R,S112P,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.54 304 152 50.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.54 304 18 5.9% 3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] AY.54 304 16 5.3% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] AY.54 304 9 3.0% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.54 304 9 3.0% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] AY.23.1 299 216 72.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1234I,V1264L] (consensus) AY.23.1 299 14 4.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1188D,L1234I,V1264L] AY.23.1 299 9 3.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,D950N,L1234I,V1264L] AY.23.1 299 9 3.0% 1 [T19R,G142D,E156G,F157-,R158-,Q239K,L452R,T478K,D614G,P681R,D950N,L1234I,V1264L] AY.23.1 299 6 2.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,I1210T,L1234I,V1264L] AY.46.5 293 236 80.5% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46.5 293 8 2.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.46.5 293 6 2.0% 1 [T19R,G142D,E156G,F157-,R158-,E309Q,L452R,T478K,D614G,P681R,D950N] AY.46.5 293 5 1.7% 1 [T19R,G142D,E156G,F157-,R158-,A348S,L452R,T478K,D614G,P681R,D950N] AY.46.5 293 4 1.4% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I818V,S939F,D950N] AY.30 291 91 31.3% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.30 291 58 19.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.30 291 16 5.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.30 291 11 3.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,D614G,P681R,D950N] AY.30 291 10 3.4% 2 [T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.114 291 189 64.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.114 291 16 5.5% 2 [T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.114 291 8 2.7% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.114 291 5 1.7% 1 [T19R,H69Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.114 291 5 1.7% 1 [T19R,T95I,D138Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.3 290 193 66.6% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.43.3 290 19 6.6% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.3 290 19 6.6% 1 [T19R,G142D,E156G,F157-,R158-,V367L,L452R,T478K,D614G,P681R,D950N] AY.43.3 290 7 2.4% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D1127E] AY.43.3 290 6 2.1% 3 [V6F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1041N,G1046D] AY.46.2 282 54 19.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46.2 282 46 16.3% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] AY.46.2 282 38 13.5% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.46.2 282 24 8.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] AY.46.2 282 11 3.9% 2 [T19R,S98P,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.41 276 130 47.1% 0 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,P681R,D950N,G1167V] (consensus) AY.41 276 37 13.4% 1 [T19R,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,P681R,D950N,G1167V] AY.41 276 15 5.4% 2 [T19R,E156G,F157-,R158-,A262S,L452R,S477I,T478K,Q613H,D614G,P681R,D950N,G1167V] AY.41 276 8 2.9% 1 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,P681R,D950N,G1167V,K1191N] AY.41 276 8 2.9% 1 [T19R,D138Y,G142D,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,P681R,D950N,G1167V] AY.29 267 108 40.4% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.29 267 85 31.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,Q414R,L452R,T478K,D614G,P681R,D950N] AY.29 267 13 4.9% 2 [T19R,T95I,G142D,E156G,F157-,R158-,V308L,Q414R,L452R,T478K,D614G,P681R,D950N] AY.29 267 7 2.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A846G,D950N] AY.29 267 6 2.2% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N,E1202Q] AY.34.1.1 262 129 49.2% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] (consensus) AY.34.1.1 262 14 5.3% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,V1133I,L1265F] AY.34.1.1 262 11 4.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] AY.34.1.1 262 9 3.4% 2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R] AY.34.1.1 262 7 2.7% 1 [T19R,T95I,E156G,F157-,R158-,S349A,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] AY.93 259 190 73.4% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.93 259 16 6.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,A623S,P681R,D950N] AY.93 259 8 3.1% 1 [T19R,S50P,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.93 259 5 1.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1226V] AY.93 259 5 1.9% 1 [T19R,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N] AY.4.3 254 65 25.6% 0 [T19R,P26S,L54F,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.3 254 64 25.2% 2 [T19R,P26S,L54F,T95I,G142D,E156G,F157-,R158-,A262S,L452R,T478K,D614G,P681R,D950N,A1078S] AY.4.3 254 23 9.1% 1 [T19R,P26S,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.3 254 17 6.7% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.3 254 14 5.5% 1 [T19R,P26S,L54F,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.59 252 128 50.8% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.59 252 22 8.7% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.59 252 15 6.0% 7 [T19R,P85T,V90D,Y91D,F92S,S94T,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,E1182Q] AY.59 252 10 4.0% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,S704L,D950N] AY.59 252 6 2.4% 2 [T19R,A93S,G142D,E156G,F157-,R158-,A222V,S256L,L452R,T478K,D614G,P681R,D950N] AY.116.1 243 124 51.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.116.1 243 31 12.8% 1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.116.1 243 13 5.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,M1229I] AY.116.1 243 8 3.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,F306L,L452R,T478K,D614G,P681R,D950N] AY.116.1 243 6 2.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,A570V,D614G,P681R,D950N] AY.4.4 241 100 41.5% 0 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] (consensus) AY.4.4 241 20 8.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] AY.4.4 241 13 5.4% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.4 241 12 5.0% 1 [L5F,T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] AY.4.4 241 10 4.1% 2 [L5F,T19R,G75V,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] AY.24 229 145 63.3% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,M1237I] (consensus) AY.24 229 30 13.1% 1 [T19R,G142D,E156G,F157-,R158-,A222V,G446S,L452R,T478K,D614G,P681R,D950N,M1237I] AY.24 229 11 4.8% 1 [T19R,G142D,E156G,F157-,R158-,A222V,Y265C,L452R,T478K,D614G,P681R,D950N,M1237I] AY.24 229 9 3.9% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,T724A,D950N,M1237I] AY.24 229 6 2.6% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.9 210 86 41.0% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.9 210 14 6.7% 2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,I1169V] AY.9 210 13 6.2% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.9 210 13 6.2% 1 [T19R,G142D,E156G,F157-,R158-,L189F,A222V,L452R,T478K,D614G,P681R,D950N] AY.9 210 11 5.2% 3 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,L948I,D950N,I1169V] AY.106 204 48 23.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] (consensus) AY.106 204 40 19.6% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.106 204 13 6.4% 2 [T19R,T95I,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N,A1087S] AY.106 204 13 6.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N,A1087S] AY.106 204 10 4.9% 1 [T19R,T95I,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] AY.120.1 204 123 60.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.120.1 204 11 5.4% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.120.1 204 8 3.9% 1 [T19R,L54F,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.120.1 204 7 3.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D574Y,D614G,P681R,D950N] AY.120.1 204 7 3.4% 1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.128 199 91 45.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.128 199 29 14.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,T250A,L452R,T478K,D614G,P681R,D950N] AY.128 199 26 13.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.128 199 7 3.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,A653V,P681R,D950N] AY.128 199 3 1.5% 2 [T19R,G142D,E156G,F157-,R158-,L176F,L452R,T478K,D614G,P681R,D950N] AY.14 196 160 81.6% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.14 196 17 8.7% 2 [T19R,L54F,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1063F] AY.14 196 3 1.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] AY.14 196 2 1.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,N1074S] AY.14 196 1 0.5% 1 [T19R,P85S,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.66 191 147 77.0% 0 [T19R,G142D,E156G,F157-,R158-,A222V,A260T,L452R,T478K,D614G,P681R,D950N] (consensus) AY.66 191 9 4.7% 1 [T19R,G142D,E156G,F157-,R158-,A222V,A260T,L452R,T478K,D614G,P681R,T791I,D950N] AY.66 191 9 4.7% 1 [T19R,G142D,E156G,F157-,R158-,A222V,A260T,L452R,T478K,D614G,P681R,D950N,G1124V] AY.66 191 7 3.7% 1 [T19R,G142D,E156G,F157-,R158-,A222V,A260T,L452R,T478K,D614G,P681R,A852V,D950N] AY.66 191 4 2.1% 1 [T19R,V83F,G142D,E156G,F157-,R158-,A222V,A260T,L452R,T478K,D614G,P681R,D950N] AY.104 190 123 64.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] (consensus) AY.104 190 7 3.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,A845S,D950N] AY.104 190 3 1.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,S689I,D950N] AY.104 190 3 1.6% 3 [T19R,H49Y,T95I,G142D,E156G,F157-,R158-,A288S,L452R,T478K,T572I,D614G,P681R,A688S,D950N] AY.104 190 3 1.6% 1 [T19R,R21I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] AY.80 189 61 32.3% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.80 189 50 26.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1020S] AY.80 189 43 22.8% 1 [T19R,T20I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.80 189 5 2.6% 2 [T19R,T20I,G142D,H146Y,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.80 189 5 2.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.119.1 179 65 36.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,I834T,D950N] (consensus) AY.119.1 179 46 25.7% 1 [T19R,T95I,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,I834T,D950N] AY.119.1 179 21 11.7% 2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,I834T,D950N] AY.119.1 179 7 3.9% 1 [T19R,L54F,T95I,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,I834T,D950N] AY.119.1 179 4 2.2% 2 [T19R,T95I,G142D,E156G,F157-,R158-,M177T,A222V,L452R,T478K,D614G,P681R,A684T,I834T,D950N] AY.5.3 178 101 56.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5.3 178 23 12.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.5.3 178 9 5.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,S1021L] AY.5.3 178 5 2.8% 2 [T19R,G142D,Y144-,E156G,F157-,R158-,G261D,L452R,T478K,D614G,P681R,D950N] AY.5.3 178 4 2.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859I,D950N] AY.101 175 79 45.1% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.101 175 21 12.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.101 175 9 5.1% 2 [T19R,T95I,G142D,E156G,F157-,R158-,N440K,L452R,T478K,D614G,P681R,D950N] AY.101 175 8 4.6% 1 [T19R,T95I,E156G,F157-,R158-,N440K,L452R,T478K,D614G,P681R,D950N] AY.101 175 6 3.4% 1 [T19R,T95I,E156G,F157-,R158-,R273K,L452R,T478K,D614G,P681R,D950N] AY.43.2 172 112 65.1% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.43.2 172 14 8.1% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] AY.43.2 172 9 5.2% 1 [T19R,E156G,F157-,R158-,L452R,E471Q,T478K,D614G,P681R,D950N] AY.43.2 172 8 4.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.2 172 7 4.1% 1 [T19R,E156G,F157-,R158-,L452R,S477I,T478K,D614G,P681R,D950N] AY.72 168 113 67.3% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.72 168 20 11.9% 1 [T19R,G142D,E156G,F157-,R158-,F201L,A222V,L452R,T478K,D614G,P681R,D950N] AY.72 168 6 3.6% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.72 168 3 1.8% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1122L] AY.72 168 3 1.8% 1 [L5-,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.124.1 162 69 42.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.124.1 162 22 13.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.124.1 162 20 12.3% 1 [L18F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.124.1 162 6 3.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,M1229I] AY.124.1 162 5 3.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.57 161 107 66.5% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.57 161 10 6.2% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,T676A,P681R,D950N] AY.57 161 2 1.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.57 161 2 1.2% 2 [T19R,V120F,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,G1124V] AY.57 161 2 1.2% 1 [T19R,V70F,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.84 156 73 46.8% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.84 156 43 27.6% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.84 156 7 4.5% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] AY.84 156 3 1.9% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.84 156 2 1.3% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1263L] AY.42.1 156 138 88.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T719I,L938F,D950N] (consensus) AY.42.1 156 7 4.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,T719I,L938F,D950N] AY.42.1 156 5 3.2% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,L938F,D950N] AY.42.1 156 4 2.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T719I,T723I,L938F,D950N] AY.42.1 156 1 0.6% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,L938F,D950N,G1251V] AY.122.1 154 58 37.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T791I,D950N] (consensus) AY.122.1 154 20 13.0% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T791I,D950N] AY.122.1 154 12 7.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T791I,D950N,L1049I] AY.122.1 154 9 5.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.122.1 154 4 2.6% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.108 153 73 47.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N,V1176F] (consensus) AY.108 153 34 22.2% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.108 153 20 13.1% 3 [T19R,T95I,G142D,E156G,F157-,R158-,Y248H,L452R,T478K,D614G,P681R,D950N] AY.108 153 6 3.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,A243V,L452R,T478K,E484Q,D614G,P681R,D950N,V1176F] AY.108 153 4 2.6% 3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] AY.34.2 153 99 64.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,T859I,D950N] (consensus) AY.34.2 153 13 8.5% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,T859I,D950N,A1020S] AY.34.2 153 6 3.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,S256L,L452R,T478K,D614G,Q677H,P681R,T859I,D950N] AY.34.2 153 4 2.6% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] AY.34.2 153 3 2.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,T859I,D950N,T1117I] AY.76 149 67 45.0% 0 [T19R,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N] (consensus) AY.76 149 23 15.4% 1 [T19R,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,V826L,D950N] AY.76 149 8 5.4% 1 [T19R,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N,G1219C] AY.76 149 7 4.7% 1 [T19R,V70I,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N] AY.76 149 6 4.0% 1 [T19R,G142D,E156G,F157-,R158-,Q173H,T307I,L452R,T478K,D614G,P681R,D950N] AY.78 144 28 19.4% 0 [T19R,H69Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.78 144 17 11.8% 3 [T19R,T95I,G142D,Y144-,E156G,F157-,R158-,A288V,L452R,T478K,D614G,P681R,D950N] AY.78 144 14 9.7% 3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I834V,D950N] AY.78 144 13 9.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.78 144 11 7.6% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.70 140 42 30.0% 0 [T19R,R21T,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.70 140 34 24.3% 1 [T19R,R21T,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.70 140 28 20.0% 2 [T19R,R21T,G142D,E156G,F157-,R158-,A222V,L452R,T478K,E484Q,Q613H,D614G,P681R,D950N] AY.70 140 8 5.7% 3 [T19R,R21T,E156G,F157-,R158-,A222V,L452R,T478K,E484Q,Q613H,D614G,P681R,D950N] AY.70 140 4 2.9% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.39.1.3 138 107 77.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162A] (consensus) AY.39.1.3 138 13 9.4% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162A] AY.39.1.3 138 8 5.8% 1 [T19R,T76I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162A] AY.39.1.3 138 2 1.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,D215Y,L452R,T478K,D614G,P681R,D950N,P1162A] AY.39.1.3 138 2 1.4% 3 [L5F,T19R,R21T,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162S] AY.7 133 64 48.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.7 133 48 36.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T747I,D950N] AY.7 133 9 6.8% 1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.7 133 2 1.5% 2 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T941I,D950N] AY.7 133 2 1.5% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P812L,D950N] AY.51 131 48 36.6% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N] (consensus) AY.51 131 39 29.8% 1 [T19R,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N] AY.51 131 13 9.9% 2 [T19R,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N,D1084Y] AY.51 131 4 3.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N,D1084Y] AY.51 131 3 2.3% 2 [T19R,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,I834S,D950N] AY.1 128 81 63.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] (consensus) AY.1 128 6 4.7% 1 [V16A,T19R,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] AY.1 128 3 2.3% 1 [T19R,T95I,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] AY.1 128 3 2.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,N188Y,W258L,K417N,L452R,T478K,D614G,P681R,D950N] AY.1 128 3 2.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N,L1024I] AY.43.1 124 87 70.2% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.43.1 124 9 7.3% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] AY.43.1 124 5 4.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.1 124 5 4.0% 1 [T19R,S98F,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.43.1 124 2 1.6% 3 [T19R,S98F,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,Q926L,D950N] AY.4.7 121 55 45.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.7 121 13 10.7% 3 [T19R,G142D,E156G,F157-,R158-,V213M,N354K,L452R,T478K,D614G,P681R,D950N] AY.4.7 121 12 9.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.7 121 10 8.3% 1 [T19I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.4.7 121 6 5.0% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.116 117 47 40.2% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.116 117 15 12.8% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.116 117 14 12.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162L] AY.116 117 9 7.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,V772I,D950N] AY.116 117 4 3.4% 1 [T19R,F79L,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.73 110 41 37.3% 0 [T19R,G142D,E156G,F157-,R158-,I210V,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.73 110 23 20.9% 2 [T19R,G142D,W152L,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.73 110 11 10.0% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.73 110 5 4.5% 2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.73 110 5 4.5% 1 [T19R,E156G,F157-,R158-,I210V,A222V,L452R,T478K,D614G,P681R,D950N] AY.122.2 104 59 56.7% 0 [T19R,G142D,E156G,F157-,R158-,A411S,L452R,T478K,D614G,P681R,D950N] (consensus) AY.122.2 104 12 11.5% 1 [T19R,G142D,E156G,F157-,R158-,A411S,L452R,T478K,D614G,P681R,D950N,T1117I] AY.122.2 104 4 3.8% 1 [T19R,G142D,E156G,F157-,R158-,E324K,A411S,L452R,T478K,D614G,P681R,D950N] AY.122.2 104 3 2.9% 1 [T19R,G142D,E156G,F157-,R158-,A411S,L452R,T478K,D614G,P681R,D950N,H1101Y] AY.122.2 104 2 1.9% 3 [T19R,T29I,G142D,E156G,F157-,R158-,K424N,L452R,T478K,D614G,P681R,D950N] AY.123.1 103 45 43.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N,P1263L] (consensus) AY.123.1 103 20 19.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1263L] AY.123.1 103 17 16.5% 2 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1263L] AY.123.1 103 7 6.8% 1 [T19R,T95I,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N,P1263L] AY.123.1 103 3 2.9% 4 [T19R,T22I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.133 100 52 52.0% 0 [N17K,L18F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P499R,D614G,P681R,D950N,V1264L] (consensus) AY.133 100 15 15.0% 4 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.133 100 9 9.0% 1 [N17K,L18F,T19R,E156G,F157-,R158-,A222V,L452R,T478K,P499R,D614G,P681R,D950N,V1264L] AY.133 100 6 6.0% 1 [N17K,L18F,T19R,G142D,E156G,F157-,R158-,E180A,A222V,L452R,T478K,P499R,D614G,P681R,D950N,V1264L] AY.133 100 2 2.0% 5 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1128L,V1264L] AY.7.2 99 43 43.4% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.7.2 99 31 31.3% 1 [V16F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.7.2 99 3 3.0% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219C,M1237I] AY.7.2 99 2 2.0% 1 [T19R,G142D,E156G,F157-,R158-,Y269H,L452R,T478K,D614G,P681R,D950N] AY.7.2 99 2 2.0% 2 [T19R,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] AY.131 98 24 24.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,N501T,D614G,P681R,D950N] (consensus) AY.131 98 12 12.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,E484Q,N501T,D614G,P681R,D950N] AY.131 98 8 8.2% 1 [T19R,T95I,E156G,F157-,R158-,G446V,L452R,T478K,N501T,D614G,P681R,D950N] AY.131 98 5 5.1% 6 [T19R,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,E156G,F157-,R158-,G446V,L452R,T478K,N501T,D614G,P681R,D950N] AY.131 98 4 4.1% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.16 98 44 44.9% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.16 98 29 29.6% 2 [T19R,G142D,Y144-,E156G,F157-,R158-,D215H,L452R,T478K,D614G,P681R,D950N] AY.16 98 8 8.2% 3 [T19R,G142D,Y144-,E156G,F157-,R158-,D215H,L452R,T478K,D614G,P681R,D950N,E1262D] AY.16 98 3 3.1% 3 [T19R,G75V,G142D,Y144-,E156G,F157-,R158-,D215H,L452R,T478K,D614G,P681R,D950N] AY.16 98 2 2.0% 1 [T19R,I100T,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] B.1.640.1 97 78 80.4% 0 [P9L,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H] (consensus) B.1.640.1 97 4 4.1% 1 [P9L,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936Y] B.1.640.1 97 3 3.1% 1 [P9L,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,S704L,T859N,D936H] B.1.640.1 97 2 2.1% 1 [P9L,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T761S,T859N,D936H] B.1.640.1 97 2 2.1% 1 [P9L,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H,G1124V] AY.9.2.2 97 73 75.3% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,Q675K,P681R,D950N] (consensus) AY.9.2.2 97 7 7.2% 1 [T19R,G142D,E156G,F157-,R158-,G181V,A222V,L452R,T478K,D614G,Q675K,P681R,D950N] AY.9.2.2 97 5 5.2% 1 [T19R,G142D,E156G,F157-,R158-,A222V,T299I,L452R,T478K,D614G,Q675K,P681R,D950N] AY.9.2.2 97 3 3.1% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,Q675K,P681R,D950N,M1237I] AY.9.2.2 97 3 3.1% 1 [L5F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,Q675K,P681R,D950N] AY.43.5 93 74 79.6% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,N501S,D614G,P681R,D950N] (consensus) AY.43.5 93 12 12.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,N501S,D614G,P681R,D950N] AY.43.5 93 1 1.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,N501S,D614G,Q675H,P681R,D950N] AY.43.5 93 1 1.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,N501S,D614G,P681R,P812L,D950N] AY.43.5 93 1 1.1% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,N501S,D614G,P681R,T716I,D950N] AY.32 89 35 39.3% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] (consensus) AY.32 89 9 10.1% 1 [T19R,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] AY.32 89 7 7.9% 4 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] AY.32 89 7 7.9% 3 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.32 89 3 3.4% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.45 85 52 61.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.45 85 6 7.1% 2 [T19R,G142D,E156G,F157-,R158-,K278N,L452R,T478K,D614G,P681R,A879S,D950N] AY.45 85 4 4.7% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.45 85 2 2.4% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.45 85 2 2.4% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T747I,D936N,D950N] AY.28 82 53 64.6% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A701S,D950N,A1078S] (consensus) AY.28 82 3 3.7% 3 [T19R,L24F,G142D,M153I,E156G,F157-,R158-,A222V,L452R,T478K,D574N,D614G,P681R,A701S,D950N,A1078S] AY.28 82 2 2.4% 2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,T547I,D614G,P681R,A701S,D950N,A1078S,E1111Q] AY.28 82 2 2.4% 2 [T19R,G142D,Y144-,E156G,F157-,R158-,A222V,T376I,L452R,T478K,D614G,P681R,A701S,D950N,A1078S] AY.28 82 1 1.2% 3 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.13 80 53 66.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.13 80 8 10.0% 1 [T19R,F32Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.13 80 5 6.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1084V] AY.13 80 2 2.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104I] AY.13 80 2 2.5% 3 [T19R,F32Y,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1258D] AY.35 72 61 84.7% 0 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N] (consensus) AY.35 72 5 6.9% 1 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D808E,D950N] AY.35 72 2 2.8% 1 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N,P1263L] AY.35 72 1 1.4% 6 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,V622L,P681R,D796Y,N856K,A879S,D950N] AY.35 72 1 1.4% 2 [T19R,K77T,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,A684V,D950N] AY.46.3 63 13 20.6% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46.3 63 8 12.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.46.3 63 5 7.9% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S704A,D936Y,D950N,V1264L] AY.46.3 63 4 6.3% 1 [T19R,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] AY.46.3 63 4 6.3% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] AY.43.7 62 42 67.7% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] (consensus) AY.43.7 62 4 6.5% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F] AY.43.7 62 4 6.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] AY.43.7 62 3 4.8% 1 [T19R,T33I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] AY.43.7 62 1 1.6% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.58 61 25 41.0% 0 [T19R,G142D,E156G,F157-,R158-,A222V,S373P,L452R,T478K,D614G,P681R,D950N] AY.58 61 18 29.5% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.58 61 6 9.8% 2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.58 61 2 3.3% 2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P479S,D614G,P681R,D950N] AY.58 61 1 1.6% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.99.1 59 16 27.1% 0 [T19R,G142D,E156G,F157-,R158-,D427G,L452R,T478K,D614G,P681R,D950N] AY.99.1 59 10 16.9% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.99.1 59 8 13.6% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.99.1 59 4 6.8% 3 [T19R,E156G,F157-,R158-,L452R,S459F,T478K,D614G,P681R,D950N] AY.99.1 59 3 5.1% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] AY.91 57 17 29.8% 0 [T19R,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.91 57 12 21.1% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.91 57 10 17.5% 1 [T19R,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] AY.91 57 6 10.5% 2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.91 57 4 7.0% 4 [T19R,G142D,E156G,F157-,R158-,Y200H,L212V,L452R,T478K,D614G,P681R,D950N] AY.65 57 27 47.4% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus) AY.65 57 9 15.8% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.65 57 5 8.8% 3 [T19R,G142D,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.65 57 2 3.5% 2 [T19R,T95I,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] AY.65 57 2 3.5% 2 [T19R,G142D,E156G,F157-,R158-,G184V,A222V,L452R,T478K,K558N,D614G,P681R,D950N,V1264L] AY.61 57 15 26.3% 0 [T19R,K77T,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N] AY.61 57 8 14.0% 4 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.61 57 6 10.5% 4 [T19R,P85S,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.61 57 6 10.5% 3 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.61 57 2 3.5% 6 [T19R,D138H,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,P812S,D820N,D950N] AY.94 54 12 22.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,A475V,T478K,D614G,P681R,D950N] AY.94 54 11 20.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.94 54 9 16.7% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.94 54 3 5.6% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D808N,D950N] AY.94 54 3 5.6% 2 [T19R,G142D,E156G,F157-,R158-,D215Y,L452R,T478K,D614G,P681R,D950N] AY.64 54 31 57.4% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] (consensus) AY.64 54 7 13.0% 2 [T19R,G142D,E156G,F157-,R158-,F186L,A222V,T385I,L452R,T478K,D614G,P681R,D950N,K1191N] AY.64 54 3 5.6% 1 [T19R,A27S,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] AY.64 54 2 3.7% 2 [L5F,T19R,G142D,H146L,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] AY.64 54 2 3.7% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] AY.87 53 29 54.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.87 53 8 15.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.87 53 2 3.8% 1 [V11F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.87 53 1 1.9% 2 [T19R,E156G,F157-,R158-,S162G,L452R,T478K,D614G,P681R,D950N] AY.87 53 1 1.9% 3 [T19R,E156G,F157-,R158-,L452R,T478K,V512I,D614G,P681R,I834V,D950N] AY.9.2.1 48 38 79.2% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.9.2.1 48 10 20.8% 2 [T19R,G142D,E156G,F157-,R158-,A222V,S373L,G446V,L452R,T478K,D614G,P681R,D950N] AY.127.1 48 35 72.9% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D950N] (consensus) AY.127.1 48 8 16.7% 3 [T19R,T95I,G142D,V143F,M153I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D936N,D950N] AY.127.1 48 3 6.2% 2 [T19R,T95I,G142D,M153I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.127.1 48 1 2.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D950N,G1099D] AY.127.1 48 1 2.1% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,R634H,P681R,T859N,D950N] AY.83 45 38 84.4% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.83 45 1 2.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1058R] AY.83 45 1 2.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,V615F,P681R,D950N] AY.83 45 1 2.2% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.83 45 1 2.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] B.1.637.1 41 41 100.0% 0 [H69-,V70-,D80G,E96Q,Y144-,F157S,L244-,H245Y,R246-,S247-,Y248-,A264V,G446R,L452R,T478R,D614G,P681R,T859N,D936H,D950H,N978S] (consensus) AY.67 41 26 63.4% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.67 41 4 9.8% 3 [T19R,G142D,E156G,F157-,R158-,A222V,A262S,L452R,T478K,D614G,P681R,D950N] AY.67 41 3 7.3% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.67 41 2 4.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1085R] AY.67 41 1 2.4% 2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.46.6.1 41 26 63.4% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.46.6.1 41 10 24.4% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.46.6.1 41 1 2.4% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.46.6.1 41 1 2.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,H655Y,P681R,D950N] AY.46.6.1 41 1 2.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1262A] AY.89 41 13 31.7% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.89 41 11 26.8% 1 [L18F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.89 41 5 12.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,C1236F] AY.89 41 2 4.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D936H,D950N] AY.89 41 1 2.4% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P812S,D950N,V1104L] AY.120.2 41 14 34.1% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796N,D950N] AY.120.2 41 13 31.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.120.2 41 9 22.0% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S689N,D950N] AY.120.2 41 2 4.9% 5 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] AY.120.2 41 1 2.4% 3 [T19R,T95I,G142D,E156G,F157-,R158-,Q183E,L452R,T478K,D614G,P681R,S689N,D950N] AY.88 38 24 63.2% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.88 38 2 5.3% 2 [T19R,G75V,G142D,E156G,F157-,R158-,L452R,T478K,S494P,D614G,P681R,D950N] AY.88 38 2 5.3% 1 [T19R,G75V,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.88 38 1 2.6% 5 [L452R,T478K,D614G,P681R,D950N] AY.88 38 1 2.6% 1 [G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.77 38 15 39.5% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.77 38 3 7.9% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.77 38 3 7.9% 3 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N] AY.77 38 3 7.9% 2 [V3A,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.77 38 3 7.9% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,G482R,D614G,P681R,D950N] AY.105 37 12 32.4% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.105 37 6 16.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] AY.105 37 6 16.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,R214L,L452R,T478K,D614G,P681R,D950N] AY.105 37 4 10.8% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.105 37 2 5.4% 2 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] AY.33.1 37 30 81.1% 0 [T19R,T29A,H49Y,G142D,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,E654K,P681R,D950N] (consensus) AY.33.1 37 2 5.4% 1 [T19R,T29A,H49Y,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,E654K,P681R,D950N] AY.33.1 37 1 2.7% 1 [T19R,T29A,H49Y,G142D,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,E654K,P681R,D950N,G1246S] AY.33.1 37 1 2.7% 1 [T19R,T29A,H49Y,V62L,G142D,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,E654K,P681R,D950N] AY.33.1 37 1 2.7% 1 [F4I,T19R,T29A,H49Y,G142D,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,E654K,P681R,D950N] AY.37 35 9 25.7% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P479S,D614G,P681R,G798S,D950N] AY.37 35 9 25.7% 3 [T19R,G142D,E156G,F157-,R158-,A222V,V367L,L452R,T478K,D614G,P681R,D950N] AY.37 35 5 14.3% 2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.37 35 2 5.7% 4 [T19R,G142D,E156G,F157-,R158-,A222V,V367L,L452R,T478K,D614G,P681R,D950N,L1203F] AY.37 35 2 5.7% 4 [L5F,T19R,G142D,E156G,F157-,R158-,A222V,V367L,L452R,T478K,D614G,P681R,D950N] AY.99 34 23 67.6% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.99 34 3 8.8% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,E780K,D950N] AY.99 34 2 5.9% 1 [T19R,G142D,E156G,F157-,R158-,P330S,L452R,T478K,D614G,P681R,D950N] AY.99 34 2 5.9% 4 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A845V,G932V] AY.99 34 1 2.9% 5 [T19R,E156-,F157-,R158G,L452R,T478K,D614G,P681R,G932V] AY.102.2 34 16 47.1% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.102.2 34 5 14.7% 1 [T19R,T95I,E156G,F157-,R158-,T259A,L452R,T478K,D614G,P681R,D950N] AY.102.2 34 3 8.8% 1 [T19R,T95I,E156G,F157-,R158-,A264S,L452R,T478K,D614G,P681R,D950N] AY.102.2 34 2 5.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.102.2 34 2 5.9% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264A] AY.60 33 18 54.5% 0 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.60 33 5 15.2% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] AY.60 33 2 6.1% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,M1237I] AY.60 33 2 6.1% 1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,S939F,D950N] AY.60 33 1 3.0% 3 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D808E,K921R,D950N,V1177L] AY.20.1 32 13 40.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus) AY.20.1 32 6 18.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N,V1104L] AY.20.1 32 5 15.6% 2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,V1104L] AY.20.1 32 2 6.2% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,V1104L] AY.20.1 32 2 6.2% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] B.1.1 29 15 51.7% 0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,T547K,D614G,H655Y,N679K,P681H,N856K,Q954H,N969K,L981F] (consensus) B.1.1 29 3 10.3% 5 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,T547K,D614G,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.1 29 2 6.9% 16 [D138N,D614G,P681H] B.1.1 29 1 3.4% 14 [N856K,Q954H,N969K] B.1.1 29 1 3.4% 6 [A67V,H69-,V70-,T95I,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] AY.5.5 29 26 89.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5.5 29 1 3.4% 5 [T95I,G142D,L452R,T478K,D614G,P681R,D950N] AY.5.5 29 1 3.4% 4 [T19R,H69-,V70-,G142D,W152L,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219C] AY.5.5 29 1 3.4% 3 [T19R,H69-,V70-,G142D,Y144-,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.25.1.1 29 19 65.5% 0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796Y,D950N] (consensus) AY.25.1.1 29 3 10.3% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796Y,D950N] AY.25.1.1 29 2 6.9% 1 [T19R,E156G,F157-,R158-,S373P,L452R,T478K,D614G,P681R,D796Y,D950N] AY.25.1.1 29 2 6.9% 1 [T19R,E156G,F157-,R158-,V367L,L452R,T478K,D614G,P681R,D796Y,D950N] AY.25.1.1 29 1 3.4% 2 [T19R,E156G,F157-,R158-,L452R,T478K,P479L,D614G,P681R,D796Y,S940F,D950N] AY.68 29 13 44.8% 0 [T19R,G142D,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,P809S,D950N,D979E] (consensus) AY.68 29 2 6.9% 1 [T19R,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,P809S,D950N,D979E] AY.68 29 2 6.9% 1 [T19R,P26S,G142D,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,P809S,D950N,D979E] AY.68 29 2 6.9% 4 [T19R,E156G,F157-,R158-,N211K,A222V,D253A,V267L,L452R,T478K,D614G,P681R,D950N,D979E] AY.68 29 1 3.4% 3 [T19R,I100L,G142D,M153I,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,D950N,D979E] AY.81 27 20 74.1% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,D950N,D1260Y] (consensus) AY.81 27 3 11.1% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1260Y] AY.81 27 2 7.4% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,M731I,D950N,D1260Y] AY.81 27 1 3.7% 1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,D950N,D1260Y] AY.81 27 1 3.7% 3 [T19R,H69-,V70-,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,D950N,D1260Y] AY.29.1 25 10 40.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N] (consensus) AY.29.1 25 3 12.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,Q173H,D215Y,L452R,T478K,D614G,P681R,D950N] AY.29.1 25 2 8.0% 1 [T19R,T95I,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N,T1120I] AY.29.1 25 1 4.0% 2 [T19R,T95I,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,P499H,D614G,P681R,Q935R,D950N] AY.29.1 25 1 4.0% 1 [T19R,T95I,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N] B 22 11 50.0% 0 [] (consensus) B 22 2 9.1% 1 [D950N] B 22 1 4.5% 2 [T95I,S247R] B 22 1 4.5% 3 [D614G,P681R,D950N] B 22 1 4.5% 1 [T19R] B.1.1.7 22 9 40.9% 0 [H69-,V70-,Y144-,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] (consensus) B.1.1.7 22 3 13.6% 2 [H69-,V70-,Y144-,W152R,Q493R,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] B.1.1.7 22 3 13.6% 1 [L5F,H69-,V70-,Y144-,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] B.1.1.7 22 2 9.1% 2 [H69-,V70-,Y144-,S325F,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H,K1191N] B.1.1.7 22 2 9.1% 1 [H69-,V70-,Y144-,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H,I1183V] AY.4.1 21 16 76.2% 0 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.4.1 21 4 19.0% 3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1139N] AY.4.1 21 1 4.8% 1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N,G1124V] AY.3.2 17 10 58.8% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.3.2 17 2 11.8% 2 [T19R,G142D,E156G,F157-,R158-,T259I,L452R,T478K,D614G,P681R,A942T,D950N] AY.3.2 17 1 5.9% 3 [T19R,E156G,F157-,R158-,T259I,L452R,T478K,D614G,P681R,A942T,D950N] AY.3.2 17 1 5.9% 4 [L5F,T19R,E156G,F157-,R158-,T259I,L452R,T478K,D614G,P681R,A942T,D950N] AY.3.2 17 1 5.9% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.5.1 16 12 75.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5.1 16 2 12.5% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859I,D950N] AY.5.1 16 1 6.2% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] AY.5.1 16 1 6.2% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219C] BA.3 15 13 86.7% 0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211I,L212-,G339D,S371F,S373P,S375F,D405N,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) BA.3 15 1 6.7% 5 [A67V,H69-,V70-,T95I,L141F,N211I,L212-,G339D,S371F,S373P,S375F,D405N,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.3 15 1 6.7% 1 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211I,L212-,A222V,G339D,S371F,S373P,S375F,D405N,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.95 15 4 26.7% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1167V] AY.95 15 2 13.3% 4 [T19R,T95I,G142D,E156G,F157-,R158-,N211Y,L452R,T478K,D614G,P681R,A688V,D950N] AY.95 15 2 13.3% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.95 15 2 13.3% 3 [T19R,G142D,E156G,F157-,R158-,L244S,L452R,T478K,T572I,D614G,P681R,D950N] AY.95 15 1 6.7% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5.2 15 9 60.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.5.2 15 6 40.0% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.22 15 8 53.3% 0 [T19R,T95I,G142D,E156G,F157-,R158-,Q218H,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus) AY.22 15 2 13.3% 4 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,Q677H,P681R,D950N] AY.22 15 2 13.3% 2 [T19R,T95I,G142D,M153T,E156G,F157-,R158-,Q218H,L452R,T478K,D614G,P681R,A688V,D950N,V1104L] AY.22 15 1 6.7% 4 [T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.22 15 1 6.7% 1 [T19R,T95I,G142D,E156G,F157-,R158-,Q218H,L452R,T478K,D614G,P681R,A688V,D950N,V1104L] AY.120.2.1 15 7 46.7% 0 [T19R,H66Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.120.2.1 15 4 26.7% 1 [T19R,H66Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,C1248F] AY.120.2.1 15 2 13.3% 1 [T19R,H66Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.120.2.1 15 1 6.7% 2 [T19R,H66Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] AY.120.2.1 15 1 6.7% 1 [T19R,H66Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A879S,D950N] B.1.258.17 14 11 78.6% 0 [H69-,V70-,L189F,N439K,D614G,V772I] (consensus) B.1.258.17 14 1 7.1% 1 [L54F,H69-,V70-,L189F,N439K,D614G,V772I] B.1.258.17 14 1 7.1% 1 [H69-,V70-,L189F,I197V,N439K,D614G,V772I] B.1.258.17 14 1 7.1% 1 [H69-,V70-,L189F,N439K,D614G,V772I,Q836L] AY.102.1 14 3 21.4% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219V] (consensus) AY.102.1 14 3 21.4% 1 [T19R,T95I,E156G,F157-,R158-,I233V,L452R,T478K,D614G,P681R,D950N,G1219V] AY.102.1 14 2 14.3% 5 [T19R,T95I,E156G,F157-,R158-,G261A,A262-,A263-,+283TI,L452R,T478K,D614G,P681R,D950N,G1219V] AY.102.1 14 2 14.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219V] AY.102.1 14 1 7.1% 1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,T588A,D614G,P681R,D950N,G1219V] B.1.466.2 13 7 53.8% 0 [N439K,D614G,P681R] (consensus) B.1.466.2 13 1 7.7% 1 [N439K,D614G,P681R,S1252F] B.1.466.2 13 1 7.7% 1 [L5F,N439K,D614G,P681R] B.1.466.2 13 1 7.7% 1 [N439K,D614G,P681R,T1076I] B.1.466.2 13 1 7.7% 1 [N439K,D614G,P681R,P1162S] AY.56 13 12 92.3% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,S680F,P681R,D950N] (consensus) AY.56 13 1 7.7% 5 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,V622F,P681R,D950N] B.1.1.10 12 1 8.3% 0 [T95I,G142D,V143-,Y144-,Y145-,L452R,T478K,D614G,P681R,D796Y,N856K,Q954H,N969K,L981F] B.1.1.10 12 1 8.3% 7 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,L452R,T478K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.1.10 12 1 8.3% 8 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,L452R,T478K,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.1.10 12 1 8.3% 10 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,E156G,F157-,R158-,L452R,T478K,T547K,D614G,H655Y,N679K,P681H,D796Y,N856K,Q954H,N969K,L981F] B.1.1.10 12 1 8.3% 16 [T19R,A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,E156G,F157-,R158-,G339D,R346K,T478K,D614G,H655Y,N679K,P681H,N856K,Q954H] AY.62 12 7 58.3% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.62 12 1 8.3% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N978S] AY.62 12 1 8.3% 2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A706S,D950N,V1264L] AY.62 12 1 8.3% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,G1219V] AY.62 12 1 8.3% 3 [T19R,Y144-,H146Y,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] P.1.12.1 11 11 100.0% 0 [L18F,T20N,P26S,D138Y,R190S,R246G,T284I,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] (consensus) B.1.1.519 11 1 9.1% 0 [T19R,A67V,T95I,Y144-,+214EPE,G339D,S375F,K417N,N440K,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681R] B.1.1.519 11 1 9.1% 11 [T95I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,P681H] B.1.1.519 11 1 9.1% 19 [G142D,E156G,F157-,R158-,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,D614G,P681H] B.1.1.519 11 1 9.1% 18 [T19R,T95I,G142D,E156G,F157-,R158-,S371L,S373P,S375F,N440K,G446S,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,P681H] B.1.1.519 11 1 9.1% 27 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,L452R,T478K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] AY.53 10 3 30.0% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.53 10 2 20.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.53 10 2 20.0% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1150D] AY.53 10 1 10.0% 5 [T19R,L452R,T478K,D614G,P681R,D950N] AY.53 10 1 10.0% 2 [T19R,A27S,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] C.37 10 3 30.0% 0 [G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,P792L,T859N] C.37 10 1 10.0% 12 [G75V,T76I,Y144-,A262V,L452Q,F490S,D614G,P681R,T859N] C.37 10 1 10.0% 3 [G75V,T76I,N121D,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,T572I,D614G,T859N] C.37 10 1 10.0% 4 [T22I,G75V,T76I,L176F,N185Y,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,T859N] C.37 10 1 10.0% 9 [T19I,H69-,V70-,S71F,G75V,T76I,T95I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,V595I,D614G,N679K,T859N] AY.71 10 7 70.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,Q677H,P681R,D950N] (consensus) AY.71 10 1 10.0% 4 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,S1252F] AY.71 10 1 10.0% 6 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,S1252F] AY.71 10 1 10.0% 7 [N17K,L18F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P499R,D614G,P681R,D950N,V1264L] AY.48 8 2 25.0% 0 [T19R,E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] (consensus) AY.48 8 2 25.0% 2 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] AY.48 8 1 12.5% 3 [T19R,L452R,T478K,T547I,D614G,P681R,D950N] AY.48 8 1 12.5% 1 [E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] AY.48 8 1 12.5% 5 [T19R,G75V,T95I,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] BB.1 7 4 57.1% 0 [T95I,Y144N,Y145-,R346K,Y449N,E484K,N501Y,E583D,D614G,P681H,D950N] (consensus) BB.1 7 2 28.6% 1 [T95I,Y144N,Y145-,W152L,R346K,Y449N,E484K,N501Y,E583D,D614G,P681H,D950N] BB.1 7 1 14.3% 2 [T95I,Y144N,Y145-,R346K,Y449N,E484K,N501Y,T573I,E583D,D614G,P681H,A688S,D950N] AY.49 7 2 28.6% 0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q493R,D614G,P681R,D950N] AY.49 7 1 14.3% 13 [T19R,T95I,G142D,V143D,Y144-,N211-,L212I,+214EPE,N440K,L452R,T478K,Q498R,D614G,P681R,D950N] AY.49 7 1 14.3% 2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q498R,D614G,P681R,D950N] AY.49 7 1 14.3% 2 [T19R,T95I,G142D,E156G,F157-,R158-,T299-,L452R,T478K,D614G,P681R,D950N] AY.49 7 1 14.3% 1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.26.1 7 5 71.4% 0 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,E484Q,D614G,P681R,D950N,T1009S,V1264L] (consensus) AY.26.1 7 2 28.6% 1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,E484Q,D614G,P681R,D950N,T1009S,V1264L] A 6 5 83.3% 0 [I68K,H69-,V70-,S71-,G72-,T73-,N74-,G75R,T76-,K77-,R78-,N679-,S680-,P681S,R682-,R683-,A684-,R685-,S686-,V687-,A688-,S689-] (consensus) A 6 1 16.7% 22 [] P.1.12 6 3 50.0% 0 [L18F,T20N,P26S,D138Y,R190S,R246G,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] (consensus) P.1.12 6 2 33.3% 6 [L18F,T20N,P26S,D138Y,R246G,G261A,A262-,A263-,+284II,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] P.1.12 6 1 16.7% 1 [L18F,T20N,P26S,S98F,D138Y,R190S,R246G,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] AY.2 6 2 33.3% 0 [T19R,V70F,G142D,E156G,F157-,R158-,A222V,K417N,L452R,T478K,D614G,P681R,D950N,V1228L] AY.2 6 2 33.3% 3 [T19R,V70F,G142D,E156G,F157-,R158-,I210V,A222V,K417N,N439K,L452R,T478K,D614G,P681R,D950N] AY.2 6 1 16.7% 1 [T19R,V70F,G142D,E156G,F157-,R158-,A222V,K417N,L452R,T478K,D614G,P681R,D950N] (consensus) AY.2 6 1 16.7% 4 [T19R,V70F,G142D,E156G,F157-,R158-,I210V,A222V,K417N,N439K,L452R,T478K,D614G,P681R,D950N,L1200F] B.1 5 2 40.0% 0 [L452R,T478K,D614G,P681R,D950N] (consensus) B.1 5 1 20.0% 2 [T19R,T478K,D614G,P681R,D950N] B.1 5 1 20.0% 17 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,T547K,D614G,N856K,Q954H,N969K,L981F] B.1 5 1 20.0% 3 [T19R,L452R,T478K,P479S,D614G,P681R] B.1.621 5 3 60.0% 0 [T95I,+143T,Y144S,Y145N,R346K,E484K,N501Y,D614G,P681H,D950N] (consensus) B.1.621 5 1 20.0% 5 [T95I,Y144N,Y145-,R346K,Y449N,E484K,N501Y,E583D,D614G,P681H,D950N] B.1.621 5 1 20.0% 3 [L5F,T95I,G142R,+143T,Y144S,Y145N,R346K,N394D,E484K,N501Y,D614G,P681H,D950N] AY.91.1 5 2 40.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.91.1 5 1 20.0% 2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.91.1 5 1 20.0% 1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.91.1 5 1 20.0% 1 [T19R,G142D,E156G,F157-,R158-,T323I,L452R,T478K,D614G,P681R,D950N] AY.96 5 2 40.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] AY.96 5 1 20.0% 2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,G932V,D950N] AY.96 5 1 20.0% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S704L] AY.96 5 1 20.0% 3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,Q836L] AY.38 5 5 100.0% 0 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N] (consensus) P.1 4 1 25.0% 0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,P600T,D614G,H655Y,G669D,I670-,C671-,A672-,S673-,Y674-,Q675-,T676-,Q677-,T678-,N679-,T1027I,V1176F] P.1 4 1 25.0% 12 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] (consensus) P.1 4 1 25.0% 14 [L18F,T20N,P26S,R190S,K417T,E484K,N501Y,D614G,H655Y,V1176F] P.1 4 1 25.0% 14 [L18F,T20N,P26S,D138Y,R190S,L216F,K417T,E484K,N501Y,D614G,H655Y,P681R,T1027I,V1176F] P.1.7.1 4 4 100.0% 0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] (consensus) AY.23.2 4 2 50.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,E702V,D950N,V1264L] (consensus) AY.23.2 4 1 25.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,E702V,T716I,D950N,V1264L] AY.23.2 4 1 25.0% 4 [T19R,K77E,E156G,F157-,R158-,L452R,T478K,D614G,P681R,E702V] AY.82 4 3 75.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.82 4 1 25.0% 1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,L513F,D614G,P681R,D950N] B.1.438.1 3 1 33.3% 0 [L244F,H245-,S477N,G504D,D614G,H655Y,Q675H,D737Y,D796Y] B.1.438.1 3 1 33.3% 13 [P25T,G232S,H245Y,Y453F,E484K,Q493E,D614G,Q675H,K814R] B.1.438.1 3 1 33.3% 23 [T19I,F140-,L141-,G142-,V143-,Y144-,R190S,D215H,T299I,R346S,P384L,E406Q,L455F,E484K,F490S,G504S,D614G,Q675H,T761I] B.1.1.33 3 2 66.7% 0 [T478K,D614G,P681R,D950N] (consensus) B.1.1.33 3 1 33.3% 2 [T95I,T478K,D614G,P681R] B.1.351 3 1 33.3% 0 [L18F,D80A,D215G,T240-,L241-,L242-,K417N,E484K,N501Y,Y505H,D614G,A701V,R905C,T1105P] B.1.351 3 1 33.3% 16 [L5F,D80A,T95N,R102S,N211K,L212-,D215G,L242-,A243-,L244-,R346G,K417N,E484K,N501Y,D614G,P681R,A701V,N764K] B.1.351 3 1 33.3% 10 [D80A,D215G,L242-,A243-,L244-,P384L,K417N,E484K,N501Y,D614G,A701V,Q1142L] AY.19 3 2 66.7% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1153Y] (consensus) AY.19 3 1 33.3% 4 [T19R,T95I,G142D,V143-,Y144-,Y145-,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1153Y] B.1.497 3 1 33.3% 0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.497 3 1 33.3% 6 [A67V,T95I,G142D,V143-,Y144-,Y145-,N211I,L212-,L452R,T478K,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] B.1.497 3 1 33.3% 14 [A67V,H69-,V70-,T95I,G142D,E156G,F157-,R158-,G339D,S371L,S373P,S375F,L452R,T478K,D614G,H655Y,N679K,P681H,D796Y,N856K,Q954H,N969K,L981F] B.1.640.2 3 2 66.7% 0 [L5F,P9L,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,D215H,R346S,N394S,Y449N,E484K,F490S,N501Y,D614G,P681H,T859N,D1139H] (consensus) B.1.640.2 3 1 33.3% 7 [P9L,T95I,E96Q,C136-,N137-,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,R190S,I210T,R346S,N394S,Y449N,E484K,F490S,Q498R,N501Y,D614G,P681H,T859N,D936H,D1139H,L1200F] B.1.1.70 2 1 50.0% 0 [D614G] (consensus) B.1.1.70 2 1 50.0% 1 [P330S,D614G] B.1.149 2 2 100.0% 0 [D614G] (consensus) B.1.221 2 2 100.0% 0 [S98F,D614G] (consensus) B.1.240 2 1 50.0% 0 [D614G] (consensus) B.1.240 2 1 50.0% 22 [Q52H,L141-,G142-,V143-,Y144-,L176F,R214H,A222V,P230Q,L242-,A243-,L244-,N354D,L452R,E484A,N501T,N603S,D614G,N658D,Q677H,R683Q,F1103L,V1176F] B.1.609 2 1 50.0% 0 [L5F,L176F,T478R,D614G] (consensus) B.1.609 2 1 50.0% 9 [H49D,G142D,L452R,T478K,D614G,P681R,D950N,V1104L] B.1.1.318 2 2 100.0% 0 [D80Y,T95I,Y144-,A243S,E484K,D614G,P681H,D796H,T859I] (consensus) B.1.526 2 1 50.0% 0 [L5F,T95I,D253G,A262S,E484K,D614G,A701V] (consensus) B.1.526 2 1 50.0% 11 [L5F,I68N,H69-,V70-,S71-,G72-,T73-,N74-,T95I,G142-,Y144D,D253G,Y449S,E484K,D614G,A701V] B.1.177.77 2 1 50.0% 0 [Q14-,C15-,V16-,N17-,L18-,S50L,K97E,Y144-,Y145H,A222V,F490L,D614G,S704A,S735A,D737E,I1115L] (consensus) B.1.177.77 2 1 50.0% 6 [Q14-,C15-,V16-,N17-,L18-,S50L,K97E,L141-,G142-,V143-,Y144-,A222V,F490L,D614G,D737E,I1115L] P.1.15 2 1 50.0% 0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,E583Q,D614G,H655Y,T1027I,V1176F] (consensus) P.1.15 2 1 50.0% 29 [N17D,H69-,V70-,K147E,D215G,R346S,K417T,V445A,L452Q,N460K,E484A,F486L,Q498Y,N501T,Y505H,D614G,V642G,Q675R,K795R,L828F,D1153A,V1176F,K1181E,K1266N] P.1.7 2 1 50.0% 0 [L18F,T20N,P26S,W152L,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] (consensus) P.1.7 2 1 50.0% 3 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,A845S,T1027I,V1176F] B.1.258 2 2 100.0% 0 [H69-,V70-,N439K,D614G] (consensus) B.1.551 2 1 50.0% 0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,T547K,D614G,H655Y,N679K,P681H,N764K,N856K,Q954H,N969K,L981F] (consensus) B.1.551 2 1 50.0% 21 [L5F,T19R,T478K,D614G,P681R,D950N] AY.15 2 1 50.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) AY.15 2 1 50.0% 12 [T19R,T22I,A67V,H69-,V70-,G142D,E156G,F157-,R158-,G339D,S371L,S373P,S375F,L452R,T478K,D614G,P681R,N856K,D950N,Q954H,N969K,L981F] AY.63 2 2 100.0% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus) AY.50 2 2 100.0% 0 [T19R,M153I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus) B.1.2 1 1 100.0% 0 [D614G] (consensus) B.1.36.19 1 1 100.0% 0 [D614G] (consensus) B.1.1.47 1 1 100.0% 0 [D198G,Q613H,D614G] (consensus) B.1.1.228 1 1 100.0% 0 [D614G] (consensus) B.1.429 1 1 100.0% 0 [S13I,W152C,L452R,D614G] (consensus) B.1.160 1 1 100.0% 0 [S477N,D614G] (consensus) B.1.367 1 1 100.0% 0 [D80Y,D614G] (consensus) B.1.637 1 1 100.0% 0 [A67D,T95I,L452R,E484K,D614G,P681H,H1088R,D1118H] (consensus) AZ.5 1 1 100.0% 0 [D80Y,T95I,Y144-,W258L,E484K,D614G,P681H,D796H] (consensus) C.1.2 1 1 100.0% 0 [P9L,P25L,C136F,Y144-,W152R,R190S,D215G,A243-,L244-,Y449H,T478K,E484K,N501Y,D614G,H655Y,N679K,T716I,T859N,A879T] (consensus) B.1.621.1 1 1 100.0% 0 [T95I,+143T,Y144S,Y145N,R346K,E484K,N501Y,D614G,P681H,D950N] (consensus) B.1.617.1 1 1 100.0% 0 [T95I,G142D,E154K,L452R,E484Q,D614G,P681R,Q1071H] (consensus) AY.16.1 1 1 100.0% 0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S689I,A701V,D950N] (consensus) AY.55 1 1 100.0% 0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,A1087S] (consensus) AY.8 1 1 100.0% 0 [V16F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus) AY.11 1 1 100.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1167V] (consensus) AY.18 1 1 100.0% 0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1199N] (consensus) AY.17 1 1 100.0% 0 [T19R,G142D,E156G,F157-,R158-,I210-,L452R,T478K,D614G,P681R,D950N,Q1113L] (consensus)
last modified: Sun Aug 29 01:25 2021
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Questions or comments? Contact us at seq-info@lanl.gov.
Questions or comments? Contact us at seq-info@lanl.gov.
