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Most common spike forms based on Pango lineage designations


Last update: Dec 3, 2021


PANGO Lineages

Sequences: Short list of Last 60 days

As new lineages emerge, there are often many sequences with many ambiguous base calls. Our pipeline filters out such sequences, and as a consequence we undercount the number of sequences in GISAID that have been specified as members of related Pango lineages. Our strategy, however, enables us to use strictly high quality sequences to identify and track the common Spike forms in emerging lineages.

COMMON FORMS OF SPIKE WITH A GIVEN PANGO LINEAGE DESIGNATION

For each lineage, we show the most common forms of Spike, as well as their counts within (and percentages of) the lineage. [Note that if a lineage contains several divergent forms of Spike, the consensus form might not be found among these common forms.] Also shown is the Hamming distance (HD) between each form and the most common form in that lineage. Deletions relative to the ancestral reference strain are indicated with a dash (e.g. the two amino acid deletion in Delta variant are indicated as: 'E156-,F157-'), and insertions are denoted by a plus sign (e.g. B.1.621 usually has an extra T at position 143, it is written '+143T').

We show the 5 most common forms. This output is based on sequences sampled in the last 60 days from our last update, from 2021-10-04 to 2021-11-28.

Pango      Lineage   Form   Form
Lineage      Count  Count    Pct  HD [Spike form as mutation string]
AY.4        170422  93321  54.8%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.4        170422   3567   2.1%   1 [T19R,T95I,D138H,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.4        170422   3065   1.8%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.4        170422   2944   1.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1141F] 
AY.4        170422   2479   1.5%   1 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 


AY.43        44202  23523  53.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.43        44202   4373   9.9%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.43        44202    760   1.7%   1 [V6F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.43        44202    418   0.9%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S813I,D950N] 
AY.43        44202    406   0.9%   1 [T19R,A67S,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.103       41179  18840  45.8%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.103       41179   6835  16.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.103       41179    692   1.7%   1 [T19R,D80Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.103       41179    317   0.8%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.103       41179    246   0.6%   1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.25        35047  14230  40.6%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.25        35047   5578  15.9%   1 [T19R,S112L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.25        35047   2557   7.3%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.25        35047   1938   5.5%   2 [T19R,S112L,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.25        35047    326   0.9%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A846S,D950N] 

AY.4.2       33980  18936  55.7%   0 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.4.2       33980   4175  12.3%   1 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.4.2       33980    825   2.4%   2 [S13T,T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.4.2       33980    485   1.4%   1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.4.2       33980    478   1.4%   2 [T19R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,T299I,L452R,T478K,D614G,P681R,D950N,V1264L] 

B.1.617.2    30416  10640  35.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
B.1.617.2    30416   4618  15.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
B.1.617.2    30416   2426   8.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
B.1.617.2    30416    426   1.4%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D574N,D614G,P681R,D950N] 
B.1.617.2    30416    377   1.2%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1167V] 

AY.122       29471  10687  36.3%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.122       29471   2974  10.1%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.122       29471   1324   4.5%   2 [T19R,G142D,E156G,F157-,R158-,W258R,L452R,T478K,D614G,P681R,D950N,A1078S] 
AY.122       29471    955   3.2%   1 [T19R,G142D,E156G,F157-,R158-,T240I,L452R,T478K,D614G,P681R,D950N] 
AY.122       29471    873   3.0%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] 

AY.44        29228  14183  48.5%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.44        29228   4549  15.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.44        29228    314   1.1%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] 
AY.44        29228    250   0.9%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.44        29228    180   0.6%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.3         19650   8003  40.7%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.3         19650   3000  15.3%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.3         19650    662   3.4%   1 [T19R,V70I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.3         19650    389   2.0%   2 [T19R,V70I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.3         19650    274   1.4%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T1117I] 

AY.98         9677   5192  53.7%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.98         9677    490   5.1%   2 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N,D1127G] 
AY.98         9677    417   4.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219V] 
AY.98         9677    354   3.7%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1176F] 
AY.98         9677    318   3.3%   1 [T19R,E96V,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.39         8957   3073  34.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.39         8957   1228  13.7%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.39         8957    719   8.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.39         8957    233   2.6%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] 
AY.39         8957    147   1.6%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.5          8206   5187  63.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.5          8206    359   4.4%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.5          8206    237   2.9%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5          8206    163   2.0%   1 [T19R,G142D,E156G,F157-,R158-,T376I,L452R,T478K,D614G,P681R,D950N] 
AY.5          8206    128   1.6%   1 [T19R,G142D,E156G,F157-,R158-,T323I,L452R,T478K,D614G,P681R,D950N] 

AY.119        6680   1610  24.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.119        6680    941  14.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] 
AY.119        6680    846  12.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N] 
AY.119        6680    443   6.6%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.119        6680    360   5.4%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] 

AY.120        6132   2835  46.2%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.120        6132    984  16.0%   1 [T19R,T51I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.120        6132    170   2.8%   1 [T19R,T95I,G142D,E156G,F157-,R158-,V407I,L452R,T478K,D614G,P681R,D950N] 
AY.120        6132    155   2.5%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.120        6132    141   2.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N] 

AY.4.2.1      5357   4209  78.6%   0 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.4.2.1      5357     94   1.8%   1 [T19R,V36F,G75R,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.4.2.1      5357     93   1.7%   1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A899S,D950N] 
AY.4.2.1      5357     92   1.7%   2 [T19R,V36F,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.4.2.1      5357     77   1.4%   1 [T19R,V36F,T95I,G142D,Y145H,E156G,F157-,R158-,A222V,L452R,T478K,D614G,A672V,P681R,D950N] 

AY.100        5034   1884  37.4%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.100        5034   1124  22.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.100        5034    134   2.7%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.100        5034     56   1.1%   2 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.100        5034     51   1.0%   1 [T19R,P82T,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.46.6       3947   1649  41.8%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.46.6       3947    907  23.0%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.6       3947    233   5.9%   1 [T19R,H69Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.6       3947     76   1.9%   1 [T19R,G142D,E156G,F157-,R158-,T323K,L452R,T478K,D614G,P681R,D950N] 
AY.46.6       3947     46   1.2%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.122.1      3797   2526  66.5%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.122.1      3797    178   4.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,E180Q,L452R,T478K,D614G,P681R,D950N] 
AY.122.1      3797    112   2.9%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T791I,D950N] 
AY.122.1      3797     44   1.2%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L242F,L452R,T478K,D614G,P681R,D950N,C1236S] 
AY.122.1      3797     44   1.2%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,A623V,P681R,D950N,A1070V] 

AY.6          3731   1621  43.4%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.6          3731    424  11.4%   2 [T19R,T22I,A67V,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.6          3731    133   3.6%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1078S] 
AY.6          3731     90   2.4%   1 [T19R,G142D,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] 
AY.6          3731     85   2.3%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1207D,V1264L] 

AY.26         3657   1054  28.8%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus)
AY.26         3657    581  15.9%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] 
AY.26         3657    361   9.9%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.26         3657    199   5.4%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] 
AY.26         3657     71   1.9%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,T547I,D614G,P681R,D950N,V1264L] 

AY.98.1       3528   1807  51.2%   0 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.98.1       3528    532  15.1%   1 [T19R,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N] 
AY.98.1       3528     73   2.1%   1 [T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,A942S,D950N] 
AY.98.1       3528     56   1.6%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.98.1       3528     50   1.4%   1 [L18F,T19R,G142D,E156G,F157-,R158-,P251L,L452R,T478K,D614G,P681R,D950N] 

AY.20         3400    939  27.6%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus)
AY.20         3400    587  17.3%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.20         3400    229   6.7%   1 [T19R,T95I,K97E,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.20         3400    159   4.7%   2 [T19R,T95I,K97E,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.20         3400     90   2.6%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,V1104L] 

AY.47         3344   1749  52.3%   0 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.47         3344    625  18.7%   1 [T19R,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N] 
AY.47         3344     48   1.4%   1 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N,M1229I] 
AY.47         3344     33   1.0%   1 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,F490L,D614G,P681R,D950N] 
AY.47         3344     32   1.0%   2 [T19R,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R] 

AY.39.1       3162   1427  45.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.39.1       3162    520  16.4%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.39.1       3162    123   3.9%   1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.39.1       3162     98   3.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,G219D,L452R,T478K,D614G,P681R,D950N] 
AY.39.1       3162     97   3.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484A,D614G,P681R,D950N] 

AY.9.2        3110   1355  43.6%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.9.2        3110    273   8.8%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.9.2        3110    170   5.5%   1 [T19R,G142D,E156G,F157-,R158-,D215H,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.9.2        3110    113   3.6%   4 [T19R,A67V,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,Q1208H,M1237I] 
AY.9.2        3110    101   3.2%   1 [T19R,A67V,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

AY.27         3087   1843  59.7%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] (consensus)
AY.27         3087    564  18.3%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.27         3087     86   2.8%   1 [T19R,G142D,E156G,F157-,R158-,L179F,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.27         3087     32   1.0%   1 [L8F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.27         3087     30   1.0%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,Q675H,P681R,D950N] 

AY.33         3079    588  19.1%   0 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,L452R,T478K,Q613H,D614G,P681R,D950N] (consensus)
AY.33         3079    520  16.9%   1 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,L452R,T478K,D614G,P681R,D950N] 
AY.33         3079    245   8.0%   1 [T19R,T29A,G142D,E156G,F157-,R158-,T250I,T299I,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.33         3079    127   4.1%   2 [T19R,T29A,E156G,F157-,R158-,T250I,L452R,T478K,D614G,P681R,D950N] 
AY.33         3079     92   3.0%   3 [T19R,T29A,E156G,F157-,R158-,T250I,G446V,L452R,T478K,D614G,P681R,D950N] 

AY.102        2952   1691  57.3%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.102        2952     55   1.9%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1202Q] 
AY.102        2952     35   1.2%   1 [T19R,H69Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.102        2952     30   1.0%   3 [T19R,T95I,L452R,T478K,D614G,P681R,D950N] 
AY.102        2952     30   1.0%   4 [T19R,D80Y,T95I,E156G,F157-,R158-,T323I,L452R,T478K,D614G,P681R,D950N,A1020S,T1027I] 

AY.46         2856   1010  35.4%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46         2856    579  20.3%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.46         2856    109   3.8%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.46         2856     78   2.7%   4 [T19R,T95I,E156G,F157-,R158-,E281Q,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.46         2856     59   2.1%   1 [T19R,E132A,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.34         2753    771  28.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] (consensus)
AY.34         2753    423  15.4%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] 
AY.34         2753    167   6.1%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.34         2753    153   5.6%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,T859I,D950N] 
AY.34         2753    123   4.5%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] 

AY.117        2433   1243  51.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.117        2433    400  16.4%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.117        2433     56   2.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,P251S,L452R,T478K,D614G,P681R,D950N] 
AY.117        2433     52   2.1%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,T604I,D614G,P681R,D950N] 
AY.117        2433     48   2.0%   1 [T19R,T95I,G142D,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.111        2322   1505  64.8%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.111        2322     85   3.7%   3 [T19R,T95I,G142D,E156G,F157-,R158-,N211-,L212I,L452R,T478K,D614G,P681R,D950N,V1094I] 
AY.111        2322     59   2.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] 
AY.111        2322     48   2.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] 
AY.111        2322     46   2.0%   3 [T19R,T95I,G142D,E156G,F157-,R158-,N211-,L212I,L452R,T478K,A522S,D614G,P681R,D950N] 

AY.42         2305    440  19.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.42         2305    202   8.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.42         2305    174   7.5%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.42         2305    154   6.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T719I,D950N] 
AY.42         2305     85   3.7%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T719I,D950N] 

AY.36         2293   1410  61.5%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus)
AY.36         2293    183   8.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N,V1104L] 
AY.36         2293    118   5.1%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.36         2293     36   1.6%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,S640F,P681R,D950N,V1104L] 
AY.36         2293     33   1.4%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N,V1104L] 

AY.118        2202   1053  47.8%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.118        2202    411  18.7%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.118        2202     83   3.8%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.118        2202     41   1.9%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.118        2202     19   0.9%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.9.1        1967    637  32.4%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.9.1        1967    307  15.6%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.9.1        1967    143   7.3%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,Q675K,P681R,D950N] 
AY.9.1        1967    107   5.4%   2 [T19R,G142D,E156G,F157-,R158-,A222V,T250I,S255F,L452R,T478K,D614G,P681R,D950N] 
AY.9.1        1967    105   5.3%   3 [V11I,T19R,A67S,G142D,E156G,F157-,R158-,A222V,S255F,L452R,T478K,D614G,P681R,D950N] 

AY.121        1967    678  34.5%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.121        1967    366  18.6%   2 [T19R,T29I,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.121        1967     55   2.8%   1 [T19R,T95I,E156G,F157-,R158-,E180Q,L452R,T478K,D614G,P681R,D950N] 
AY.121        1967     48   2.4%   1 [T19R,T29I,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.121        1967     41   2.1%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.3.1        1871    931  49.8%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.3.1        1871    324  17.3%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.3.1        1871     25   1.3%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,M1233I] 
AY.3.1        1871     20   1.1%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.3.1        1871     18   1.0%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A846V,D950N] 

AY.4.5        1804   1035  57.4%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] (consensus)
AY.4.5        1804     91   5.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,G769V,D950N,D1259Y] 
AY.4.5        1804     79   4.4%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] 
AY.4.5        1804     68   3.8%   2 [L18F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,Q613H,D614G,P681R,D950N,D1259Y] 
AY.4.5        1804     49   2.7%   1 [T19R,S60C,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1259Y] 

AY.113        1773    860  48.5%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.113        1773    280  15.8%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.113        1773     26   1.5%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.113        1773     17   1.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D796Y,D950N] 
AY.113        1773     16   0.9%   1 [T19R,T95I,D138Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.99.2       1443    586  40.6%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.99.2       1443    248  17.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.99.2       1443    120   8.3%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.99.2       1443     12   0.8%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.99.2       1443     11   0.8%   1 [L5F,T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.69         1440    787  54.7%   0 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.69         1440    153  10.6%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R] 
AY.69         1440     89   6.2%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.69         1440     23   1.6%   1 [T19R,E156G,F157-,R158-,A222V,L452R,P463S,T478K,D614G,P681R,D950N] 
AY.69         1440     16   1.1%   3 [T19R,A222V,L452R,T478K,D614G,P681R,D950N] 

AY.23         1261    681  54.0%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus)
AY.23         1261     57   4.5%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A845S,D950N,V1264L] 
AY.23         1261     56   4.4%   3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D586N,Q607K,D614G,P681R,D950N,E1262V,V1264L] 
AY.23         1261     52   4.1%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.23         1261     18   1.4%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D586N,D614G,P681R,D950N,E1262V,V1264L] 

AY.75         1152    490  42.5%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.75         1152    194  16.8%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.75         1152     40   3.5%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,T573I,D614G,T638I,P681R,D950N] 
AY.75         1152     18   1.6%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.75         1152     13   1.1%   1 [L18F,T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

AY.85         1039    315  30.3%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.85         1039    272  26.2%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.85         1039     88   8.5%   1 [T19R,T95I,E156G,F157-,R158-,F306L,L452R,T478K,D614G,P681R,D950N] 
AY.85         1039     23   2.2%   4 [Q14H,T19R,K77T,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1207D] 
AY.85         1039     14   1.3%   3 [Q14H,T19R,K77T,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1207D] 

AY.114         940    349  37.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.114         940    119  12.7%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.114         940    103  11.0%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.114         940     54   5.7%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.114         940     22   2.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,S640F,P681R,D950N] 

AY.108         888    202  22.7%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.108         888    180  20.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.108         888     57   6.4%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,I850L,D950N] 
AY.108         888     48   5.4%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N] 
AY.108         888     41   4.6%   2 [T19R,T95I,G142D,E156G,F157-,R158-,Y248H,L452R,T478K,D614G,P681R,D950N] 

AY.23.1        883    631  71.5%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1234I,V1264L] (consensus)
AY.23.1        883    109  12.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.23.1        883     45   5.1%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1230L,L1234I,V1264L] 
AY.23.1        883     13   1.5%   3 [T19R,G142D,L452R,T478K,D614G,P681R,D950N,L1234I,V1264L] 
AY.23.1        883      7   0.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A903S,D950N,L1234I,V1264L] 

AY.93          838    387  46.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.93          838     89  10.6%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.93          838     58   6.9%   1 [T19R,G142D,E156G,F157-,R158-,W258L,L452R,T478K,D614G,P681R,D950N] 
AY.93          838     49   5.8%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T859N,D950N] 
AY.93          838     29   3.5%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] 

AY.39.1.1      825    779  94.4%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.39.1.1      825      8   1.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809L,D950N] 
AY.39.1.1      825      6   0.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,R765H,D950N] 
AY.39.1.1      825      5   0.6%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I692F,D950N] 
AY.39.1.1      825      2   0.2%   1 [T19R,T95I,G142D,E156G,F157-,R158-,V382A,L452R,T478K,D614G,P681R,D950N] 

AY.46.4        721    364  50.5%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,E661D,P681R,D950N] (consensus)
AY.46.4        721    140  19.4%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,E661D,P681R,D950N] 
AY.46.4        721     45   6.2%   1 [T19R,G142D,E156G,F157-,R158-,A222S,L452R,T478K,D614G,E661D,P681R,D950N] 
AY.46.4        721     19   2.6%   2 [T19R,E156G,F157-,R158-,A222S,L452R,T478K,D614G,E661D,P681R,D950N] 
AY.46.4        721      8   1.1%   2 [T19R,P26L,E156G,F157-,R158-,L452R,T478K,D614G,E661D,P681R,D950N] 

AY.54          709    342  48.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.54          709     92  13.0%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.54          709     34   4.8%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.54          709     16   2.3%   1 [T19R,G142D,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] 
AY.54          709     14   2.0%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 

AY.116         679    134  19.7%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.116         679     99  14.6%   2 [T19R,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N] 
AY.116         679     74  10.9%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162L] 
AY.116         679     50   7.4%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.116         679     27   4.0%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.109         623    351  56.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.109         623     84  13.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1058Y] 
AY.109         623     44   7.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,E484K,D614G,P681R,D950N] 
AY.109         623     13   2.1%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.109         623      8   1.3%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.9           580    249  42.9%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.9           580     60  10.3%   1 [T19R,G142D,E156G,F157-,R158-,L189F,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.9           580     53   9.1%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.9           580     42   7.2%   2 [T19R,G142D,E156G,F157-,R158-,D215H,A222V,L452R,T478K,D614G,P681R,D950N,I1169V] 
AY.9           580     10   1.7%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,Q675H,P681R,D950N] 

AY.30          551    249  45.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.30          551    117  21.2%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.30          551     19   3.4%   4 [T19R,L452R,T478K,D614G,P681R,D950N] 
AY.30          551     14   2.5%   1 [T19R,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] 
AY.30          551     12   2.2%   1 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,T478K,D614G,P681R,D950N] 

AY.80          547    218  39.9%   0 [T19R,T20I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.80          547    204  37.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.80          547     44   8.0%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1020S] 
AY.80          547     16   2.9%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A701S,D950N] 
AY.80          547      9   1.6%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.14          540    312  57.8%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.14          540     65  12.0%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.14          540     13   2.4%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.14          540     12   2.2%   2 [T19R,G142D,Y144-,E156G,F157-,R158-,A348S,L452R,T478K,D614G,P681R,D950N] 
AY.14          540     11   2.0%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] 

AY.66          521    426  81.8%   0 [T19R,G142D,E156G,F157-,R158-,A222V,A260T,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.66          521     15   2.9%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.66          521      9   1.7%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.66          521      7   1.3%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.66          521      5   1.0%   5 [T19R,T95I,S98F,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 

AY.92          506    290  57.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.92          506     34   6.7%   1 [T19R,T95I,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N] 
AY.92          506     30   5.9%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.92          506     15   3.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,D178N,L452R,T478K,D614G,P681R,D950N,P1162S] 
AY.92          506     12   2.4%   1 [T19R,T95I,G142D,E156G,F157-,R158-,D178N,L452R,T478K,S494L,D614G,P681R,D950N] 

AY.7.1         501    159  31.7%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.7.1         501    147  29.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.7.1         501     61  12.2%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A688V,D950N] 
AY.7.1         501     32   6.4%   1 [T19R,E156G,F157-,R158-,L452R,T478K,E484A,D614G,P681R,D950N] 
AY.7.1         501      9   1.8%   2 [T19R,E156G,F157-,R158-,A263V,L452R,T478K,D614G,P681R,D950N,V1033A] 

AY.5.4         478    202  42.3%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.5.4         478     82  17.2%   1 [T19R,D80Y,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5.4         478     58  12.1%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5.4         478     27   5.6%   2 [T19R,D80Y,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5.4         478      8   1.7%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T739I,D950N] 

AY.120.1       476    244  51.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.120.1       476     68  14.3%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.120.1       476      9   1.9%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1162L] 
AY.120.1       476      9   1.9%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,N679T,S680-,P681R,D950N] 
AY.120.1       476      7   1.5%   5 [T19R,L452R,T478K,D614G,P681R,D950N] 

AY.90          412    232  56.3%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.90          412     53  12.9%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.90          412     42  10.2%   1 [T19R,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D614G,P681R,D950N] 
AY.90          412     16   3.9%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.90          412     11   2.7%   2 [T19R,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D574Y,D614G,P681R,D950N] 

AY.41          401    100  24.9%   0 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,P681R,D950N,G1167V] (consensus)
AY.41          401     90  22.4%   1 [T19R,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,P681R,D950N,G1167V] 
AY.41          401     30   7.5%   4 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.41          401     19   4.7%   3 [T19R,E156G,F157-,R158-,A262S,L452R,S477I,T478K,Q613H,D614G,P681R,D950N,G1167V,K1191N] 
AY.41          401     13   3.2%   1 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,S477I,T478K,D614G,T678I,P681R,D950N,G1167V] 

AY.116.1       395    161  40.8%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.116.1       395     37   9.4%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.116.1       395     25   6.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,F306L,L452R,T478K,D614G,P681R,D950N] 
AY.116.1       395     20   5.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,A1026S] 
AY.116.1       395     14   3.5%   1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.107         385    186  48.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] (consensus)
AY.107         385     64  16.6%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] 
AY.107         385     19   4.9%   1 [T19R,T95I,G142D,V143F,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] 
AY.107         385     12   3.1%   5 [T19R,L452R,T478K,D614G,P681R,D950N,H1101Y] 
AY.107         385     10   2.6%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] 

AY.45          377    130  34.5%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.45          377     35   9.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.45          377     31   8.2%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.45          377     21   5.6%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.45          377     17   4.5%   3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T747I,D936N,D950N] 

AY.46.5        346    275  79.5%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.46.5        346     34   9.8%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.5        346     10   2.9%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,A623S,P681R,D950N] 
AY.46.5        346      8   2.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] 
AY.46.5        346      2   0.6%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,I1132V] 

AY.7           341    259  76.0%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.7           341     26   7.6%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T747I,D950N] 
AY.7           341     14   4.1%   1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.7           341      6   1.8%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.7           341      6   1.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T1076I] 

AY.101         338     86  25.4%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.101         338     73  21.6%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.101         338     39  11.5%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.101         338     26   7.7%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.101         338      8   2.4%   2 [T19R,T95I,G142D,E156G,F157-,R158-,V308L,L452R,T478K,D614G,P681R,D950N] 

AY.84          333    103  30.9%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.84          333     77  23.1%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.84          333     21   6.3%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.84          333     13   3.9%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.84          333     13   3.9%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T747I,I850L,D950N] 

AY.4.4         329    171  52.0%   0 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] (consensus)
AY.4.4         329     23   7.0%   1 [L5F,T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] 
AY.4.4         329     23   7.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] 
AY.4.4         329     13   4.0%   2 [L5F,T19R,T95I,I101T,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S929T,D950N] 
AY.4.4         329      9   2.7%   3 [L5F,T19R,D80Y,T95I,E156G,F157-,R158-,L452R,S477I,T478K,D614G,P681R,S929T,D950N] 

AY.39.2        328    237  72.3%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] (consensus)
AY.39.2        328     44  13.4%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] 
AY.39.2        328      7   2.1%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,V635A,P681R,D950N,K1073N] 
AY.39.2        328      5   1.5%   1 [L5F,T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] 
AY.39.2        328      3   0.9%   3 [T19R,G75V,T76I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1073N] 

AY.106         313     67  21.4%   0 [T19R,T95I,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.106         313     39  12.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N] 
AY.106         313     36  11.5%   3 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.106         313     21   6.7%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.106         313     14   4.5%   1 [T19R,T95I,E156G,F157-,R158-,S255F,L452R,T478K,D614G,P681R,D950N,A1087S] 

AY.72          305    157  51.5%   0 [T19R,G142D,E156G,F157-,R158-,F201L,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.72          305     94  30.8%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.72          305      7   2.3%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.72          305      5   1.6%   3 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1122L] 
AY.72          305      4   1.3%   1 [T19R,G142D,E156G,F157-,R158-,F201L,A222V,T323A,L452R,T478K,D614G,P681R,D950N] 

AY.5.3         304    151  49.7%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.5.3         304     41  13.5%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5.3         304     19   6.2%   1 [T19R,G142D,E156G,F157-,R158-,A263V,L452R,T478K,D614G,P681R,D950N] 
AY.5.3         304      9   3.0%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] 
AY.5.3         304      7   2.3%   1 [T19R,P25T,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.65          303    133  43.9%   0 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] (consensus)
AY.65          303     23   7.6%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.65          303     21   6.9%   4 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A701S,D950N,K1191N] 
AY.65          303     18   5.9%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R] 
AY.65          303     12   4.0%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,E583D,D614G,P681R,D950N,V1264L] 

AY.62          294    149  50.7%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.62          294     25   8.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1207D] 
AY.62          294     18   6.1%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.62          294     16   5.4%   4 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N978S] 
AY.62          294     13   4.4%   1 [T19R,A27S,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.74          284    180  63.4%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.74          284     12   4.2%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,H655Y,P681R,D950N] 
AY.74          284     12   4.2%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,E1188D] 
AY.74          284      9   3.2%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.74          284      7   2.5%   1 [T19R,G142D,E156G,F157-,R158-,A222V,P337L,L452R,T478K,D614G,P681R,D950N] 

AY.110         280    135  48.2%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.110         280     29  10.4%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.110         280     21   7.5%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.110         280      7   2.5%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.110         280      4   1.4%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T1009I] 

AY.79          279    106  38.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.79          279     76  27.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.79          279     39  14.0%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.79          279      6   2.2%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,H655Y,P681R,D950N] 
AY.79          279      5   1.8%   3 [T19R,E156G,F157-,R158-,R214L,L452R,T478K,D614G,P681R,D950N] 

AY.46.1        278    163  58.6%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.46.1        278     23   8.3%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.1        278     13   4.7%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1127Y] 
AY.46.1        278      8   2.9%   1 [T19R,P85L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.1        278      7   2.5%   2 [Q14H,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.46.2        263     61  23.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.46.2        263     41  15.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.2        263     22   8.4%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] 
AY.46.2        263     14   5.3%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N] 
AY.46.2        263     12   4.6%   2 [T19R,S98P,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.4.3         261     59  22.6%   0 [T19R,P26S,L54F,T95I,G142D,E156G,F157-,R158-,A262S,L452R,T478K,D614G,P681R,D950N,A1078S] 
AY.4.3         261     54  20.7%   2 [T19R,P26S,L54F,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.4.3         261     34  13.0%   4 [T19R,P26S,L54F,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,H1101Y] 
AY.4.3         261     30  11.5%   3 [T19R,P26S,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.4.3         261     16   6.1%   3 [T19R,P26S,L54F,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.13          243     88  36.2%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.13          243     38  15.6%   1 [T19R,G142D,E156G,F157-,R158-,I210-,L452R,T478K,D614G,P681R,D950N] 
AY.13          243     28  11.5%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.13          243     13   5.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.13          243      7   2.9%   2 [T19R,E156G,F157-,R158-,I210-,L452R,T478K,D614G,P681R,D950N] 

AY.105         231     58  25.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.105         231     52  22.5%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.105         231     27  11.7%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.105         231     17   7.4%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] 
AY.105         231      6   2.6%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.73          229    110  48.0%   0 [T19R,G142D,W152L,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.73          229     33  14.4%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.73          229     20   8.7%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.73          229     19   8.3%   2 [T19R,G142D,E156G,F157-,R158-,I210V,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.73          229      7   3.1%   2 [T19R,D88N,G142D,W152L,E156G,F157-,R158-,A222V,L452R,T478K,P681R,D950N] 

AY.34.1        223    126  56.5%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] (consensus)
AY.34.1        223     18   8.1%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R] 
AY.34.1        223     15   6.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N,L1265F] 
AY.34.1        223     13   5.8%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,L1265F] 
AY.34.1        223      2   0.9%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q677H,P681R,D950N] 

AY.37          222     35  15.8%   0 [T19R,G142D,E156G,F157-,R158-,A222V,V367L,L452R,T478K,D614G,P681R,D950N] 
AY.37          222     33  14.9%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.37          222     27  12.2%   1 [T19R,E156G,F157-,R158-,A222V,V367L,L452R,T478K,D614G,P681R,D950N] 
AY.37          222     18   8.1%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.37          222     11   5.0%   5 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 

AY.59          208     60  28.8%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.59          208     55  26.4%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.59          208     20   9.6%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.59          208      5   2.4%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.59          208      4   1.9%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,T678P,P681R,D950N] 

AY.86          204    129  63.2%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.86          204     12   5.9%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.86          204     11   5.4%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A845S,D950N] 
AY.86          204      8   3.9%   1 [T19R,T95I,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] 
AY.86          204      6   2.9%   2 [T19R,R21I,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.51          184     98  53.3%   0 [T19R,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N] (consensus)
AY.51          184     42  22.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R,D950N] 
AY.51          184      7   3.8%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.51          184      6   3.3%   1 [T19R,E156G,F157-,R158-,L452R,T478K,A520S,D614G,P681R] 
AY.51          184      3   1.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,A520S,E583D,D614G,P681R,D950N] 

AY.70          177     61  34.5%   0 [T19R,R21T,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.70          177     54  30.5%   1 [T19R,R21T,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.70          177     10   5.6%   3 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] 
AY.70          177      8   4.5%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.70          177      7   4.0%   3 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,T547I,D614G,P681R,D950N,P1069S] 

AY.46.3        172     66  38.4%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.3        172     50  29.1%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.46.3        172      9   5.2%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.46.3        172      6   3.5%   2 [T19R,W64C,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.46.3        172      4   2.3%   3 [T19R,T51I,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.58          171     64  37.4%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.58          171     50  29.2%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.58          171     12   7.0%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.58          171      6   3.5%   3 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,P479S,D614G,P681R,D950N] 
AY.58          171      4   2.3%   3 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,T547I,D614G,P681R,D950N] 

AY.1           167     90  53.9%   0 [T19R,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.1           167     20  12.0%   1 [T19R,T95I,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] 
AY.1           167     10   6.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N,M1237I] 
AY.1           167      5   3.0%   1 [T19R,L54F,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] 
AY.1           167      5   3.0%   5 [T19R,W258L,K417N,L452R,T478K,D614G,P681R,D950N] 

AY.43.1        167    103  61.7%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.43.1        167     31  18.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.43.1        167      8   4.8%   1 [T19R,S98F,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.43.1        167      7   4.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.43.1        167      4   2.4%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.91          164     38  23.2%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.91          164     34  20.7%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.91          164     20  12.2%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.91          164     12   7.3%   1 [T19R,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] 
AY.91          164      5   3.0%   3 [T19R,G142D,E156G,F157-,R158-,Y200H,L452R,T478K,D614G,P681R,D950N,D1259H] 

AY.120.2.1     155    114  73.5%   0 [T19R,H66Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.120.2.1     155     33  21.3%   1 [T19R,H66Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.120.2.1     155      1   0.6%   1 [T19R,H66Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1124V] 
AY.120.2.1     155      1   0.6%   2 [L5F,T19R,H66Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.120.2.1     155      1   0.6%   1 [T19R,H66Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,R847K,D950N] 

AY.43.2        153    101  66.0%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.43.2        153     19  12.4%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.43.2        153     10   6.5%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.43.2        153      3   2.0%   1 [L8-,T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.43.2        153      2   1.3%   1 [T19R,E156G,F157-,R158-,L452R,E471Q,T478K,D614G,P681R,D950N] 

AY.32          151     34  22.5%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] (consensus)
AY.32          151     30  19.9%   2 [T19R,Y28F,G142D,E156G,F157-,R158-,L216F,L452R,T478K,T572I,D614G,P681R,D950N] 
AY.32          151     20  13.2%   1 [T19R,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] 
AY.32          151     13   8.6%   3 [T19R,Y28F,T95I,G142D,E156G,F157-,R158-,L216F,L452R,T478K,T572I,D614G,P681R,D950N] 
AY.32          151      6   4.0%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.28          151    107  70.9%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A701S,D950N,A1078S] (consensus)
AY.28          151      4   2.6%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T470I,T478K,D614G,P681R,A701S,D950N,A1078S] 
AY.28          151      3   2.0%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A701S,D950N,A1078S,I1221L] 
AY.28          151      2   1.3%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T470I,T478K,D614G,V622F,P681R,A701S,D950N,A1078S] 
AY.28          151      2   1.3%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,N540K,D614G,P681R,A701S,D950N,A1078S] 

AY.64          141     72  51.1%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] (consensus)
AY.64          141     27  19.1%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] 
AY.64          141      6   4.3%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] 
AY.64          141      5   3.5%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,K1191N] 
AY.64          141      4   2.8%   2 [L5F,T19R,G142D,H146L,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,K1191N] 

AY.88          141     49  34.8%   0 [T19R,T124S,G142D,E156G,F157-,R158-,L452R,T478K,D614G,S680F,P681R,D950N] 
AY.88          141     13   9.2%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.88          141     13   9.2%   1 [T19R,T20I,T124S,G142D,E156G,F157-,R158-,L452R,T478K,D614G,S680F,P681R,D950N] 
AY.88          141     12   8.5%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,S680F,P681R,D950N] (consensus)
AY.88          141      8   5.7%   2 [T19R,G142D,E156G,F157-,R158-,Q414R,L452R,T478K,D614G,S680F,P681R,D950N] 

AY.61          137     32  23.4%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.61          137     25  18.2%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.61          137     18  13.1%   1 [T19R,P85S,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.61          137     13   9.5%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.61          137      8   5.8%   2 [T19R,P85S,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

AY.83          133     64  48.1%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.83          133     56  42.1%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.83          133      5   3.8%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.83          133      3   2.3%   2 [T19R,E156G,F157-,R158-,G252V,L452R,T478K,D614G,P681R,D950N] 
AY.83          133      1   0.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A845V,D950N] 

AY.7.2         131     51  38.9%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.7.2         131     35  26.7%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.7.2         131      6   4.6%   1 [T19R,G142D,E156G,F157-,R158-,P174S,L452R,T478K,D614G,P681R,D950N] 
AY.7.2         131      5   3.8%   1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.7.2         131      5   3.8%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219C,M1237I] 

AY.63          123     62  50.4%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,K814R,D950N] (consensus)
AY.63          123     42  34.1%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.63          123      4   3.3%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,S704L,D950N] 
AY.63          123      4   3.3%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,C1243F] 
AY.63          123      4   3.3%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,A1078S] 

AY.35          123     39  31.7%   0 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D808E,D950N] 
AY.35          123     36  29.3%   1 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N] (consensus)
AY.35          123     16  13.0%   3 [T19R,K77T,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.35          123      5   4.1%   1 [T19R,K77T,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D808E,D950N] 
AY.35          123      4   3.3%   2 [T19R,K77T,E156G,F157-,R158-,L452R,T478K,E484Q,D614G,P681R,D950N] 

AY.104         117     74  63.2%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] (consensus)
AY.104         117      6   5.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.104         117      2   1.7%   1 [S12F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,T572I,D614G,P681R,D950N] 
AY.104         117      2   1.7%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.104         117      2   1.7%   3 [T19R,H69Y,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.57          116     76  65.5%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.57          116     12  10.3%   3 [T19R,L54F,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.57          116      9   7.8%   4 [T19R,L54F,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.57          116      6   5.2%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.57          116      3   2.6%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

B.1.1.7        115     50  43.5%   0 [H69-,V70-,Y144-,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] (consensus)
B.1.1.7        115     10   8.7%   1 [H69-,V70-,Y144-,E484K,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] 
B.1.1.7        115      9   7.8%   2 [H69-,V70-,Y144-,V213L,E484K,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] 
B.1.1.7        115      4   3.5%   3 [H69-,V70-,Y144-,E484K,N501Y,A570D,D614G,Q677H,P681H,A688S,T716I,S982A,D1118H] 
B.1.1.7        115      3   2.6%   2 [H69-,V70-,Y144-,S155G,V367F,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] 

AY.94          106     28  26.4%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.94          106     21  19.8%   2 [T19R,G142D,E156G,F157-,R158-,D215Y,L452R,T478K,D614G,P681R,D950N] 
AY.94          106     16  15.1%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.94          106     11  10.4%   3 [T19R,G142D,E156G,F157-,R158-,D215Y,L452R,T478K,D614G,P681R,S689I,D950N] 
AY.94          106      7   6.6%   2 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

AY.67           94     21  22.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.67           94     13  13.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.67           94      8   8.5%   3 [T19R,G142D,E156G,F157-,R158-,A222V,A262S,L452R,T478K,D614G,P681R,D950N] 
AY.67           94      7   7.4%   4 [T19R,G142D,E156G,F157-,R158-,A222V,A262S,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.67           94      5   5.3%   5 [T19R,G142D,E156G,F157-,R158-,A222V,A262S,L452R,T478K,Q613H,D614G,P681R,D950N,L1265F] 

AY.99.1         92     31  33.7%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.99.1         92     30  32.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.99.1         92      3   3.3%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,Q1208H] 
AY.99.1         92      3   3.3%   2 [T19R,E156G,F157-,R158-,L452R,S459F,T478K,D614G,P681R,D950N] 
AY.99.1         92      3   3.3%   2 [T19R,Q23H,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S704L,D950N] 

AY.78           86     28  32.6%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.78           86      9  10.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.78           86      6   7.0%   1 [L5F,T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.78           86      5   5.8%   3 [T19R,D80N,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N,M1229I] 
AY.78           86      4   4.7%   2 [T19R,P25T,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1176F] 

AY.96           85     38  44.7%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.96           85      7   8.2%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.96           85      7   8.2%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.96           85      6   7.1%   4 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A846V,A1078S] 
AY.96           85      5   5.9%   3 [T19R,P26H,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.112          85     36  42.4%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.112          85      6   7.1%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D936G,D950N] 
AY.112          85      5   5.9%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1207D] 
AY.112          85      4   4.7%   1 [T19R,T95I,E156G,F157-,R158-,S254F,L452R,T478K,D614G,P681R,D950N] 
AY.112          85      3   3.5%   1 [T19R,T76A,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.5.2          85     66  77.6%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.5.2          85      9  10.6%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5.2          85      7   8.2%   1 [T19R,G142D,S155I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.5.2          85      1   1.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S875F,D950N] 
AY.5.2          85      1   1.2%   1 [L5F,T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.87           78     59  75.6%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.87           78      5   6.4%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.87           78      5   6.4%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,N679T,S680-,P681R,D950N] 
AY.87           78      2   2.6%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.87           78      1   1.3%   3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,T678I,P681R,L822F,D950N] 

AY.68           75     29  38.7%   0 [T19R,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,D950N,D979E] 
AY.68           75     20  26.7%   1 [T19R,G142D,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,D950N,D979E] (consensus)
AY.68           75      5   6.7%   2 [T19R,G142D,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,P681R,P809S,D950N,D979E] 
AY.68           75      5   6.7%   1 [T19R,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,R646L,P681R,D950N,D979E] 
AY.68           75      3   4.0%   2 [T19R,G142D,E156G,F157-,R158-,A222V,D253A,L452R,T478K,D614G,R646L,P681R,D950N,D979E] 

B.1.621         71     21  29.6%   0 [T95I,+143T,Y144S,Y145N,R346K,E484K,N501Y,D614G,P681H,D950N] (consensus)
B.1.621         71      7   9.9%   5 [T95I,Y144N,Y145-,R346K,Y449N,E484K,N501Y,E583D,D614G,P681H,D950N] 
B.1.621         71      5   7.0%   2 [T95I,+143T,Y144S,Y145N,R346K,Y449N,E484K,N501Y,E583D,D614G,P681H,D950N] 
B.1.621         71      4   5.6%   1 [T95I,+143T,Y144S,Y145N,R346K,K417N,E484K,N501Y,D614G,P681H,D950N] 
B.1.621         71      4   5.6%   1 [T95I,+143T,Y144S,Y145N,R346K,E484K,N501Y,D614G,P681H,S939F,D950N] 

AY.77           70     23  32.9%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.77           70     13  18.6%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.77           70      7  10.0%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.77           70      5   7.1%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.77           70      4   5.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q628H,P681R,D950N] 

AY.75.1         66     16  24.2%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.75.1         66      9  13.6%   1 [T19R,G142D,N148T,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.75.1         66      9  13.6%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.75.1         66      4   6.1%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,P812S,D950N] 
AY.75.1         66      3   4.5%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,Q613H,D614G,P681R,D950N] 

AY.4.1          65     52  80.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.4.1          65      5   7.7%   1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N,V1122L] 
AY.4.1          65      2   3.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,Q836L,D950N] 
AY.4.1          65      1   1.5%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,E484A,D614G,P681R,D950N] 
AY.4.1          65      1   1.5%   2 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N,V1122L] 

AY.56           64     16  25.0%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,S680F,P681R,D950N] 
AY.56           64      9  14.1%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.56           64      5   7.8%   4 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T1117I,C1243F] 
AY.56           64      5   7.8%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,S680F,P681R,D950N] 
AY.56           64      4   6.2%   4 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S939F,D950N] 

C.37            60     15  25.0%   0 [G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,T859N] (consensus)
C.37            60      5   8.3%   1 [G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,P792L,T859N] 
C.37            60      5   8.3%   1 [A27S,G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,T859N] 
C.37            60      4   6.7%   1 [G75V,T76I,V120A,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,T859N] 
C.37            60      3   5.0%   5 [T20I,H66Q,G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,Q675H,Q677H,T859N,D950N] 

AY.22           60     35  58.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] (consensus)
AY.22           60      8  13.3%   5 [T19R,L54F,T95I,G142D,E156G,F157-,R158-,M177I,Q218H,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.22           60      8  13.3%   3 [T19R,T95I,G142D,E156G,F157-,R158-,Q218H,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.22           60      3   5.0%   4 [T19R,T95I,E156G,F157-,R158-,Q218H,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.22           60      2   3.3%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 

P.1             59     27  45.8%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] (consensus)
P.1             59     16  27.1%   1 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] 
P.1             59      2   3.4%   2 [L5F,L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] 
P.1             59      2   3.4%   3 [L18F,T20N,P26S,D138Y,R190S,K417T,K444N,E484K,N501Y,A522V,D614G,H655Y,P681H,T1027I,V1176F] 
P.1             59      1   1.7%   1 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,Q613H,D614G,H655Y,T1027I,V1176F] 

AY.60           59     15  25.4%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.60           59     11  18.6%   1 [T19R,G72W,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.60           59     10  16.9%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.60           59      7  11.9%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,L821I,D950N] 
AY.60           59      3   5.1%   2 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,C1243F] 

P.1.12          54     23  42.6%   0 [L18F,T20N,P26S,D138Y,R190S,R246G,T284I,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] 
P.1.12          54     16  29.6%   1 [L18F,T20N,P26S,D138Y,R190S,R246G,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] (consensus)
P.1.12          54      4   7.4%   3 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] 
P.1.12          54      3   5.6%   2 [L18F,T20N,P26S,D138Y,R190S,R246G,K417T,E484K,N501Y,D614G,H655Y,N679K,T961M,T1027I,V1176F] 
P.1.12          54      2   3.7%   2 [L18F,T20N,P26S,D138Y,L176F,R190S,R246G,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] 

AY.29           53     22  41.5%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.29           53      8  15.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,S494L,D614G,P681R,D950N] 
AY.29           53      4   7.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,E465D,T478K,D614G,P681R,D950N] 
AY.29           53      2   3.8%   2 [T19R,T95I,Y144-,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.29           53      2   3.8%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.24           49     25  51.0%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.24           49      7  14.3%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.24           49      3   6.1%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,D1153Y] 
AY.24           49      2   4.1%   1 [T19R,H69Y,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.24           49      2   4.1%   5 [T19R,I128V,E156G,F157-,R158-,L452R,T478K,Q607H,D614G,P681R,Q949L,D950N] 

B.1.1.529       47     37  78.7%   0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] (consensus)
B.1.1.529       47      2   4.3%   3 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] 
B.1.1.529       47      2   4.3%   3 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] 
B.1.1.529       47      1   2.1%   1 [A67V,H69-,V70-,T95I,L141F,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] 
B.1.1.529       47      1   2.1%   1 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,V367F,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,Q954H,N969K,L981F] 

AY.81           41     15  36.6%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,D950N,D1260Y] (consensus)
AY.81           41      7  17.1%   3 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.81           41      4   9.8%   6 [T19R,D138Y,G142D,L452R,T478K,D614G,P681R,D1260Y] 
AY.81           41      4   9.8%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A694V,D950N,D1260Y] 
AY.81           41      2   4.9%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,D1260Y] 

AY.21           37     19  51.4%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.21           37     11  29.7%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,S494P,D614G,P681R,G946R,D950N] 
AY.21           37      2   5.4%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T470I,T478K,P479S,D614G,P681R,D950N,C1254F] 
AY.21           37      2   5.4%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,P1079S] 
AY.21           37      2   5.4%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,E702Q,D950N,L1063F] 

AY.71           36     10  27.8%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,S1252F] (consensus)
AY.71           36      5  13.9%   1 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,S1252F] 
AY.71           36      4  11.1%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,S1252F] 
AY.71           36      2   5.6%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,N460S,T478K,D614G,P681R,D950N,S1252F] 
AY.71           36      2   5.6%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,S1252F] 

AY.99           36     21  58.3%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.99           36      3   8.3%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.99           36      1   2.8%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q677R,P681R,D950N] 
AY.99           36      1   2.8%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,E1202Q] 
AY.99           36      1   2.8%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.52           36     29  80.6%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,L1141W] (consensus)
AY.52           36      2   5.6%   1 [T19R,G142D,E156G,F157-,R158-,A262S,L452R,T478K,D614G,P681R,D950N,L1141W] 
AY.52           36      1   2.8%   4 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.52           36      1   2.8%   5 [T19I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A845S] 
AY.52           36      1   2.8%   3 [T19R,F59S,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

P.1.15          34     13  38.2%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] (consensus)
P.1.15          34      3   8.8%   1 [L18F,T20N,P26S,D138Y,M153T,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] 
P.1.15          34      3   8.8%   2 [L18F,T20N,P26S,T95S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,G1085E,V1176F] 
P.1.15          34      2   5.9%   3 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,A623S,H655Y,E780Q,A845V,T1027I,V1176F] 
P.1.15          34      2   5.9%   2 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,Q675H,T1027I,G1085E,V1176F] 

AY.95           33      5  15.2%   0 [T19R,G142D,E156G,F157-,R158-,L244S,L452R,T478K,T572I,D614G,P681R,D950N] 
AY.95           33      4  12.1%   1 [T19R,G142D,E156G,F157-,R158-,L244S,L452R,T478K,D614G,P681R,D950N] 
AY.95           33      3   9.1%   1 [T19R,E156G,F157-,R158-,L244S,L452R,T478K,T572I,D614G,P681R,D950N] 
AY.95           33      3   9.1%   5 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,G1219V] 
AY.95           33      2   6.1%   1 [T19R,G142D,E156G,F157-,R158-,L244S,L452R,T478K,T572I,D614G,P681R,D950N,V1189I] 

B.1.640         33     12  36.4%   0 [P9L,E96Q,C136-,N137Y,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H] (consensus)
B.1.640         33     11  33.3%   1 [P9L,E96Q,C136-,N137Y,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H,K1191N] 
B.1.640         33      4  12.1%   1 [P9L,E96Q,C136-,N137Y,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H,D1259H] 
B.1.640         33      2   6.1%   1 [L5F,P9L,E96Q,C136-,N137Y,D138-,P139-,F140-,L141-,G142-,V143-,Y144-,Y145-,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H] 
B.1.640         33      2   6.1%  10 [P9L,E96Q,Y144F,R190S,I210T,R346S,N394S,Y449N,F490R,N501Y,D614G,P681H,T859N,D936H] 

AY.89           33     12  36.4%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.89           33      3   9.1%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.89           33      3   9.1%   2 [T19R,T95I,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.89           33      2   6.1%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,D950N] 
AY.89           33      2   6.1%   3 [T19R,T95I,L452R,T478K,D614G,P681R,D950N] 

AY.16           33     10  30.3%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.16           33      9  27.3%   2 [T19R,G142D,Y144-,E156G,F157-,R158-,D215H,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.16           33      3   9.1%   3 [T19R,Y144-,E156G,F157-,R158-,D215H,L452R,T478K,D614G,P681R,D950N] 
AY.16           33      2   6.1%   4 [T19R,Y144-,E156G,F157-,R158-,D215H,L452R,T478K,D614G,P681R,R682L,D950N] 
AY.16           33      1   3.0%   4 [T19R,D80Y,E156G,F157-,R158-,L452R,T478K,D614G,P681R,T1117I] 

AY.97           33     27  81.8%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.97           33      5  15.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,T1160I] 
AY.97           33      1   3.0%   3 [T19R,G142D,E156G,F157-,R158-,A348V,L452R,T478K,Q613H,D614G,P681R,D950N,N1187Y] 

AY.53           32      5  15.6%   0 [T19R,G142D,E156G,F157-,R158-,G181V,L452R,T478K,D614G,P681R,D950N] 
AY.53           32      4  12.5%   3 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.53           32      3   9.4%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.53           32      3   9.4%   5 [T19R,T95I,E156G,F157-,R158-,E281Q,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.53           32      2   6.2%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.17           26     20  76.9%   0 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.17           26      2   7.7%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.17           26      1   3.8%   3 [L5F,T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.17           26      1   3.8%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 
AY.17           26      1   3.8%   3 [T19R,E156G,F157-,R158-,V433I,L452R,T478K,D614G,P681R,F782Y,D950N,C1250F] 

AY.38           25      6  24.0%   0 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.38           25      3  12.0%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 
AY.38           25      3  12.0%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,H655Y,P681R,D950N] 
AY.38           25      2   8.0%   2 [T19R,E156G,F157-,R158-,A222V,T250S,L452R,T478K,D614G,P681R,D950N] 
AY.38           25      2   8.0%   1 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,V785I,D950N] 

AY.82           25      7  28.0%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.82           25      3  12.0%   2 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.82           25      2   8.0%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.82           25      2   8.0%   2 [T19R,T95I,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.82           25      1   4.0%   2 [T19R,G142D,E156G,F157-,R158-,G257V,L452R,T478K,S494L,D614G,P681R,D950N] 

AY.120.2        24      6  25.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.120.2        24      3  12.5%   4 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] 
AY.120.2        24      3  12.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,S689N,D950N] 
AY.120.2        24      2   8.3%   5 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,N1074S,V1264L] 
AY.120.2        24      2   8.3%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.20.1         22     13  59.1%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,V1104L] (consensus)
AY.20.1         22      1   4.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,M731I,D950N,V1104L] 
AY.20.1         22      1   4.5%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.20.1         22      1   4.5%   2 [T19R,T95I,E156G,F157-,R158-,G446V,L452R,T478K,D614G,P681R,D950N,V1104L] 
AY.20.1         22      1   4.5%   2 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,S640-,N641Y,P681R,D950N,V1104L] 

AY.76           22      7  31.8%   0 [T19R,E156G,F157-,R158-,L452R,T478K,T573I,D614G,P681R,D950N] 
AY.76           22      5  22.7%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,T573I,D614G,P681R,D950N] (consensus)
AY.76           22      2   9.1%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.76           22      2   9.1%   2 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,G946V,D950N] 
AY.76           22      1   4.5%   6 [T19R,L54F,D80Y,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R] 

AY.11           20      7  35.0%   0 [T19R,T95I,N148Y,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A701V,D950N] 
AY.11           20      4  20.0%   6 [T19R,E156G,F157-,R158-,A222V,D253A,L452R,T478K,Q613H,D614G,P681R,D950N] 
AY.11           20      3  15.0%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.11           20      1   5.0%   3 [T19R,T95I,N148Y,E156G,F157-,R158-,T376S,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.11           20      1   5.0%   4 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.48           19      4  21.1%   0 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] 
AY.48           19      2  10.5%   5 [T19R,E156G,F157-,R158-,A222V,L452R,S477I,T478K,D614G,P681R,D950N] 
AY.48           19      2  10.5%   1 [T19R,K77T,E156G,F157-,R158-,L452R,T478K,T547I,D614G,P681R,D950N] 
AY.48           19      1   5.3%   3 [T19R,K77T,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,P809S,D950N,N1187D] 
AY.48           19      1   5.3%   6 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,I850L] 

B.1.177         18      6  33.3%   0 [A222V,D614G,Q675H] 
B.1.177         18      5  27.8%   1 [A222V,D614G] (consensus)
B.1.177         18      2  11.1%   3 [A222V,A262S,P272L,D614G] 
B.1.177         18      1   5.6%   1 [A222V,D614G,Q675H,D1199N] 
B.1.177         18      1   5.6%   5 [L5F,A222V,T572I,D614G,D936H,T1027I] 

AY.19           17      6  35.3%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,S680F,P681R,D950N,D1153Y] 
AY.19           17      3  17.6%   5 [T19R,Y144-,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.19           17      2  11.8%   3 [T19R,T95I,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 
AY.19           17      1   5.9%   4 [T19R,T95I,E156G,F157-,R158-,E281Q,L452R,T478K,D614G,P681R,I850L,D950N,D1153Y,V1264L] 
AY.19           17      1   5.9%   4 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

AZ.5            16      9  56.2%   0 [D80Y,T95I,Y144-,W258L,E484K,D614G,P681H,D796H] (consensus)
AZ.5            16      2  12.5%   2 [D80Y,T95I,Y144-,A243S,W258L,E484K,D614G,P681H,D796H,T859I] 
AZ.5            16      1   6.2%   1 [D80Y,T95I,Y144-,W258L,E484K,D614G,P681H,D796H,P1263L] 
AZ.5            16      1   6.2%   2 [Y144-,W258L,E484K,D614G,P681H,D796H] 
AZ.5            16      1   6.2%   1 [D80Y,T95I,Y144-,W258L,E484K,Q607H,D614G,P681H,D796H] 

AY.50           13      9  69.2%   0 [T19R,G142D,E156G,F157-,R158-,V308L,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.50           13      2  15.4%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.50           13      1   7.7%   2 [T19R,P26L,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 
AY.50           13      1   7.7%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,Y508H,D614G,P681R,D950N] 

P.1.7           13     10  76.9%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] (consensus)
P.1.7           13      1   7.7%   1 [L18F,T20N,P26S,T95I,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] 
P.1.7           13      1   7.7%   4 [L5F,L18F,T20N,P26S,D138Y,V143D,Y144-,Y145-,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] 
P.1.7           13      1   7.7%   2 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T747I,T1027I,V1176F,L1265P] 

AY.2            11      3  27.3%   0 [T19R,V70F,G142D,E156G,F157-,R158-,A222V,K417N,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.2            11      3  27.3%   1 [T19R,V70F,G142D,E156G,F157-,R158-,A222V,K417N,L452R,T478K,D614G,P681R,D950N,V1228L] 
AY.2            11      2  18.2%   4 [T19R,T95I,G142D,E156G,F157-,R158-,W258L,K417N,L452R,T478K,D614G,P681R,D950N] 
AY.2            11      1   9.1%   1 [T19R,V70F,E156G,F157-,R158-,A222V,K417N,L452R,T478K,D614G,P681R,D950N] 
AY.2            11      1   9.1%   3 [T19R,V70F,Y144-,E156G,F157-,R158-,A222V,K417N,L452R,T478K,E484G,D614G,P681R,D950N] 

B               11      6  54.5%   0 [] (consensus)
B               11      1   9.1%   5 [G142D,L452R,T478K,D614G,V1264L] 
B               11      1   9.1%   3 [T19R,L452R,T478K] 
B               11      1   9.1%   5 [G142D,L452R,T478K,D571G,D614G] 
B               11      1   9.1%   1 [S247R] 

AY.15           11      8  72.7%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.15           11      2  18.2%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,G769V,D950N] 
AY.15           11      1   9.1%   3 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,A701S,D950N,A1078S] 

AY.16.1         10      7  70.0%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.16.1         10      1  10.0%   2 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,V615I,P681R,D950N,C1236F] 
AY.16.1         10      1  10.0%   1 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,V615I,P681R,D950N] 
AY.16.1         10      1  10.0%   2 [T19R,G142D,E156G,F157-,R158-,G446S,L452R,T478K,D614G,V615I,P681R,D950N] 

C.1.2            8      3  37.5%   0 [P9L,P25L,C136F,Y144-,W152R,R190S,D215G,A243-,L244-,Y449H,T478K,E484K,N501Y,D614G,H655Y,N679K,T716I,T859N,A879T] 
C.1.2            8      1  12.5%   4 [P9L,C136F,Y144-,R190S,D215G,A243-,L244-,Y449H,E484K,N501Y,D614G,H655Y,N679K,T716I,T859N] 
C.1.2            8      1  12.5%   4 [P9L,P25L,C136F,Y144-,R190S,D215G,A243-,L244-,P384L,Y449H,E484K,N501Y,D614G,H655Y,N679K,T716I,T859N] 
C.1.2            8      1  12.5%   4 [P9L,P25L,C136F,Y144-,R190S,D215G,A243-,L244-,Y449H,T478K,E484K,N501Y,D614G,T630A,H655Y,N679K,T716I,T859N,H1101Q] 
C.1.2            8      1  12.5%   1 [P9L,P25L,W64L,C136F,Y144-,W152R,R190S,D215G,A243-,L244-,Y449H,T478K,E484K,N501Y,D614G,H655Y,N679K,T716I,T859N,A879T] 

P.1.2            7      3  42.9%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,Q675H,T1027I,V1176F] 
P.1.2            7      2  28.6%   1 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] (consensus)
P.1.2            7      1  14.3%   2 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P807L,T1027I,V1176F] 
P.1.2            7      1  14.3%   4 [L18F,T20N,T22I,P26S,D138Y,R190S,T323I,K417T,E484K,N501Y,D614G,H655Y,T791I,T1027I,V1176F] 

B.1              7      2  28.6%   0 [P9L,W152R,N501T,T572I,D614G,H655Y,E1111Q,G1124V] 
B.1              7      2  28.6%  11 [T19R,L452R,T478K,D614G,D950N] 
B.1              7      1  14.3%  11 [T19R,L452R,T478K] 
B.1              7      1  14.3%  29 [T33K,H66Q,E132A,F140L,L141-,Y144-,S151R,D215G,V367F,A372T,Y449H,N450D,L452R,S477N,Q493K,N501Y,D571G,D614G,P681S,L828F,K854E,S939F,V1176F,R1185H] 
B.1              7      1  14.3%  10 [T19R,L452R,T478K,D614G] (consensus)

AY.40            6      2  33.3%   0 [T19R,T95I,G142D,E156G,F157-,R158-,E281Q,L452R,T478K,D614G,P681R,I850L,D950N] 
AY.40            6      1  16.7%   4 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D574Y,D614G,P681R,D950N] 
AY.40            6      1  16.7%   5 [T19R,G142D,E156G,F157-,R158-,A222V,V289I,L452R,T478K,D614G,P681R,D950N] 
AY.40            6      1  16.7%   3 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N,N1187H] 
AY.40            6      1  16.7%   5 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N,V1264L] 

B.1.639          5      3  60.0%   0 [H69-,V70-,M153T,+214QAS,R246N,S247-,Y248-,T478K,E484K,A520S,D614G,Q677R,T859N,D936Y] (consensus)
B.1.639          5      2  40.0%   1 [N30K,H69-,V70-,M153T,+214QAS,R246N,S247-,Y248-,T478K,E484K,A520S,D614G,Q677R,T859N,D936Y] 

B.1.2            5      2  40.0%   0 [D614G] (consensus)
B.1.2            5      1  20.0%   2 [T95I,D614G,D950H] 
B.1.2            5      1  20.0%   3 [Y144-,E484R,D574N,D614G] 
B.1.2            5      1  20.0%   2 [N501T,D614G,T859I] 

P.1.4            5      3  60.0%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] (consensus)
P.1.4            5      1  20.0%   1 [L18F,T20N,P26S,D138Y,Y144-,R190S,K417T,E484K,N501Y,D614G,H655Y,N679K,T1027I,V1176F] 
P.1.4            5      1  20.0%   7 [L18F,T20N,P26S,T95N,D138Y,Y144-,R190S,L216F,P322S,D405G,K417T,E484K,F490L,Q498R,N501Y,D614G,H655Y,N679K,T1027I,V1176F] 

B.1.351          5      2  40.0%   0 [A27S,D80A,D215G,L242-,A243-,L244-,K417N,E484K,N501Y,D614G,A701V] 
B.1.351          5      1  20.0%   2 [D80A,D215G,L242-,A243-,L244-,K417N,E484K,N501Y,E516Q,D614G,A701V] 
B.1.351          5      1  20.0%   7 [P25S,D80A,L141-,G142-,V143-,D215G,L242-,A243-,L244-,R346T,K417N,V483F,E484K,N501Y,D614G,A701V] 
B.1.351          5      1  20.0%   1 [D80A,D215G,L242-,A243-,L244-,K417N,E484K,N501Y,D614G,A701V] (consensus)

AY.49            4      1  25.0%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,K854N,D950N] (consensus)
AY.49            4      1  25.0%   1 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,Q675H,P681R,K854N,D950N] 
AY.49            4      1  25.0%   2 [T19R,E156G,F157-,R158-,L452R,T478K,Q493E,D614G,P681R,K854N,D950N] 
AY.49            4      1  25.0%   4 [T19R,G142D,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

Q.2              4      4 100.0%   0 [H69-,V70-,Y144-,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] (consensus)

AY.55            4      3  75.0%   0 [T19R,K77T,G142D,E156G,F157-,R158-,D215Y,L452R,T478K,D614G,P681R] (consensus)
AY.55            4      1  25.0%   5 [T19R,E156G,F157-,R158-,A222V,L452R,T478K,D614G,P681R,D950N] 

AY.91.1          4      3  75.0%   0 [T19R,T95I,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.91.1          4      1  25.0%   1 [T19R,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] 

AY.115           3      2  66.7%   0 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.115           3      1  33.3%   1 [T19R,T95I,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,A879S,D950N] 

AY.5.1           3      3 100.0%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)

B.1.637          3      2  66.7%   0 [H69-,V70-,D80G,E96Q,Y144-,F157S,L244-,H245Y,R246-,S247-,Y248-,A264V,G446R,L452R,T478R,D614G,P681R,T859N,D936H,D950H,N978S] (consensus)
B.1.637          3      1  33.3%   7 [R78S,D80G,Y144-,F157S,D215H,L244-,H245Y,R246-,S247-,Y248-,G446R,L452R,T478R,D614G,P681R,T859N,D950H,N978S] 

B.1.621.1        3      3 100.0%   0 [T95I,+143T,Y144S,Y145N,R346K,E484K,N501Y,D614G,P681H,D950N] (consensus)

A.2.5            2      2 100.0%   0 [S13I,L141-,G142-,V143-,Y144-,+214AAG,D215Y,L452R,D614G] (consensus)

AY.29.1          2      1  50.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,Q173H,L452R,T478K,D614G,P681R,D950N,M1237I] (consensus)
AY.29.1          2      1  50.0%   5 [T19R,T95I,G142D,L452R,T478K,D614G,P681R,D950N] 

B.1.351.2        2      1  50.0%   0 [L18F,D80A,D215G,L242-,A243-,L244-,K417N,E484K,N501Y,D614G,A701V] (consensus)
B.1.351.2        2      1  50.0%   1 [L18F,D80A,D215G,L242-,A243-,L244-,K417N,E484K,N501Y,D614G,A701V,A1020V] 

B.1.1.318        2      1  50.0%   0 [T95I,Y144-,E484K,D614G,P681H,D796H] (consensus)
B.1.1.318        2      1  50.0%   3 [D80Y,T95I,Y144-,W258L,E484K,D614G,P681H,D796H,D936Y] 

C.36.3           2      2 100.0%   0 [S12F,H69-,V70-,W152R,R346S,L452R,D614G,Q677H,A899S] (consensus)

B.1.626          2      1  50.0%   0 [L18F,A67V,I68-,H69-,V70-,G257S,E484K,F490S,N501T,D614G,T859N,M1237I] (consensus)
B.1.626          2      1  50.0%   1 [L18F,A67V,I68-,H69-,V70-,G257S,E484K,F490S,N501T,D614G,T859N,P1162A,M1237I] 

B.1.429          2      1  50.0%   0 [S13I,W152C,A372T,L452R,S494L,T573I,D614G] (consensus)
B.1.429          2      1  50.0%   3 [S13I,W152C,L452R,D614G] 

AY.18            2      1  50.0%   0 [T19R,G142D,E156G,F157-,R158-,L452R,T478K,D614G,P681R,D950N] (consensus)
AY.18            2      1  50.0%   5 [T19R,A67S,T95I,G142D,E156G,F157-,R158-,E281Q,L452R,T478K,D614G,P681R,I850L,D950N,G1251V] 

P.1.1            2      1  50.0%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,P681H,T1027I,V1176F] (consensus)
P.1.1            2      1  50.0%   2 [L18F,T20N,P26S,D138Y,R190S,E224Q,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] 

B.1.315          2      2 100.0%   0 [D614G,N856S] (consensus)

B.1.234          2      1  50.0%   0 [D614G] (consensus)
B.1.234          2      1  50.0%   2 [Y144-,D614G,A942T] 

C.18             2      1  50.0%   0 [F59L,D614G] (consensus)
C.18             2      1  50.0%   1 [D614G] 

P.1.10           2      1  50.0%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,A845S,T1027I,V1176F] (consensus)
P.1.10           2      1  50.0%   2 [L5F,L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,D614G,H655Y,T1027I,V1176F] 

B.1.525          2      1  50.0%   0 [Q52R,A67V,H69-,V70-,Y144-,E484K,D614G,Q677H,P681L,F888L] (consensus)
B.1.525          2      1  50.0%   1 [Q52R,A67V,H69-,V70-,Y144-,E484K,D614G,Q677H,F888L] 

B.1.177.75       2      1  50.0%   0 [A222V,D614G,V1104L] (consensus)
B.1.177.75       2      1  50.0%   2 [A222V,D614G,P1112Q] 

P.2              1      1 100.0%   0 [E484K,D614G,V1176F] (consensus)

B.1.1.397        1      1 100.0%   0 [L5F,D80N,D138Y,G142S,M153T,L244S,G261D,S477N,F490Y,N556K,D614G,A1020V,I1114V] (consensus)

B.1.258.17       1      1 100.0%   0 [H69-,V70-,L189F,N439K,D614G,V772I] (consensus)

B.1.1            1      1 100.0%   0 [Y144-,L452R,T478K,F565L,A570D,D614G,P681R,S982A] (consensus)

B.1.395          1      1 100.0%   0 [N74K,T95I,T250N,E484D,D614G,H655Y] (consensus)

B.1.517          1      1 100.0%   0 [Q493R,N501T,Q613H,D614G,S939F,E1111K] (consensus)

B.1.466.2        1      1 100.0%   0 [N439K,D614G,P681R,V1104L] (consensus)

Q.7              1      1 100.0%   0 [H69-,V70-,Y144-,A163V,M177T,P251L,L303F,V308L,K444E,Y449H,Y453F,N460K,G485V,N501Y,A570D,D614G,P681H,T716I,S982A,D1118H] (consensus)

B.1.177.18       1      1 100.0%   0 [T20I,I68T,Y144-,A222V,Q493L,T573I,E583D,D614G,A1087S] (consensus)

B.1.617.3        1      1 100.0%   0 [T19R,K417N,L452R,E484Q,D614G,P681R,D950N] (consensus)

A.2.5.2          1      1 100.0%   0 [L141-,G142-,V143-,+214AAG,D215Y,L452R,D614G] (consensus)

B.1.177.51       1      1 100.0%   0 [A222V,F543L,D614G] (consensus)

B.1.1.37         1      1 100.0%   0 [T19I,L24S,P25-,P26-,A27-,G142D,V213G,G339D,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,S477N,T478K,E484A,Q493R,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus)

B.1.469          1      1 100.0%   0 [D614G,P681H] (consensus)

B.1.1.113        1      1 100.0%   0 [D614G] (consensus)

B.1.1.46         1      1 100.0%   0 [D614G] (consensus)

B.1.9            1      1 100.0%   0 [D614G] (consensus)

B.1.177.33       1      1 100.0%   0 [A222V,D614G,G639S] (consensus)

B.1.160.22       1      1 100.0%   0 [Y144-,T385I,S477N,D614G] (consensus)

B.1.575          1      1 100.0%   0 [S494P,D614G,P681H,T716I] (consensus)

P.1.14           1      1 100.0%   0 [L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N501Y,T572I,D614G,H655Y,T1027I,V1176F] (consensus)

B.1.177.28       1      1 100.0%   0 [A222V,D614G] (consensus)

B.1.509          1      1 100.0%   0 [H245Y,D364N,Q493R,S494A,D614G] (consensus)

B.1.240          1      1 100.0%   0 [D614G,A852S] (consensus)

B.1.630          1      1 100.0%   0 [P9L,C136F,Y144-,A222V,A243-,L244-,D427N,L452R,T478R,E484Q,D614G,H655Y,D950N] (consensus)

C.37.1           1      1 100.0%   0 [G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,F490S,D614G,T859N] (consensus)

B.1.1.242        1      1 100.0%   0 [D614G] (consensus)

B.1.219          1      1 100.0%   0 [E281V,D614G] (consensus)

AY.8             1      1 100.0%   0 [T19R,T95I,G142D,E156G,F157-,R158-,E281Q,L452R,T478K,D614G,P681R,I850L,D950N] (consensus)

B.1.22           1      1 100.0%   0 [P26S,D614G] (consensus)

B.1.1.263        1      1 100.0%   0 [A67V,H69-,V70-,T95I,G142D,V143-,Y144-,Y145-,N211-,L212I,+214EPE,G339D,S371L,S373P,S375F,K417N,N440K,G446S,S477N,T478K,E484A,Q493R,G496S,Q498R,N501Y,Y505H,T547K,D614G,H655Y,N679K,P681H,N764K,D796Y,N856K,L981F] (consensus)

B.1.343          1      1 100.0%   0 [S13I,C136F,D215G,S254F,F486L,N501T,A520S,D614G,V622A,I805V] (consensus)

B.1.1.385        1      1 100.0%   0 [D614G,Q675H] (consensus)

B.1.629          1      1 100.0%   0 [C15F,H69-,V70-,K77E,T95I,P139T,R190K,L242-,A243P,R357I,A372T,A475V,T478K,E484K,T572N,T573I,D614G,N764K] (consensus)

B.1.177.52       1      1 100.0%   0 [A222V,D614G,P1162R] (consensus)

B.1.160          1      1 100.0%   0 [L5F,P9S,S477N,D614G,Q675R] (consensus)

 

last modified: Sun Aug 29 01:25 2021



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