COVID-19 Viral Genome Analysis Pipeline
Enabled by data from
Most common forms based on Pango lineage designations
Last update: Sep 25, 2023
Geographically local data, different time windows, and different proteins can be evaluated here
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SPIKE sequences: Short list of All days
Compute mutations relative to XBB.1.5 baseline sequence
As new lineages emerge, there are often many sequences with many ambiguous base calls. Our pipeline filters out such sequences, and as a consequence we undercount the number of sequences in GISAID that have been specified as members of related Pango lineages. Our strategy, however, enables us to use strictly high quality sequences to identify and track the common forms in emerging lineages.
COMMON FORMS OF SPIKE WITH A GIVEN PANGO LINEAGE DESIGNATION
For each lineage, we show the most common forms of SPIKE, as well as their counts within (and percentages of) the lineage. [Note that if a lineage contains several divergent forms, the consensus form might not be found among these common forms.] Also shown is the Hamming distance (HD) between each form and the most common form in that lineage. Deletions relative to the baseline reference strain are indicated with a dash (e.g. the two amino acid deletion at positions 156-157 is indicated with 'E156-,F157-'), and insertions are denoted by a plus sign (e.g. an extra T at position 143 is written '+143T'). [Note: Mutation strings are relative to baseline XBB.1.5].
We show the 5 most common forms. This output is based on sequences sampled from 2013-07-24 to 2023-09-19.
Baseline XBB.1.5: [T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K]
Pango Lineage Form Form Lineage Count Count Pct HD [Form as mutation string] B.1.1.7 929620 591013 63.6% 0 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.7 929620 23603 2.5% 1 +[H69-,V70-,A570D,T716I,S982A,D1118H,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.7 929620 20027 2.2% 1 +[L5F,H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.7 929620 10404 1.1% 1 +[H69-,V70-,W152R,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.7 929620 7713 0.8% 1 +[H69-,V70-,S98F,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BA.2 821911 624613 76.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2 821911 18716 2.3% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2 821911 17003 2.1% 4 +[V213G,G339D,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2 821911 7445 0.9% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2 821911 5250 0.6% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] AY.4 583086 350103 60.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4 583086 12499 2.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4 583086 10548 1.8% 1 +[T19R,T95I,D138H,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4 583086 8483 1.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,L1141F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4 583086 5362 0.9% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1 462245 354207 76.6% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1 462245 14839 3.2% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1 462245 6243 1.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.1 462245 3869 0.8% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1 462245 3491 0.8% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.1 226951 166116 73.2% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.1 226951 3561 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.1 226951 3077 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.1 226951 2517 1.1% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.1 226951 1474 0.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.12.1 214725 166166 77.4% 0 +[V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.12.1 214725 11825 5.5% 1 +[N164K,V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12.1 214725 2618 1.2% 1 +[V213G,G339D,L452Q,Q493R,S704L,A879V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12.1 214725 2400 1.1% 1 +[V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.12.1 214725 1931 0.9% 1 +[V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.2 211182 145652 69.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2 211182 3169 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2 211182 2981 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2 211182 1907 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.2 211182 1904 0.9% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.103 200625 108776 54.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.103 200625 24586 12.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.103 200625 3112 1.6% 1 +[T19R,D80Y,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.103 200625 1668 0.8% 1 +[T19R,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.103 200625 1199 0.6% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43 188837 93134 49.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43 188837 27634 14.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43 188837 1975 1.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43 188837 1829 1.0% 1 +[V6F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43 188837 1525 0.8% 1 +[T19R,A67S,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1 173779 131214 75.5% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1 173779 7283 4.2% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1 173779 1658 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1 173779 1456 0.8% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1 173779 1258 0.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] BA.5.1 162530 116650 71.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1 162530 4492 2.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1 162530 2593 1.6% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1 162530 1752 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1 162530 1746 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] AY.44 158696 87873 55.4% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.44 158696 20299 12.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.44 158696 1210 0.8% 1 +[T19R,E156G,F157-,R158-,R214H,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.44 158696 1025 0.6% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.44 158696 934 0.6% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.2 158293 37568 23.7% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.617.2 158293 29374 18.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.2 158293 7814 4.9% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.2 158293 6698 4.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.2 158293 4527 2.9% 1 +[T19R,K77T,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122 128889 47770 37.1% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122 128889 14070 10.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122 128889 3566 2.8% 1 +[T19R,E156G,F157-,R158-,T240I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122 128889 2574 2.0% 1 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122 128889 2520 2.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A879S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.9 127787 95609 74.8% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.9 127787 6515 5.1% 4 +[V213G,G339D,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9 127787 3455 2.7% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.9 127787 1108 0.9% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9 127787 555 0.4% 1 +[L179P,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.1 113453 67906 59.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1 113453 12795 11.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1 113453 834 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.1 113453 746 0.7% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1 113453 622 0.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AY.3 111425 51497 46.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.3 111425 13737 12.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3 111425 4834 4.3% 1 +[T19R,V70I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3 111425 1872 1.7% 2 +[T19R,V70I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3 111425 1649 1.5% 2 +[T19R,V70I,E156G,F157-,R158-,M177I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.2 106332 53964 50.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.2 106332 6068 5.7% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.2 106332 2892 2.7% 2 +[L18F,E780Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.2 106332 2805 2.6% 1 +[Q677P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.2 106332 2501 2.4% 1 +[Q173K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5 100077 65290 65.2% 0 (consensus) XBB.1.5 100077 2653 2.7% 1 +[H146K]-[H146Q] XBB.1.5 100077 1504 1.5% 1 -[K417N] XBB.1.5 100077 893 0.9% 1 +[L5F] XBB.1.5 100077 482 0.5% 1 -[R408S] AY.25.1 97436 63804 65.5% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.25.1 97436 6732 6.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25.1 97436 951 1.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A846S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25.1 97436 850 0.9% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25.1 97436 622 0.6% 1 +[T19R,V70F,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25 91300 34556 37.8% 0 +[T19R,S112L,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.25 91300 18064 19.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25 91300 8337 9.1% 1 +[T19R,S112L,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25 91300 4547 5.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25 91300 1367 1.5% 1 +[T19R,S112L,E156G,F157-,R158-,L452R,A522V,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.3 86329 65028 75.3% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3 86329 3444 4.0% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3 86329 1408 1.6% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3 86329 824 1.0% 2 +[V213G,G339D,Q493R]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3 86329 547 0.6% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.1.15 84453 65762 77.9% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.15 84453 2952 3.5% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15 84453 918 1.1% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,K854N,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15 84453 705 0.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.15 84453 618 0.7% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,L452R,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S] B.1 83307 52522 63.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1 83307 1433 1.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1 83307 1242 1.5% 1 +[D936Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1 83307 1143 1.4% 1 +[N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1 83307 846 1.0% 2 +[M153T,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.17.2 80673 58803 72.9% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.17.2 80673 5588 6.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,F643L,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17.2 80673 1968 2.4% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17.2 80673 517 0.6% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17.2 80673 396 0.5% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,S371L,Q493R,G496S,T547K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.29 79761 58999 74.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.29 79761 1473 1.8% 1 +[T19R,T95I,E156G,F157-,R158-,R237S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29 79761 1449 1.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29 79761 1079 1.4% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29 79761 820 1.0% 1 +[T19R,T95I,E156G,F157-,R158-,R408I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.5 72396 56691 78.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.5 72396 723 1.0% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.5 72396 625 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BF.5 72396 435 0.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.5 72396 266 0.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.4.2 71994 50776 70.5% 0 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.2 71994 1341 1.9% 1 +[T19R,V36F,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2 71994 997 1.4% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,H1083Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2 71994 692 1.0% 1 +[L5F,T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2 71994 659 0.9% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177 60421 23579 39.0% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177 60421 13005 21.5% 1 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177 60421 3486 5.8% 3 +[A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177 60421 1253 2.1% 2 +[A222V,Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177 60421 959 1.6% 3 +[A222V,D1163Y,G1167V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1 58461 34523 59.1% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1 58461 1582 2.7% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,A688V,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1 58461 1484 2.5% 1 +[L18F,T20N,P26S,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1 58461 1483 2.5% 1 +[L18F,T20N,P26S,D138Y,R190S,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1 58461 575 1.0% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,D427N,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.2 58283 51958 89.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.2 58283 1007 1.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,M153T,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.2 58283 515 0.9% 1 +[A67V,H69-,V70-,T76I,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.2 58283 341 0.6% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.2 58283 270 0.5% 1 +[A67V,H69-,V70-,D88E,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.100 58210 30438 52.3% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.100 58210 7740 13.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.100 58210 654 1.1% 1 +[T19R,T95I,E156G,F157-,R158-,T385I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.100 58210 626 1.1% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.100 58210 569 1.0% 1 +[T19R,P82T,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.5 46277 36228 78.3% 0 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.5 46277 798 1.7% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.5 46277 631 1.4% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V,K1073T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5 46277 463 1.0% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5 46277 384 0.8% 1 +[L5F,H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1 45495 36277 79.7% 0 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.1 45495 936 2.1% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.1 45495 845 1.9% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.4.1 45495 207 0.5% 1 +[V3G,H69-,V70-,V213G,G339D,R346I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1 45495 180 0.4% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.18 43677 18632 42.7% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.18 43677 18171 41.6% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.18 43677 931 2.1% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.18 43677 791 1.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.18 43677 387 0.9% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.5 42553 28017 65.8% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.5 42553 3650 8.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5 42553 703 1.7% 1 +[T19R,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5 42553 427 1.0% 1 +[T19R,E156G,F157-,R158-,T376I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5 42553 345 0.8% 2 +[T19R,E156G,F157-,R158-,L452R,Q613H,P681R,V772I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.10 41595 33301 80.1% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.10 41595 1069 2.6% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.10 41595 817 2.0% 1 +[V213G,G339D,Q493R,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.10 41595 560 1.3% 4 +[V213G,G339D,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.10 41595 456 1.1% 1 +[V213G,G339D,Q493R]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6 40475 30956 76.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.6 40475 671 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.6 40475 434 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.4.6 40475 303 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6 40475 274 0.7% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1 39339 23920 60.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1 39339 794 2.0% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1 39339 355 0.9% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1 39339 261 0.7% 1 +[L18F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1 39339 258 0.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.1.1 36944 28000 75.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.1 36944 899 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.1.1 36944 321 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BE.1.1 36944 295 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.1 36944 269 0.7% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7 36558 25341 69.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7 36558 646 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7 36558 476 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7 36558 351 1.0% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7 36558 258 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BQ.1 36441 19336 53.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1 36441 6380 17.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1 36441 607 1.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1 36441 361 1.0% 1 +[H69-,V70-,H146-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1 36441 349 1.0% 1 +[H69-,V70-,V213G,P251H,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] AY.39 35031 16482 47.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.39 35031 4156 11.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39 35031 1118 3.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39 35031 808 2.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39 35031 791 2.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.526 34596 15189 43.9% 0 +[L5F,T95I,D253G,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.526 34596 5977 17.3% 4 +[L5F,T95I,D253G,Q957R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.526 34596 2135 6.2% 2 +[L5F,T95I,D253G,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.526 34596 1038 3.0% 1 +[L5F,T95I,D253G,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.526 34596 790 2.3% 5 +[L5F,L18F,T95I,D253G,Q957R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.6 31241 24213 77.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.6 31241 437 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.6 31241 359 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.6 31241 181 0.6% 1 +[H69-,V70-,V213G,G339D,K444R,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.6 31241 153 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.98 30974 16087 51.9% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.98 30974 1696 5.5% 2 +[T19R,E156G,F157-,R158-,P251L,L452R,P681R,D950N,D1127G]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98 30974 1492 4.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98 30974 951 3.1% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98 30974 943 3.0% 1 +[T19R,E96V,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.17 30468 22589 74.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.17 30468 1024 3.4% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17 30468 722 2.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,S1147L]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17 30468 312 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.17 30468 285 0.9% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.9.2 29914 16095 53.8% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.9.2 29914 3838 12.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2 29914 945 3.2% 1 +[T19R,A67V,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2 29914 348 1.2% 1 +[T19R,E156G,F157-,R158-,D215H,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2 29914 291 1.0% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,G1124V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.18 28101 23142 82.4% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.18 28101 597 2.1% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.18 28101 297 1.1% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.1.1.18 28101 215 0.8% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.18 28101 204 0.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] AY.126 27896 10875 39.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,I850L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.126 27896 2890 10.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,I850L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.126 27896 491 1.8% 3 +[T19R,E156G,F157-,R158-,L452R,P681R,S689I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.126 27896 474 1.7% 1 +[T19R,T95I,E156G,F157-,R158-,E281Q,L452R,P681R,I850L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.126 27896 448 1.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160 27451 20383 74.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.160 27451 386 1.4% 1 +[T20I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160 27451 208 0.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160 27451 191 0.7% 1 +[A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160 27451 178 0.6% 1 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.26 27342 7198 26.3% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.26 27342 5538 20.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,N1074S,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.26 27342 2582 9.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.26 27342 2196 8.0% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,N1074S,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.26 27342 619 2.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,T547I,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.47 25980 14757 56.8% 0 +[T19R,E156G,F157-,R158-,A222V,V289I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.47 25980 5225 20.1% 1 +[T19R,E156G,F157-,R158-,A222V,V289I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.47 25980 364 1.4% 2 +[T19R,E156G,F157-,R158-,A222V,V289I,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.47 25980 211 0.8% 1 +[L5F,T19R,E156G,F157-,R158-,A222V,V289I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.47 25980 111 0.4% 2 +[L5F,T19R,E156G,F157-,R158-,A222V,V289I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.4 25833 10654 41.2% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4 25833 7649 29.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4 25833 575 2.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4 25833 398 1.5% 2 +[H69-,V70-,V213G,G339D,L452R,F486V,S640F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4 25833 382 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S,D936N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.1.1 25732 19349 75.2% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.1 25732 816 3.2% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.1.1 25732 711 2.8% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.1 25732 252 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F,D1259H]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.1 25732 240 0.9% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] B.1.429 24638 16048 65.1% 0 +[S13I,W152C,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.429 24638 1978 8.0% 1 +[S13I,P26S,W152C,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.429 24638 261 1.1% 1 +[L5F,S13I,W152C,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.429 24638 227 0.9% 1 +[S13I,W152C,A222V,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.429 24638 134 0.5% 1 +[S13I,W152C,L452R,L938F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.2 24243 13888 57.3% 0 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.2.2 24243 2166 8.9% 1 +[S13T,T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.2 24243 1339 5.5% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,T299I,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.2 24243 1008 4.2% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1133I,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.2 24243 930 3.8% 1 +[L18F,T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119 24215 8724 36.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.119 24215 4553 18.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P809S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119 24215 1920 7.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119 24215 1232 5.1% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P809S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119 24215 420 1.7% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P809S,G946R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120 21169 11437 54.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.120 21169 3186 15.1% 1 +[T19R,T51I,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120 21169 532 2.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120 21169 303 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,V407I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120 21169 285 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,R1091H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98.1 20453 9836 48.1% 0 +[T19R,E156G,F157-,R158-,P251L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.98.1 20453 4493 22.0% 1 +[T19R,E156G,F157-,R158-,P251L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98.1 20453 421 2.1% 1 +[T19R,D80Y,E156G,F157-,R158-,P251L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98.1 20453 292 1.4% 2 +[T19R,E156G,F157-,R158-,P251L,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.98.1 20453 233 1.1% 1 +[T19R,E156G,F157-,R158-,P251L,L452R,P681R,A942S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Unassigned 20085 5127 25.5% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] Unassigned 20085 1935 9.6% 5 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] Unassigned 20085 1743 8.7% 30 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Unassigned 20085 1145 5.7% 33 +[I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Unassigned 20085 864 4.3% 35 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AY.121 19877 7594 38.2% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.121 19877 3263 16.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.121 19877 683 3.4% 1 +[T19R,T95I,E156G,F157-,R158-,E180Q,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.121 19877 221 1.1% 2 +[T19R,T95I,E156G,F157-,R158-,E180Q,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.121 19877 190 1.0% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.20 19838 5733 28.9% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.20 19838 2846 14.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.20 19838 2011 10.1% 1 +[T19R,T95I,K97E,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.20 19838 973 4.9% 2 +[T19R,T95I,K97E,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.20 19838 714 3.6% 2 +[T19R,T95I,K97E,E156G,F157-,R158-,L452R,P681R,D950N,V1104L,V1177I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.1 19724 13363 67.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1 19724 855 4.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1 19724 835 4.2% 1 +[H69-,V70-,M153I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1 19724 308 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.1 19724 139 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] AY.99.2 19619 8171 41.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.99.2 19619 4072 20.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.2 19619 1444 7.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.2 19619 192 1.0% 1 +[T19R,E156G,F157-,R158-,D178H,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.2 19619 142 0.7% 1 +[T19R,E156G,F157-,R158-,L452R,S640F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.214 19355 11098 57.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.214 19355 2871 14.8% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.214 19355 701 3.6% 1 +[I720V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.214 19355 324 1.7% 1 +[S256L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.214 19355 319 1.6% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.519 19191 13142 68.5% 0 +[T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.519 19191 432 2.3% 1 +[L5F,T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.519 19191 235 1.2% 1 +[T732A,E1258D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.519 19191 190 1.0% 2 +[A292S,T604A,T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.519 19191 186 1.0% 1 +[P174S,T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BA.5 18836 12631 67.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5 18836 518 2.8% 1 +[H69-,V70-,V213G,S255F,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5 18836 360 1.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5 18836 315 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,N460S,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5 18836 226 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.6 18798 11222 59.7% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.6 18798 1569 8.3% 2 +[T19R,T22I,A67V,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.6 18798 444 2.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.6 18798 350 1.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,I1115V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.6 18798 255 1.4% 1 +[T19R,E156G,F157-,R158-,L452R,V483F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.27 18550 12065 65.0% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.27 18550 3030 16.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.27 18550 361 1.9% 1 +[T19R,E156G,F157-,R158-,L179F,A222V,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.27 18550 247 1.3% 1 +[L18F,T19R,E156G,F157-,R158-,A222V,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.27 18550 207 1.1% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,Q613H,P681R,A684S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.127 18516 7028 38.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.127 18516 1354 7.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,T859N,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.127 18516 1036 5.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.127 18516 743 4.0% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.127 18516 624 3.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,D574N,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.10 18276 13255 72.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.10 18276 805 4.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.10 18276 180 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.10 18276 176 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.10 18276 153 0.8% 2 +[W64C,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.125 17333 8313 48.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.125 17333 4195 24.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.125 17333 291 1.7% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.125 17333 291 1.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,A879S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.125 17333 208 1.2% 1 +[L18F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.14 16970 10669 62.9% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.14 16970 905 5.3% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.14 16970 341 2.0% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,I844V,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.14 16970 311 1.8% 1 +[L18F,T20N,P26S,D138Y,R190S,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.14 16970 277 1.6% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,L938F,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.20 16961 11470 67.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.20 16961 467 2.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.20 16961 321 1.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.20 16961 241 1.4% 1 +[H69-,V70-,K147T,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.20 16961 220 1.3% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.20 16184 12832 79.3% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.20 16184 467 2.9% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.20 16184 148 0.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.20 16184 123 0.8% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.1.20 16184 105 0.6% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.46.6 16092 7205 44.8% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46.6 16092 3429 21.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.6 16092 333 2.1% 1 +[T19R,H69Y,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.6 16092 299 1.9% 1 +[T19R,E156G,F157-,R158-,T323K,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.6 16092 235 1.5% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.15.1 16080 13370 83.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,I1081V]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.15.1 16080 300 1.9% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,I1081V]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15.1 16080 120 0.7% 1 +[A67V,H69-,V70-,T95I,D138N,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,I1081V]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15.1 16080 101 0.6% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,I1081V]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15.1 16080 72 0.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,I1081V]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] AY.42 15931 3743 23.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.42 15931 3011 18.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,T719I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.42 15931 2000 12.6% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,T719I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.42 15931 1742 10.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.42 15931 268 1.7% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,T719I,T732I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.75 15229 8488 55.7% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.75 15229 2461 16.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.75 15229 164 1.1% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.75 15229 141 0.9% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,T1231A]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.75 15229 129 0.8% 1 +[T19R,E156G,F157-,R158-,A222V,P251L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.1 15086 11804 78.2% 0 +[T19R,V36F,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.2.1 15086 359 2.4% 1 +[T19R,V36F,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,A899S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.1 15086 262 1.7% 1 +[T19R,V36F,G75R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.1 15086 206 1.4% 1 +[T19R,V36F,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,N1187S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.1 15086 197 1.3% 1 +[T19R,V36F,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,P809L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.5 14982 14452 96.5% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.5 14982 57 0.4% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.5 14982 46 0.3% 1 +[V213G,R214H,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.5 14982 34 0.2% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.5 14982 26 0.2% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.16 14572 8575 58.8% 0 +[E180V,T478R]-[T478K] (consensus) XBB.1.16 14572 326 2.2% 1 +[E180V,T478R]-[K417N,T478K] XBB.1.16 14572 212 1.5% 1 +[H146K,E180V,T478R]-[H146Q,T478K] XBB.1.16 14572 158 1.1% 1 +[L5F,E180V,T478R]-[T478K] XBB.1.16 14572 133 0.9% 1 +[E180V,K304Q,T478R]-[T478K] AY.118 14512 8202 56.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.118 14512 2311 15.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.118 14512 476 3.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.118 14512 163 1.1% 1 +[V11I,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.118 14512 127 0.9% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.23 14416 12451 86.4% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.23 14416 177 1.2% 1 +[V213G,G339D,Q493R,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.23 14416 114 0.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.23 14416 111 0.8% 2 +[V213G,G339D,K356R,Q493R,A845G]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.23 14416 99 0.7% 1 +[K187R,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.23 13268 7493 56.5% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.23 13268 1405 10.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.23 13268 354 2.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A845S,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.23 13268 172 1.3% 3 +[T19R,H69-,V70-,E156G,F157-,R158-,D215N,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.23 13268 142 1.1% 1 +[T19R,E156G,F157-,R158-,D215Y,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.9 13097 9664 73.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.9 13097 407 3.1% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.9 13097 261 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.9 13097 120 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.9 13097 91 0.7% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.30 12929 10149 78.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.30 12929 276 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.30 12929 222 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.30 12929 113 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.30 12929 97 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.39.1 12879 8305 64.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.39.1 12879 1657 12.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1 12879 197 1.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1 12879 164 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,V227I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1 12879 133 1.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,S813N,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.243 12840 4286 33.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.243 12840 2770 21.6% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.243 12840 613 4.8% 2 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.243 12840 374 2.9% 3 +[A520S,Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.243 12840 373 2.9% 1 +[Q1071L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] CH.1.1 12747 8469 66.4% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1 12747 140 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,Q1113K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1 12747 131 1.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1 12747 121 0.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,P621S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1 12747 112 0.9% 5 +[K147E,W152R,F157L,+209V,N211G,L212-,V213-,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.5.1.22 12716 9569 75.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.22 12716 513 4.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.22 12716 314 2.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.22 12716 107 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.22 12716 93 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,L1244F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.1 12586 11070 88.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.1 12586 202 1.6% 1 +[V213G,T240P,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.1 12586 101 0.8% 1 +[V213G,G339D,Q493R,E654Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.1 12586 95 0.8% 1 +[V213G,A262S,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.1 12586 71 0.6% 1 +[V213G,G339D,Q493R,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.33 12398 2662 21.5% 0 +[T19R,T29A,E156G,F157-,R158-,T250I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.33 12398 2001 16.1% 2 +[T19R,T29A,E156G,F157-,R158-,T250I,T299I,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.33 12398 1299 10.5% 1 +[T19R,T29A,E156G,F157-,R158-,T250I,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.33 12398 816 6.6% 3 +[T19R,T29A,E156G,F157-,R158-,T250I,T299I,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.33 12398 666 5.4% 1 +[T19R,T29A,E156G,F157-,R158-,T250I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.6 12389 8038 64.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.6 12389 793 6.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.6 12389 148 1.2% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.6 12389 126 1.0% 1 +[H69-,V70-,Q183P,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.6 12389 115 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] B.1.177.21 12051 9279 77.0% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.21 12051 669 5.6% 1 +[A222V,G1219C]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.21 12051 471 3.9% 1 +[A222V,P812S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.21 12051 135 1.1% 1 +[W64C,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.21 12051 129 1.1% 1 +[G181R,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.23 11911 8658 72.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.23 11911 316 2.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.23 11911 155 1.3% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.23 11911 118 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.23 11911 92 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A879S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.1 11653 10260 88.0% 0 +[V213G,G339D,Q493R,Q677E]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.1 11653 100 0.9% 1 +[V213G,G339D,Q493R,Q677E,R847K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.1 11653 74 0.6% 1 +[V213G,G339D,Q493R,Q677E,T732I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.1 11653 67 0.6% 1 +[V213G,G339D,Q493R,Q677E,R1014K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.1 11653 56 0.5% 1 +[L5F,V213G,G339D,Q493R,Q677E]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.221 11562 8360 72.3% 0 +[S98F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.221 11562 325 2.8% 1 +[S98F,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.221 11562 112 1.0% 1 +[S98F,P812S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.221 11562 96 0.8% 1 +[S98F,K182R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.221 11562 83 0.7% 2 +[S98F,A1078S,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.1 11394 5776 50.7% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.3.1 11394 2329 20.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.1 11394 178 1.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A846V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.1 11394 125 1.1% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,A701V,A846V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.1 11394 116 1.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.14 10731 8918 83.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.14 10731 134 1.2% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.14 10731 134 1.2% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.14 10731 88 0.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.1.14 10731 71 0.7% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.5.1.1 10697 8265 77.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.1 10697 162 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.1 10697 117 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.1 10697 106 1.0% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.1 10697 86 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] AY.117 10635 5882 55.3% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.117 10635 1414 13.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.117 10635 275 2.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1163Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.117 10635 158 1.5% 1 +[T19R,T95I,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.117 10635 113 1.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1199N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.637 10511 5620 53.5% 0 +[D80G,F157S,L452R,T859N,D950H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.637 10511 859 8.2% 1 +[D80G,F157S,L452R,T791I,T859N,D950H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.637 10511 351 3.3% 1 +[D80G,S155R,F157S,L452R,T859N,D950H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.637 10511 290 2.8% 1 +[D80G,F157S,L452R,T859N,D950H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.637 10511 169 1.6% 2 +[H69Y,D80G,F157S,L452R,T791I,T859N,D950H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.15 10500 8618 82.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.15 10500 315 3.0% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.15 10500 153 1.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.15 10500 108 1.0% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.15 10500 52 0.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,V826L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.46.5 10269 8222 80.1% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46.5 10269 224 2.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.5 10269 118 1.1% 1 +[T19R,E156G,F157-,R158-,L452R,E583D,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.5 10269 115 1.1% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.5 10269 109 1.1% 1 +[T19R,E156G,F157-,R158-,L452R,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351 10165 2894 28.5% 0 +[D80A,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.351 10165 2286 22.5% 1 +[L18F,D80A,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351 10165 434 4.3% 2 +[L18F,D80A,D215G,L242-,A243-,L244-,E484K,A701V,A899S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351 10165 402 4.0% 1 +[D80A,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351 10165 196 1.9% 2 +[L18F,D80A,D215G,L242-,A243-,L244-,P384L,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258 10107 5447 53.9% 0 +[H69-,V70-,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.258 10107 547 5.4% 2 +[N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258 10107 269 2.7% 2 +[H69-,V70-,L189F,N439K,V772I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258 10107 222 2.2% 3 +[N439K,A688V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258 10107 217 2.1% 1 +[H69-,V70-,N439K,L1063F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.69 9966 3872 38.9% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.69 9966 2636 26.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.69 9966 818 8.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.69 9966 196 2.0% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.69 9966 127 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.284 9584 3747 39.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.284 9584 3577 37.3% 1 +[M153T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.284 9584 486 5.1% 3 +[M153T,G184S,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.284 9584 185 1.9% 2 +[M153T,P793S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.284 9584 135 1.4% 2 +[M153T,S255Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1 9554 5806 60.8% 0 +[F486S]-[F486P] (consensus) XBB.1 9554 314 3.3% 1 +[F486S]-[K417N,F486P] XBB.1 9554 166 1.7% 1 +[H146K,F486S]-[H146Q,F486P] XBB.1 9554 98 1.0% 1 +[F486S]-[G142D,F486P] XBB.1 9554 95 1.0% 4 -[S477N,T478K,E484A,F486P] BA.2.18 9494 7870 82.9% 0 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.18 9494 202 2.1% 1 +[V213G,S254F,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.18 9494 184 1.9% 1 +[L176F,V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.18 9494 180 1.9% 1 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.18 9494 76 0.8% 1 +[L5F,V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] R.1 9465 7074 74.7% 0 +[W152L,E484K,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) R.1 9465 308 3.3% 1 +[W152L,E484K,G769V,K795N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] R.1 9465 277 2.9% 1 +[W152L,E484K,G769V,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] R.1 9465 118 1.2% 1 +[W152L,E484K,N751D,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] R.1 9465 117 1.2% 1 +[W152L,S255F,E484K,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.427 9444 4574 48.4% 0 +[S13I,W152C,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.427 9444 1723 18.2% 1 +[S13I,W152C,W258L,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.427 9444 493 5.2% 1 +[S13I,W152C,L452R,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.427 9444 158 1.7% 1 +[P9L,S13I,W152C,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.427 9444 101 1.1% 1 +[L5F,S13I,W152C,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.21 9296 7648 82.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.21 9296 103 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T1116N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.21 9296 98 1.1% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.21 9296 90 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S691P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.21 9296 69 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.4.6 9219 6232 67.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.6 9219 714 7.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,E484Q,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.6 9219 501 5.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,M1237I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.6 9219 286 3.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.6 9219 120 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,A222S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.3 9194 6141 66.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3 9194 121 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1.3 9194 83 0.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,N481K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3 9194 70 0.8% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,P631S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3 9194 54 0.6% 1 +[K147E,W152R,F157L,I210V,V213G,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] EG.5.1.1 9161 6161 67.3% 0 +[Q52H,F456L] (consensus) EG.5.1.1 9161 224 2.4% 1 +[Q52H,H146K,F456L]-[H146Q] EG.5.1.1 9161 189 2.1% 3 +[Q52H,+251V,D253-,F456L]-[G252V] EG.5.1.1 9161 99 1.1% 1 +[Q52H,L455F,F456L] EG.5.1.1 9161 67 0.7% 1 +[Q52H,F456L,S494P] AY.36 9101 4966 54.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.36 9101 981 10.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.36 9101 744 8.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,E484Q,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.36 9101 157 1.7% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,E484Q,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.36 9101 122 1.3% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.26 8950 5277 59.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.26 8950 928 10.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.26 8950 345 3.9% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.26 8950 132 1.5% 1 +[T22I,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.26 8950 100 1.1% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.10 8805 5374 61.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.10 8805 689 7.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.10 8805 141 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.10 8805 115 1.3% 3 +[L5F,I68-,H69-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.10 8805 113 1.3% 1 +[H69-,V70-,Y145H,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.24 8609 7553 87.7% 0 +[V213G,G339N,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.24 8609 104 1.2% 1 +[L5F,V213G,G339N,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.24 8609 93 1.1% 1 +[V213G,G339N,Q493R,I844V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.24 8609 49 0.6% 2 +[F157S,V213G,G339N,Q493R,V1264M]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.24 8609 46 0.5% 1 +[V213G,G339N,Q493R,D1153Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.9 8570 5945 69.4% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.9 8570 414 4.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9 8570 190 2.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9 8570 145 1.7% 1 +[T19R,E156G,F157-,R158-,L189F,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9 8570 91 1.1% 1 +[T19R,D138Y,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.29 8324 7366 88.5% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.29 8324 119 1.4% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.29 8324 94 1.1% 1 +[V213G,G339D,Q493R,N703H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.29 8324 34 0.4% 1 +[V213G,G339D,Q493R,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.29 8324 31 0.4% 1 +[V213G,G339D,Q493R,A845S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.113 8306 4948 59.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.113 8306 906 10.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.113 8306 81 1.0% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.113 8306 80 1.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,Q954H,N969K] AY.113 8306 51 0.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.21 8252 5819 70.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.21 8252 328 4.0% 1 +[H69-,V70-,H146Y,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.21 8252 85 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1137I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.21 8252 78 0.9% 1 +[H69-,V70-,V213G,S255F,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.21 8252 77 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] AY.4.5 8202 5144 62.7% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1259Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.5 8202 302 3.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1259Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.5 8202 113 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D796H,D950N,D1259Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.5 8202 113 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,G769V,D950N,D1259Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.5 8202 105 1.3% 1 +[L18F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1259Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.9.1 7950 4578 57.6% 0 (consensus) XBB.1.9.1 7950 163 2.1% 1 +[H146K]-[H146Q] XBB.1.9.1 7950 89 1.1% 1 -[K417N] XBB.1.9.1 7950 87 1.1% 1 +[L5F] XBB.1.9.1 7950 79 1.0% 1 -[R408S] D.2 7932 6784 85.5% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) D.2 7932 205 2.6% 1 +[V1068F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] D.2 7932 135 1.7% 1 +[T632N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] D.2 7932 79 1.0% 1 +[A930V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] D.2 7932 73 0.9% 1 +[S698L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.14 7922 5179 65.4% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.14 7922 1084 13.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.14 7922 108 1.4% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.14 7922 81 1.0% 2 +[T19R,E156G,F157-,R158-,A348S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.14 7922 49 0.6% 1 +[T19R,E156G,F157-,R158-,L452R,T547I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.2 7837 4406 56.2% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,Q675H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.119.2 7837 895 11.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q675H,P681R,D950N,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.2 7837 749 9.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q675H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.2 7837 184 2.3% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,Q675H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.2 7837 107 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,G181V,L452R,Q675H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.36 7658 5784 75.5% 0 +[I68T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.36 7658 280 3.7% 1 +[I68T,V213G,G339D,Q493R,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.36 7658 236 3.1% 1 +[I68T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.36 7658 93 1.2% 2 +[I68T,V213G,Y248H,G339D,Q493R,T791I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.36 7658 57 0.7% 1 +[I68T,T73N,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.1 7599 5988 78.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.1 7599 126 1.7% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.1 7599 106 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BF.1 7599 97 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T1009I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.1 7599 72 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.1.18 7535 4964 65.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.18 7535 451 6.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.18 7535 168 2.2% 1 +[H69-,V70-,V213G,Y248H,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.18 7535 75 1.0% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.18 7535 67 0.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] AY.129 7468 3767 50.4% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.129 7468 1906 25.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.129 7468 168 2.2% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.129 7468 146 2.0% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,Q613H,P681R,D950N,D1163Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.129 7468 38 0.5% 1 +[P9S,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.3 7467 5699 76.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.3 7467 228 3.1% 1 +[H69-,V70-,V213G,I231T,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.3 7467 144 1.9% 1 +[H69-,V70-,V213G,S254F,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.3 7467 78 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.3 7467 49 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BQ.1.1.4 7305 4506 61.7% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.4 7305 644 8.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.4 7305 141 1.9% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q675H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.4 7305 126 1.7% 1 +[H69-,V70-,W152R,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.4 7305 70 1.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A701S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.2 7223 4696 65.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.2 7223 250 3.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2 7223 176 2.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2 7223 121 1.7% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2 7223 112 1.6% 1 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V,I666V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] C.37 7201 3668 50.9% 0 +[G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,T859N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) C.37 7201 307 4.3% 1 +[G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,Q675H,T859N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.37 7201 216 3.0% 1 +[G75V,T76I,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,I714V,T859N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.37 7201 102 1.4% 13 +[T63-,W64-,F65-,H66-,A67-,H69-,V70-,S71-,G72-,T73-,N74-,G75-,T76-,R246N,S247-,Y248-,L249-,T250-,P251-,G252-,D253-,L452Q,T859N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.37 7201 95 1.3% 8 +[G75V,T76I,L452Q,T859N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.54 7162 4234 59.1% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.54 7162 1216 17.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.54 7162 72 1.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.54 7162 65 0.9% 1 +[T19R,T22I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.54 7162 51 0.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,N777S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.3.13 6982 6004 86.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.13 6982 162 2.3% 1 +[V213G,G339D,Q493R,P1143L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.13 6982 76 1.1% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.13 6982 75 1.1% 1 +[M153I,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.13 6982 35 0.5% 1 +[V213G,G339D,Q493R,D1146H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.2 6958 6253 89.9% 0 +[V213G,G339D,Q493R,I1221T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.2 6958 55 0.8% 1 +[V213G,G339D,K356R,Q493R,I1221T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.2 6958 42 0.6% 29 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.2.2 6958 30 0.4% 1 +[L176F,V213G,G339D,Q493R,I1221T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.2 6958 29 0.4% 1 +[L5F,V213G,G339D,Q493R,I1221T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.34 6900 3434 49.8% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.34 6900 1164 16.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34 6900 150 2.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,C1250F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34 6900 103 1.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,A1016V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34 6900 99 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,E484Q,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.28 6882 3428 49.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.28 6882 1572 22.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A701S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.28 6882 162 2.4% 2 +[H69-,V70-,V213G,G339D,L452R,F486V,A701S,D820E]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.28 6882 146 2.1% 2 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.28 6882 76 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.621 6853 3142 45.8% 0 +[T95I,+143T,Y144S,Y145N,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.621 6853 492 7.2% 1 +[T95I,+143T,Y144S,Y145N,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.621 6853 362 5.3% 1 +[T95I,+143T,Y144S,Y145N,R346K,E484K,D950N,M1229I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.621 6853 215 3.1% 1 +[T95I,Y144S,Y145N,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.621 6853 137 2.0% 1 +[T95I,+143T,Y144S,Y145N,R346K,E484K,T572I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BF.11 6805 4792 70.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.11 6805 110 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,Q607L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11 6805 103 1.5% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11 6805 82 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11 6805 81 1.2% 1 +[T19L,H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.3 6800 5075 74.6% 0 +[H69-,V70-,V213G,V289I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.3 6800 169 2.5% 1 +[H69-,V70-,V213G,V289I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.3 6800 111 1.6% 1 +[H69-,V70-,V213G,D215V,V289I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.3 6800 85 1.2% 1 +[L5F,H69-,V70-,V213G,V289I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.3 6800 73 1.1% 1 +[H69-,V70-,V213G,V289I,G339D,L452R,F486V,T747I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4.1 6786 5203 76.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.4.1 6786 151 2.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A701V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4.1 6786 93 1.4% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4.1 6786 63 0.9% 2 +[H69-,V70-,V213G,G339D,K444R,L452R,F486V,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4.1 6786 53 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D745G]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.234 6780 4004 59.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.234 6780 491 7.2% 1 +[P812L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.234 6780 354 5.2% 3 +[G142S,E180V,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.234 6780 180 2.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.234 6780 138 2.0% 4 +[G142S,E180V,Q677H,S940F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBF 6775 5065 74.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] (consensus) XBF 6775 87 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,G446N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,G446S] XBF 6775 65 1.0% 1 +[W64L,K147E,W152R,F157L,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] XBF 6775 47 0.7% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] XBF 6775 44 0.6% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L1224V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] B.1.258.17 6653 4995 75.1% 0 +[H69-,V70-,L189F,N439K,V772I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.258.17 6653 126 1.9% 1 +[P26L,H69-,V70-,L189F,N439K,V772I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.17 6653 65 1.0% 1 +[H69-,V70-,L189F,S256P,N439K,V772I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.17 6653 56 0.8% 1 +[H69-,V70-,L189F,N439K,V772I,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.17 6653 52 0.8% 1 +[L5F,H69-,V70-,L189F,N439K,V772I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46 6532 3516 53.8% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46 6532 587 9.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46 6532 161 2.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,K835R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46 6532 156 2.4% 1 +[T19R,E132A,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46 6532 87 1.3% 2 +[T19R,T20I,E156G,F157-,R158-,L452R,S640F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BC.1 6381 5803 90.9% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,I233V,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BC.1 6381 74 1.2% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,M153T,N211-,L212I,+214EPE,I233V,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BC.1 6381 67 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,I233V,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F,P1162L]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BC.1 6381 31 0.5% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,I233V,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BC.1 6381 24 0.4% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,I233V,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.2.8 6372 5901 92.6% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.8 6372 79 1.2% 1 +[V213G,G339D,Q493R,L938F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.8 6372 34 0.5% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.8 6372 19 0.3% 1 +[V83F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.8 6372 18 0.3% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.5 6268 4139 66.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,P1263Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.5 6268 194 3.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1263Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.5 6268 105 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,M1229T,P1263Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.5 6268 75 1.2% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,P1263Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.5 6268 68 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1263Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] B.1.438.1 6242 3695 59.2% 0 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.438.1 6242 632 10.1% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.438.1 6242 563 9.0% 1 +[A653V,Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.438.1 6242 206 3.3% 1 +[I233V,Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.438.1 6242 153 2.5% 1 +[Q613H,Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.111 6214 4038 65.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.111 6214 314 5.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.111 6214 205 3.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.111 6214 120 1.9% 1 +[T19R,T95I,E156G,F157-,R158-,N354K,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.111 6214 108 1.7% 3 +[T19R,T95I,E156G,F157-,R158-,N211-,L212I,L452R,P681R,D950N,V1094I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.9 6083 3858 63.4% 0 +[H69-,V70-,V213G,G339D,R346I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.9 6083 215 3.5% 1 +[H69-,V70-,V213G,G339D,R346I,L452R,F486V,C1247F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.9 6083 157 2.6% 1 +[H69-,V70-,V213G,G339D,R346I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.9 6083 115 1.9% 1 +[H69-,V70-,V213G,S256L,G339D,R346I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.9 6083 72 1.2% 1 +[H69-,V70-,V213G,G339D,R346I,L452R,N460H,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.12 6029 4143 68.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.12 6029 889 14.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.12 6029 72 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,E1202A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.12 6029 44 0.7% 1 +[A67V,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.12 6029 41 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,Q677H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.37 6010 5093 84.7% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.37 6010 117 1.9% 1 +[V213G,V227L,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.37 6010 78 1.3% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.37 6010 74 1.2% 1 +[V213G,G339D,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.37 6010 72 1.2% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BN.1.2 6000 4155 69.2% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.2 6000 139 2.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2 6000 81 1.4% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1.2 6000 56 0.9% 1 +[H49Y,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2 6000 50 0.8% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BA.5.1.2 5935 4635 78.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.2 5935 124 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.2 5935 74 1.2% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.2 5935 71 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,C1250Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.2 5935 64 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A570V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.12 5934 4159 70.1% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.12 5934 1099 18.5% 1 +[A222V,K1073T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.12 5934 184 3.1% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.12 5934 105 1.8% 1 +[A222V,S640F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.12 5934 28 0.5% 1 +[G181V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.3 5884 4275 72.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.3 5884 170 2.9% 1 +[H69-,V70-,G75A,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.3 5884 96 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.3 5884 70 1.2% 1 +[H69-,V70-,G75V,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.3 5884 67 1.1% 1 +[L5I,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.27 5884 4633 78.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.27 5884 124 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.27 5884 121 2.1% 2 +[H69-,V70-,H146-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.27 5884 56 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.27 5884 50 0.8% 1 +[H69-,V70-,F157L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.36 5849 2659 45.5% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36 5849 346 5.9% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36 5849 174 3.0% 1 +[I210-]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36 5849 105 1.8% 1 +[Q23R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36 5849 98 1.7% 1 +[M1050I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.4.4 5762 4063 70.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.4 5762 601 10.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S,A701V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.4 5762 137 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.4 5762 58 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.4 5762 42 0.7% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] Q.3 5756 3676 63.9% 0 +[H69-,V70-,D178H,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) Q.3 5756 1208 21.0% 1 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.3 5756 149 2.6% 2 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.3 5756 65 1.1% 2 +[H69-,V70-,M177I,D178H,A222V,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.3 5756 30 0.5% 1 +[H69-,V70-,M177I,D178H,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BA.1.16 5670 3425 60.4% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.16 5670 1260 22.2% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,V1264M]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.16 5670 77 1.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,D627G,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.16 5670 76 1.3% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.16 5670 59 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,Q613E,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] P.2 5667 3830 67.6% 0 +[E484K,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.2 5667 280 4.9% 1 +[E484K,F565L,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.2 5667 77 1.4% 1 +[L5F,E484K,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.2 5667 46 0.8% 1 +[E484K,T859I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.2 5667 32 0.6% 1 +[E484K,Q675H,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.7.14 5645 4258 75.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.14 5645 65 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S691F,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14 5645 48 0.9% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14 5645 33 0.6% 1 +[H69-,V70-,V213G,G339D,S366A,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14 5645 28 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,E1202Q,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.1.13 5617 4776 85.0% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.13 5617 172 3.1% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.13 5617 60 1.1% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.13 5617 43 0.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212-,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.13 5617 28 0.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,K417T,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] Q.1 5432 4073 75.0% 0 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) Q.1 5432 186 3.4% 1 +[H69-,V70-,A570D,T632S,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.1 5432 100 1.8% 1 +[H69-,V70-,A570D,T716I,T732I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.1 5432 81 1.5% 2 +[H69-,V70-,V367A,E484K,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.1 5432 52 1.0% 1 +[L18F,H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AY.74 5362 3978 74.2% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.74 5362 224 4.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.74 5362 172 3.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.74 5362 74 1.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.74 5362 56 1.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,A688V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.124 5334 1975 37.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.124 5334 1154 21.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.124 5334 139 2.6% 2 +[L8V,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.124 5334 83 1.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,A688V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.124 5334 83 1.6% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.10 5330 2775 52.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.10 5330 1177 22.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.10 5330 94 1.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.10 5330 92 1.7% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.10 5330 37 0.7% 1 +[H69-,V70-,K147I,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] EG.5.1 5306 3515 66.2% 0 +[Q52H,F456L] (consensus) EG.5.1 5306 125 2.4% 1 +[Q52H,H146K,F456L]-[H146Q] EG.5.1 5306 79 1.5% 1 +[Q52H,L455F,F456L] EG.5.1 5306 63 1.2% 1 +[Q52H,L176F,F456L] EG.5.1 5306 61 1.1% 1 +[T19L,Q52H,F456L]-[T19I] AY.7.1 5233 3078 58.8% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.7.1 5233 661 12.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A688V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7.1 5233 635 12.1% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7.1 5233 52 1.0% 2 +[T19R,E156G,F157-,R158-,A263V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7.1 5233 50 1.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.10.1 5232 3981 76.1% 0 +[V213G,G339D,Q493R,G798D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.10.1 5232 174 3.3% 2 +[T19L,V159I,V213G,G339D,Q493R,G798D]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.10.1 5232 98 1.9% 1 +[V213G,G339D,Q493R,G798D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.10.1 5232 95 1.8% 1 +[V213G,G339D,Q493R,Q677H,G798D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.10.1 5232 58 1.1% 1 +[L5F,V213G,G339D,Q493R,G798D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.525 5225 3130 59.9% 0 +[Q52R,A67V,H69-,V70-,E484K,Q677H,F888L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.525 5225 188 3.6% 1 +[Q52R,A67V,H69-,V70-,E484K,Q677H,D839Y,F888L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.525 5225 91 1.7% 1 +[Q52R,A67V,H69-,V70-,K150N,E484K,Q677H,F888L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.525 5225 73 1.4% 1 +[A67V,H69-,V70-,E484K,Q677H,F888L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.525 5225 68 1.3% 1 +[Q52R,A67V,H69-,V70-,G181A,E484K,Q677H,F888L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.65 5218 3882 74.4% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.65 5218 213 4.1% 1 +[V213G,G339N,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.65 5218 86 1.6% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.65 5218 71 1.4% 1 +[V213G,G339D,Q493R,E1195G]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.65 5218 64 1.2% 1 +[V213G,S255F,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.56 5187 3754 72.4% 0 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.56 5187 260 5.0% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.56 5187 182 3.5% 1 +[V213G,R214L,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.56 5187 99 1.9% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.56 5187 52 1.0% 2 +[V213G,G339D,L452M,Q493R]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] AY.43.6 5154 4619 89.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.6 5154 69 1.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,R1091H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.6 5154 36 0.7% 1 +[T19R,D80Y,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.6 5154 28 0.5% 1 +[T19R,E156G,F157-,R158-,T274I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.6 5154 26 0.5% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.12 5132 4132 80.5% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.12 5132 98 1.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.12 5132 42 0.8% 1 +[H69-,V70-,V213G,S254F,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.12 5132 40 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S,N679K] BQ.1.12 5132 21 0.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.1.3 5102 2965 58.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.3 5102 596 11.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.3 5102 220 4.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.3 5102 90 1.8% 1 +[H69-,V70-,H146-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.3 5102 85 1.7% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.1.14 5017 3917 78.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.14 5017 123 2.5% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.14 5017 92 1.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] BA.1.14 5017 63 1.3% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.14 5017 55 1.1% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.5.3.1 5009 3003 60.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.3.1 5009 169 3.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.1 5009 153 3.1% 2 +[A67V,H69-,V70-,V213G,G339D,L452R,F486V,A829T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.1 5009 134 2.7% 3 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.3.1 5009 101 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A829T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.16.1 5000 3440 68.8% 0 +[E180V,T478R,T547I]-[T478K] (consensus) XBB.1.16.1 5000 99 2.0% 1 +[H146K,E180V,T478R,T547I]-[H146Q,T478K] XBB.1.16.1 5000 51 1.0% 1 +[E180V,T478R,P521S,T547I]-[T478K] XBB.1.16.1 5000 44 0.9% 1 +[E180V,T478R,T547I]-[K417N,T478K] XBB.1.16.1 5000 42 0.8% 1 +[E180V,T478R,T547I,E554K]-[T478K] P.1.17 4999 3660 73.2% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.17 4999 160 3.2% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,D936Y,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17 4999 95 1.9% 1 +[L18F,T20N,P26S,D138Y,R190S,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17 4999 66 1.3% 1 +[L18F,T20N,P26S,G75V,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17 4999 61 1.2% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F,E1258D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.24 4971 4046 81.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.24 4971 82 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A570V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.24 4971 78 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.24 4971 41 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.24 4971 38 0.8% 1 +[H69-,V70-,G181V,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.60 4965 3175 63.9% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.60 4965 180 3.6% 1 +[L5F,L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.60 4965 173 3.5% 1 +[L18F,A222V,R1091H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.60 4965 124 2.5% 2 +[L18F,A222V,K558N,V687I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.60 4965 76 1.5% 1 +[L18F,A222V,I1232V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.369 4962 1968 39.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.369 4962 608 12.3% 1 +[E780Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.369 4962 309 6.2% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.369 4962 266 5.4% 1 +[H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.369 4962 154 3.1% 1 +[A688V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B 4918 3987 81.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B 4918 127 2.6% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B 4918 37 0.8% 1 +[H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B 4918 17 0.3% 1 +[S247R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B 4918 14 0.3% 5 +[T19R,E156G,F157-,R158-,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.2.6 4874 3331 68.3% 0 +[D253G,F486S]-[G252V,F486P] (consensus) XBB.2.6 4874 281 5.8% 1 +[D253G,F486S]-[G252V,R408S,F486P] XBB.2.6 4874 82 1.7% 1 +[H146K,D253G,F486S]-[H146Q,G252V,F486P] XBB.2.6 4874 70 1.4% 1 +[D253G,F486S]-[Q183E,G252V,F486P] XBB.2.6 4874 50 1.0% 1 +[N148T,D253G,F486S]-[G252V,F486P] B.1.240 4868 2541 52.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.240 4868 610 12.5% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.240 4868 275 5.6% 1 +[P809S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.240 4868 158 3.2% 1 +[L54F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.240 4868 101 2.1% 1 +[A575S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.86 4757 2777 58.4% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.86 4757 604 12.7% 1 +[L18F,A222V,D1163Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.86 4757 211 4.4% 2 +[L18F,A222V,T547I,D1163Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.86 4757 149 3.1% 1 +[L18F,A222V,Q779K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.86 4757 119 2.5% 1 +[L18F,A222V,A1070S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CH.1.1.1 4736 3426 72.3% 0 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.1 4736 55 1.2% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.1 4736 51 1.1% 1 +[K147E,W152R,F157L,N185D,F186L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.1 4736 33 0.7% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S,Q675K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.1 4736 32 0.7% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.12 4728 3797 80.3% 0 +[V213G,G339D,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.12 4728 74 1.6% 1 +[G75V,V213G,G339D,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12 4728 69 1.5% 1 +[V213G,G339D,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.12 4728 58 1.2% 1 +[L5F,V213G,G339D,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12 4728 55 1.2% 1 +[V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.9.2 4727 2564 54.2% 0 (consensus) XBB.1.9.2 4727 119 2.5% 1 +[H146K]-[H146Q] XBB.1.9.2 4727 71 1.5% 2 +[V70A,C1247S] XBB.1.9.2 4727 64 1.4% 1 +[I794T] XBB.1.9.2 4727 56 1.2% 1 -[K417N] BF.14 4676 3420 73.1% 0 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.14 4676 95 2.0% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V,D1118Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.14 4676 57 1.2% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V,I742V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.14 4676 53 1.1% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.14 4676 47 1.0% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.39.1.1 4667 3539 75.8% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.39.1.1 4667 377 8.1% 1 +[T19R,T95I,E156G,F157-,R158-,G219D,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.1 4667 172 3.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,R765H,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.1 4667 113 2.4% 1 +[T19R,R21T,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.1 4667 85 1.8% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,N481K,P681R,R765H,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BR.2.1 4617 3722 80.6% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BR.2.1 4617 34 0.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I,N556K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BR.2.1 4617 33 0.7% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BR.2.1 4617 31 0.7% 1 +[K147E,W152R,F157L,I210V,L212S,V213G,G257S,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BR.2.1 4617 26 0.6% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I,Q1208H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] AY.85 4608 1335 29.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.85 4608 1117 24.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.85 4608 135 2.9% 2 +[T19R,T95I,E156G,F157-,R158-,F306L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.85 4608 128 2.8% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,S477I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.85 4608 99 2.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,S698A,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.14 4570 3319 72.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.14 4570 140 3.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.14 4570 79 1.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E1258D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.14 4570 49 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.14 4570 42 0.9% 1 +[H69-,V70-,K147N,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.1.222 4560 1876 41.1% 0 +[T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.222 4560 225 4.9% 2 +[T732A,A1078S,V1228I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.222 4560 172 3.8% 2 +[T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.222 4560 166 3.6% 1 +[G257S,T732A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.222 4560 160 3.5% 1 +[T732A,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1 4485 1847 41.2% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.34.1 4485 594 13.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,V1133I,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1 4485 488 10.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1 4485 218 4.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,V1264A,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1 4485 86 1.9% 1 +[T19R,T95I,E156G,F157-,R158-,P174S,L452R,Q677H,P681R,D950N,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.1 4453 3607 81.0% 0 +[T19R,T95I,E156G,F157-,R158-,Q173H,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.29.1 4453 151 3.4% 1 +[T19R,T95I,E156G,F157-,R158-,Q173H,L452R,P681R,D950N,M1237I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.1 4453 94 2.1% 1 +[T19R,T95I,E156G,F157-,R158-,Q173H,L452R,T553I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.1 4453 82 1.8% 1 +[T19R,T95I,E156G,F157-,R158-,Q173H,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.1 4453 47 1.1% 1 +[T19R,T95I,E156G,F157-,R158-,Q173H,L176F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.4 4444 2626 59.1% 0 (consensus) FL.4 4444 138 3.1% 1 +[D1259Y] FL.4 4444 84 1.9% 1 +[H146K]-[H146Q] FL.4 4444 79 1.8% 1 +[T478R]-[T478K] FL.4 4444 60 1.4% 1 +[R1014K] BF.8 4409 3425 77.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.8 4409 100 2.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.8 4409 58 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.8 4409 54 1.2% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.8 4409 36 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A701V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4 4334 3344 77.2% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.4 4334 71 1.6% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4 4334 65 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T827I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.4 4334 48 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7.4 4334 32 0.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1263L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.81 4323 3071 71.0% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.81 4323 111 2.6% 1 +[A222V,T240I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.81 4323 110 2.5% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.81 4323 78 1.8% 1 +[A222V,D839Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.81 4323 53 1.2% 1 +[A222V,V227L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DY.2 4301 3314 77.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) DY.2 4301 40 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D1163V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.2 4301 35 0.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.2 4301 33 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.2 4301 20 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.1.2 4294 3543 82.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.1.2 4294 94 2.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.1.1.2 4294 50 1.2% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.1.2 4294 36 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,P681H] BE.1.1.2 4294 35 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] B.1.1.37 4213 2701 64.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.37 4213 326 7.7% 1 +[V622F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.37 4213 252 6.0% 4 +[L5F,A222V,D574Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.37 4213 216 5.1% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.37 4213 58 1.4% 1 +[P330S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.7 4199 3272 77.9% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.7 4199 216 5.1% 1 +[L18F,A222V,Q613H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.7 4199 151 3.6% 1 +[L18F,N185S,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.7 4199 103 2.5% 1 +[L18F,A222V,S256L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.7 4199 60 1.4% 1 +[L18F,A67S,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.8 4198 3110 74.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.8 4198 79 1.9% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.8 4198 68 1.6% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.8 4198 57 1.4% 1 +[H69-,V70-,V213G,D215Y,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.8 4198 53 1.3% 2 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V,S940F]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.5 4193 2095 50.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.5 4193 590 14.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.5 4193 151 3.6% 1 +[H69-,V70-,S98F,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.5 4193 131 3.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.5 4193 73 1.7% 1 +[H69-,V70-,H146-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BF.7.5 4193 2561 61.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.5 4193 690 16.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.5 4193 49 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A845S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.5 4193 43 1.0% 2 +[V6I,H69-,V70-,V213G,G339D,L452R,F486V,T547I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.5 4193 38 0.9% 5 +[H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.4.2.3 4168 1673 40.1% 0 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.2.3 4168 1006 24.1% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,L1049I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.3 4168 256 6.1% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.3 4168 161 3.9% 2 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,D950N,L1049I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.3 4168 42 1.0% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,L452R,P681R,P812L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.1 4102 2328 56.8% 0 +[Q613H] (consensus) EG.1 4102 300 7.3% 1 +[Q613H,G1124V] EG.1 4102 60 1.5% 1 +[H146K,Q613H]-[H146Q] EG.1 4102 44 1.1% 2 +[T29I,Q613H,A706V] EG.1 4102 37 0.9% 1 +[T29I,Q613H] BQ.1.11 4070 2568 63.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.11 4070 322 7.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.11 4070 288 7.1% 1 +[H69-,V70-,W152L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.11 4070 117 2.9% 1 +[H69-,V70-,H146-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.11 4070 46 1.1% 1 +[H69-,V70-,K147E,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.1.5 4042 2569 63.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.5 4042 388 9.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.5 4042 58 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.5 4042 34 0.8% 1 +[H69-,V70-,H146-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.5 4042 32 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BF.7.15 4008 3288 82.0% 0 +[H69-,V70-,V213G,G257D,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.15 4008 99 2.5% 1 +[L8F,H69-,V70-,V213G,G257D,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.15 4008 59 1.5% 1 +[H69-,V70-,V213G,G257D,G339D,L452R,F486V,L752F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.15 4008 47 1.2% 1 +[H69-,V70-,V213G,G257D,G339D,L452R,F486V,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.15 4008 41 1.0% 1 +[L5F,H69-,V70-,V213G,G257D,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] FU.1 3990 3108 77.9% 0 +[E180V,T478R,T547I]-[T478K] (consensus) FU.1 3990 53 1.3% 1 +[H146K,E180V,T478R,T547I]-[H146Q,T478K] FU.1 3990 39 1.0% 1 +[E180V,T478R,T547I]-[Y144-,T478K] FU.1 3990 26 0.7% 1 +[E180V,T478R,T547I,K1266R]-[T478K] FU.1 3990 21 0.5% 1 +[E180V,T478R,Q493L,T547I]-[T478K] AY.46.4 3985 2313 58.0% 0 +[T19R,E156G,F157-,R158-,L452R,E661D,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46.4 3985 597 15.0% 1 +[T19R,E156G,F157-,R158-,L452R,E661D,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.4 3985 299 7.5% 1 +[T19R,E156G,F157-,R158-,A222S,L452R,E661D,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.4 3985 116 2.9% 2 +[T19R,E156G,F157-,R158-,A222S,L452R,E661D,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.4 3985 26 0.7% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,E661D,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.23 3976 3009 75.7% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.23 3976 49 1.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.23 3976 35 0.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A1078S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.23 3976 34 0.9% 1 +[H69-,V70-,V213G,Q271K,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.23 3976 28 0.7% 1 +[H69-,V70-,S151T,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.177.4 3921 3390 86.5% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.4 3921 77 2.0% 1 +[A222V,D253G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.4 3921 38 1.0% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.4 3921 18 0.5% 1 +[A222V,P1263T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.4 3921 14 0.4% 1 +[R21G,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AD.2 3849 3335 86.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AD.2 3849 93 2.4% 1 +[S71P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AD.2 3849 44 1.1% 1 +[S255F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AD.2 3849 21 0.5% 1 +[A626V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AD.2 3849 21 0.5% 1 +[L938F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.7 3828 2314 60.4% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] (consensus) P.1.7 3828 132 3.4% 1 +[L18F,T20N,P26S,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.7 3828 70 1.8% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,E780A,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.7 3828 61 1.6% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,Q613H,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.7 3828 60 1.6% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,E654Q,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] XBB.1.5.13 3822 2748 71.9% 0 (consensus) XBB.1.5.13 3822 50 1.3% 1 +[H146K]-[H146Q] XBB.1.5.13 3822 48 1.3% 1 -[K417N] XBB.1.5.13 3822 34 0.9% 1 +[P1162L] XBB.1.5.13 3822 22 0.6% 1 +[L216F] B.1.1.28 3799 1986 52.3% 0 +[V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.28 3799 153 4.0% 2 +[M153T,S689I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.28 3799 61 1.6% 3 +[M153T,N658T,S689I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.28 3799 57 1.5% 2 +[A222V,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.1.28 3799 55 1.4% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.4.2 3795 3049 80.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.2 3795 102 2.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.2 3795 40 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.4.2 3795 39 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1164I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.2 3795 24 0.6% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.21 3769 3184 84.5% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.21 3769 116 3.1% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.21 3769 37 1.0% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214GAR,D215N,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.21 3769 30 0.8% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.21 3769 29 0.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.5.1.25 3747 2626 70.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.25 3747 155 4.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.25 3747 131 3.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.25 3747 94 2.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.25 3747 51 1.4% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.34 3741 2509 67.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.34 3741 126 3.4% 1 +[H69-,V70-,V213G,D215E,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.34 3741 118 3.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.34 3741 53 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.34 3741 52 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.8 3724 2910 78.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.8 3724 143 3.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162L,Q1201H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.8 3724 76 2.0% 1 +[H69-,V70-,W152R,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.8 3724 34 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.8 3724 34 0.9% 1 +[R21T,H69-,V70-,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13 3720 2233 60.0% 0 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.13 3720 898 24.1% 1 +[V213G,G339D,L452M,Q493R,D936Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13 3720 70 1.9% 2 +[V213G,S255F,G339D,L452M,Q493R,D936Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13 3720 43 1.2% 1 +[L5F,V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13 3720 35 0.9% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.28 3704 2463 66.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.28 3704 113 3.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.28 3704 77 2.1% 1 +[H69-,V70-,V213G,G339D,S359N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.28 3704 56 1.5% 1 +[H69-,V70-,G184S,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.28 3704 47 1.3% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.122.5 3683 1779 48.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122.5 3683 1034 28.1% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.5 3683 124 3.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.5 3683 117 3.2% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.5 3683 85 2.3% 2 +[T19R,E156G,F157-,R158-,S255F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.8 3665 3027 82.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.8 3665 94 2.6% 1 +[T19R,T95I,E156G,F157-,R158-,G181R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.8 3665 34 0.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,A647S,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.8 3665 32 0.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,T961M]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.8 3665 31 0.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,A1020V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.22 3648 2775 76.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.22 3648 68 1.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.2.22 3648 60 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,Q677H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.22 3648 50 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.22 3648 45 1.2% 1 +[H69-,V70-,V213G,T250A,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.112 3606 1358 37.7% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.112 3606 577 16.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.112 3606 134 3.7% 1 +[T19R,T95I,E156G,F157-,R158-,S254F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.112 3606 60 1.7% 2 +[T19R,T95I,E156G,F157-,R158-,S254F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.112 3606 51 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,E1207D]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BD.1 3568 3079 86.3% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,Q628K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BD.1 3568 43 1.2% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,Q628K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BD.1 3568 41 1.1% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,Q628K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BD.1 3568 39 1.1% 1 +[A67V,H69-,V70-,T95I,I105L,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,Q628K,A701V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BD.1 3568 32 0.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,Q628K,A701V,N856K,L981F,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.5.2.26 3565 2373 66.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.26 3565 127 3.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.26 3565 123 3.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.26 3565 55 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.26 3565 43 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] AY.25.3 3540 2307 65.2% 0 +[T19R,E156G,F157-,R158-,S221L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.25.3 3540 664 18.8% 1 +[T19R,E156G,F157-,R158-,L176F,S221L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25.3 3540 146 4.1% 1 +[T19R,E156G,F157-,R158-,S221L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25.3 3540 45 1.3% 1 +[L5F,T19R,E156G,F157-,R158-,S221L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.25.3 3540 24 0.7% 1 +[T19R,E156G,F157-,R158-,S221L,L452R,P681R,S704L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DY.4 3537 2769 78.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) DY.4 3537 75 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] DY.4 3537 30 0.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.4 3537 29 0.8% 1 +[Q14H,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.4 3537 19 0.5% 1 +[H69-,V70-,V213G,T307I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] A.1 3522 3101 88.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) A.1 3522 54 1.5% 1 +[V483A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.1 3522 29 0.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.1 3522 25 0.7% 1 +[L18F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.1 3522 17 0.5% 1 +[A623V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.13 3515 1969 56.0% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.13 3515 415 11.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.13 3515 307 8.7% 1 +[T19R,E156G,F157-,R158-,I210-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.13 3515 81 2.3% 2 +[T19R,E156G,F157-,R158-,I210-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.13 3515 48 1.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,S940F,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.114 3501 1954 55.8% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.114 3501 625 17.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.114 3501 46 1.3% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.114 3501 37 1.1% 2 +[S12F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.114 3501 30 0.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,S640F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1 3473 2248 64.7% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1 3473 169 4.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,T961M]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1 3473 39 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1 3473 38 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,S929T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1 3473 27 0.8% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,E1111Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] AY.93 3438 2729 79.4% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.93 3438 62 1.8% 1 +[T19R,E156G,F157-,R158-,G446V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.93 3438 60 1.7% 1 +[T19R,E156G,F157-,R158-,L452R,T547I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.93 3438 36 1.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,I818V,D950N,G1219C]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.93 3438 29 0.8% 1 +[T19R,E156G,F157-,R158-,L452R,A623S,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.1 3370 1976 58.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.1 3370 187 5.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.1 3370 66 2.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.1 3370 58 1.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E1144Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.1 3370 51 1.5% 1 +[H69-,V70-,V213G,G339D,K444T,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.595 3349 2246 67.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.595 3349 117 3.5% 1 +[A1087G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.595 3349 109 3.3% 1 +[D178G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.595 3349 54 1.6% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.595 3349 50 1.5% 1 +[A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.4.6.5 3304 2666 80.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.6.5 3304 38 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.6.5 3304 33 1.0% 1 +[W64L,H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.5 3304 30 0.9% 1 +[H69-,V70-,V213G,T250I,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.5 3304 25 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S,Q675H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.497 3287 2681 81.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.497 3287 77 2.3% 2 +[Q52H,N556K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.497 3287 50 1.5% 1 +[I1169F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.497 3287 50 1.5% 1 +[A684T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.497 3287 26 0.8% 1 +[T20N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.75.2 3264 2098 64.3% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BA.2.75.2 3264 45 1.4% 4 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,D1199N]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.75.2 3264 36 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,D1199N]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.75.2 3264 35 1.1% 1 +[K147E,W152R,F157L,I210V,G257S,F486S,D1199N]-[V83A,Y144-,H146Q,Q183E,G252V,L368I,V445P,F486P,F490S] BA.2.75.2 3264 32 1.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,L1186I,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] XBB.2.3 3263 1659 50.8% 0 +[D253G,P521S]-[G252V] (consensus) XBB.2.3 3263 110 3.4% 1 +[G184V,D253G,P521S]-[G252V] XBB.2.3 3263 97 3.0% 1 +[I210-,D253G,P521S]-[G252V] XBB.2.3 3263 43 1.3% 1 +[H146K,D253G,P521S]-[H146Q,G252V] XBB.2.3 3263 43 1.3% 1 +[D253G,S256T,P521S]-[G252V] AY.7 3206 2519 78.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.7 3206 92 2.9% 1 +[T19R,E156G,F157-,R158-,Y265C,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7 3206 78 2.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,T747I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7 3206 55 1.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7 3206 45 1.4% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,L1224S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,Q954H,N969K] BF.4 3205 2458 76.7% 0 +[H69-,V70-,V213G,T259A,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.4 3205 70 2.2% 1 +[H69-,V70-,V213G,T259A,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.4 3205 61 1.9% 2 +[T19L,H69-,V70-,V213G,T259A,G339D,L452R,F486V,D1153N]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.4 3205 42 1.3% 1 +[H69-,V70-,V213G,T259A,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.4 3205 37 1.2% 1 +[H69-,V70-,V213G,T259A,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.38 3202 1698 53.0% 0 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.38 3202 214 6.7% 1 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.38 3202 110 3.4% 1 +[V213G,G339D,K417T,Q493R]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.38 3202 101 3.2% 4 +[V213G,G339D,K417T,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.38 3202 99 3.1% 1 +[V213G,G339D,K417T,K444N,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BQ.1.3.2 3178 2334 73.4% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.3.2 3178 122 3.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q,V1133A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3.2 3178 52 1.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3.2 3178 42 1.3% 1 +[H69-,V70-,W152R,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3.2 3178 20 0.6% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q,A701V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] P.1.15 3178 2208 69.5% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.15 3178 124 3.9% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,G1085E,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.15 3178 35 1.1% 1 +[L18F,T20N,P26S,D138Y,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.15 3178 28 0.9% 1 +[L5F,L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.15 3178 23 0.7% 2 +[L18F,T20N,P25S,P26S,D138Y,R190S,K417T,E484K,T1027I,G1085E,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.7 3177 2569 80.9% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.7 3177 101 3.2% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.7 3177 82 2.6% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.7 3177 62 2.0% 1 +[V213G,G339D,Q493R,A1020V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.7 3177 31 1.0% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.3.20 3142 1997 63.6% 0 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] (consensus) BA.2.3.20 3142 43 1.4% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,T478E,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,T478K,E484A,F486P,F490S] BA.2.3.20 3142 42 1.3% 1 +[M153T,N164K,M177I,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] BA.2.3.20 3142 37 1.2% 1 +[M153T,N164K,H245N,G257D,G339D,K444R,N450D,L452M,E484R]-[V83A,Y144-,H146Q,Q183E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] BA.2.3.20 3142 33 1.1% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R,G485D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] AY.101 3141 1179 37.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.101 3141 760 24.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.101 3141 160 5.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.101 3141 85 2.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.101 3141 38 1.2% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.7 3103 2144 69.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.7 3103 198 6.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.7 3103 43 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,V1230M]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.7 3103 25 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T1077A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.7 3103 20 0.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,F643L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.1.1.12 3066 2689 87.7% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.12 3066 60 2.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,S704L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.12 3066 53 1.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,T299I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.12 3066 34 1.1% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,P272L,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.12 3066 21 0.7% 1 +[L54F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] XBB.1.5.7 3058 2165 70.8% 0 (consensus) XBB.1.5.7 3058 50 1.6% 1 -[K417N] XBB.1.5.7 3058 46 1.5% 1 +[H146K]-[H146Q] XBB.1.5.7 3058 31 1.0% 2 -[R408S,S477N] XBB.1.5.7 3058 29 0.9% 2 +[H146K,D936H]-[H146Q] BA.5.1.6 3048 1884 61.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.6 3048 178 5.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.6 3048 159 5.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.6 3048 119 3.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.6 3048 56 1.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.33 3006 1985 66.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.33 3006 57 1.9% 1 +[Q23K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.33 3006 32 1.1% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.33 3006 23 0.8% 1 +[V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.33 3006 22 0.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.2 2988 2076 69.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.2 2988 184 6.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G1219C]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.2 2988 114 3.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.2 2988 35 1.2% 1 +[H69-,V70-,V213G,G339D,R346I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.2 2988 24 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.1.16 2954 2630 89.0% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.16 2954 18 0.6% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.16 2954 16 0.5% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.16 2954 16 0.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.1.16 2954 14 0.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,L452M,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] XBB.1.16.6 2921 2018 69.1% 0 +[E180V,F456L,T478R]-[T478K] (consensus) XBB.1.16.6 2921 150 5.1% 1 +[E180V,L455F,F456L,T478R]-[T478K] XBB.1.16.6 2921 127 4.3% 1 +[H146K,E180V,F456L,T478R]-[H146Q,T478K] XBB.1.16.6 2921 44 1.5% 1 +[E180V,F456L,T478R,Q675H]-[T478K] XBB.1.16.6 2921 41 1.4% 1 +[E180V,F456L,T478R]-[K417N,T478K] B.1.311 2921 1121 38.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.311 2921 470 16.1% 1 +[G72R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.311 2921 308 10.5% 1 +[A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.311 2921 200 6.8% 1 +[S12F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.311 2921 116 4.0% 2 +[D88H,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.70 2888 1800 62.3% 0 +[T19R,R21T,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.70 2888 602 20.8% 1 +[T19R,R21T,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.70 2888 25 0.9% 2 +[T19R,R21T,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.70 2888 22 0.8% 1 +[T19R,R21T,E156G,F157-,R158-,A222V,L452R,P681R,D950N,T1117I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.70 2888 22 0.8% 2 +[T19R,R21T,E156G,F157-,R158-,A222V,L452R,P681R,D950N,D1153Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.8 2886 1650 57.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.8 2886 271 9.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.8 2886 166 5.8% 1 +[L18F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.8 2886 132 4.6% 1 +[T19R,E156G,F157-,R158-,R214L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.8 2886 41 1.4% 1 +[T19R,E156G,F157-,R158-,T323I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.15 2857 1927 67.4% 0 (consensus) XBB.1.5.15 2857 62 2.2% 1 +[H146K]-[H146Q] XBB.1.5.15 2857 46 1.6% 1 -[K417N] XBB.1.5.15 2857 39 1.4% 1 +[G181V] XBB.1.5.15 2857 34 1.2% 2 +[N185D,F456L] P.1.10 2851 2139 75.0% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.10 2851 225 7.9% 1 +[L18F,T20N,P26S,D138Y,Q183H,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.10 2851 41 1.4% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N606K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.10 2851 32 1.1% 1 +[L18F,T20N,P26S,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.10 2851 24 0.8% 1 +[L18F,T20N,P26S,D138Y,R190S,T323I,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.30 2839 1018 35.9% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.30 2839 839 29.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.30 2839 178 6.3% 4 +[T19R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.30 2839 34 1.2% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,T1117I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.30 2839 28 1.0% 3 +[T19R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.575 2827 2016 71.3% 0 +[S494P,T716I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.575 2827 155 5.5% 1 +[S494P,T716I,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.575 2827 49 1.7% 1 +[W152R,S494P,T716I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.575 2827 42 1.5% 1 +[L5F,S494P,T716I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.575 2827 40 1.4% 2 +[S494P,T716I,S735L,A893S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BA.5.2.48 2817 2247 79.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.48 2817 32 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A570S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.48 2817 15 0.5% 1 +[H69-,V70-,V213G,L277F,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.48 2817 10 0.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.48 2817 10 0.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.57 2808 2063 73.5% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.57 2808 297 10.6% 2 +[P26S,A222V,A688V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.57 2808 67 2.4% 1 +[A222V,A688V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.57 2808 22 0.8% 1 +[A222V,A575S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.57 2808 20 0.7% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.1 2802 1513 54.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.120.1 2802 477 17.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.1 2802 78 2.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1162L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.1 2802 39 1.4% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1162L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.1 2802 35 1.2% 1 +[T19R,L54F,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.18 2787 2112 75.8% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.18 2787 46 1.7% 1 +[H69-,V70-,V213G,H245Y,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.18 2787 45 1.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.18 2787 40 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S939F]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.18 2787 26 0.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,F486P,F490S] BA.2.9.3 2782 2148 77.2% 0 +[W64R,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.9.3 2782 154 5.5% 1 +[W64R,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.9.3 2782 47 1.7% 1 +[W64R,M153T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.3 2782 24 0.9% 1 +[W64R,V213G,G339D,Q493R]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.3 2782 18 0.6% 1 +[W64R,V213G,G339D,Q493R,D1259H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.27 2774 1654 59.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.27 2774 290 10.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.27 2774 46 1.7% 1 +[H69-,V70-,K147I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.27 2774 39 1.4% 1 +[H69-,V70-,K97T,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.27 2774 34 1.2% 2 +[H69-,V70-,H146-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.13.1 2768 2425 87.6% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.13.1 2768 64 2.3% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,Q1201K]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.13.1 2768 49 1.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.13.1 2768 28 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] BA.1.13.1 2768 8 0.3% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,S1021F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] B.1.1.70 2760 1150 41.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.70 2760 698 25.3% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.70 2760 71 2.6% 2 +[H69-,V70-]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.70 2760 68 2.5% 1 +[A1078V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.70 2760 45 1.6% 2 +[L5F,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.5.1 2759 2211 80.1% 0 +[H69-,V70-,T76I,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.5.1 2759 52 1.9% 1 +[H69-,V70-,T76I,V213G,G339D,N450D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.1 2759 34 1.2% 1 +[L5F,H69-,V70-,T76I,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.1 2759 31 1.1% 1 +[H69-,V70-,T76I,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.5.1 2759 22 0.8% 1 +[H69-,V70-,T76I,V213G,S255F,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.318 2757 1860 67.5% 0 +[T95I,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.318 2757 112 4.1% 1 +[T95I,E484K,D796H,Q1208H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.318 2757 60 2.2% 1 +[T95I,E484K,D796H,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.318 2757 40 1.5% 1 +[T95I,E484K,N501T,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.318 2757 32 1.2% 2 +[T95I,E484K,D796H,A1078S,Q1208H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BQ.1.1.69 2702 1815 67.2% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.69 2702 212 7.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.69 2702 46 1.7% 1 +[H69-,V70-,V213G,G252D,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.69 2702 32 1.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.69 2702 24 0.9% 2 +[H69-,V70-,V213G,S254F,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.2.76 2696 1954 72.5% 0 +[V213G,Y248N,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.76 2696 135 5.0% 1 +[V213G,Y248N,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.76 2696 52 1.9% 4 +[V213G,Y248N,G339D,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.76 2696 38 1.4% 1 +[L5F,V213G,Y248N,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.76 2696 24 0.9% 1 +[V213G,Y248N,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BE.9 2692 2053 76.3% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BE.9 2692 57 2.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BE.9 2692 44 1.6% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BE.9 2692 39 1.4% 1 +[H69-,V70-,F157S,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BE.9 2692 31 1.2% 1 +[H69-,V70-,V213G,S255F,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.35 2676 1964 73.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.35 2676 57 2.1% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.35 2676 34 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.35 2676 30 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,N460K,F486P,F490S] BA.5.2.35 2676 25 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.110 2673 1529 57.2% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.110 2673 589 22.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.110 2673 44 1.6% 1 +[T19R,T95I,K97R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.110 2673 36 1.3% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.110 2673 31 1.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,A623V,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.13 2644 1300 49.2% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.13 2644 701 26.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.13 2644 68 2.6% 1 +[H69-,V70-,G184S,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.13 2644 53 2.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T618K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.13 2644 37 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,L1244F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] AY.4.3 2604 742 28.5% 0 +[T19R,P26S,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.3 2604 493 18.9% 1 +[T19R,P26S,L54F,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.3 2604 359 13.8% 3 +[T19R,P26S,L54F,T95I,E156G,F157-,R158-,A262S,L452R,P681R,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.3 2604 146 5.6% 2 +[T19R,P26S,L54F,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.3 2604 99 3.8% 1 +[T19R,P26S,T95I,E156G,F157-,R158-,M177I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.4 2601 2272 87.4% 0 +[S12F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.39.1.4 2601 24 0.9% 1 +[S12F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.4 2601 22 0.8% 1 +[S12F,T19R,T95I,E156G,F157-,R158-,A222S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.4 2601 19 0.7% 1 +[S12F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D936Y,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.4 2601 19 0.7% 1 +[S12F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,N856K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116.1 2594 1459 56.2% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.116.1 2594 302 11.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116.1 2594 81 3.1% 1 +[S12F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116.1 2594 65 2.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1118Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116.1 2594 51 2.0% 1 +[T19R,T95I,E156G,F157-,R158-,F306L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] ED.1 2558 2228 87.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) ED.1 2558 43 1.7% 1 +[H69-,V70-,T208M,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.1 2558 17 0.7% 1 +[H69-,V70-,V213G,L242F,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.1 2558 13 0.5% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.1 2558 12 0.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T747I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.4.1.1 2554 1611 63.1% 0 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,I670V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.1.1 2554 429 16.8% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.1 2554 45 1.8% 4 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.1 2554 43 1.7% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,I670V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.1.1 2554 37 1.4% 1 +[V3G,H69-,V70-,G181V,V213G,G339D,L452R,F486V,I670V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.6 2553 1785 69.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.6 2553 40 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S691P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.6 2553 36 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7.6 2553 34 1.3% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.6 2553 25 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,C1247F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.13 2548 1926 75.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.13 2548 49 1.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.13 2548 39 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S1147L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.13 2548 29 1.1% 1 +[H69-,V70-,V213G,T250I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.13 2548 27 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T791I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.121.1 2547 1457 57.2% 0 +[T19R,T29I,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.121.1 2547 168 6.6% 1 +[T19R,T29I,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.121.1 2547 118 4.6% 1 +[V6F,T19R,T29I,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.121.1 2547 103 4.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.121.1 2547 42 1.6% 2 +[T19R,T29I,T95I,E156G,F157-,R158-,L452R,P681R,D950N,N1158D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.1.5.1 2536 1792 70.7% 0 +[F456L,T478R,A701V]-[T478K] (consensus) FL.1.5.1 2536 79 3.1% 1 +[F456L,T478R,A701V]-[K417N,T478K] FL.1.5.1 2536 41 1.6% 1 +[H146K,F456L,T478R,A701V]-[H146Q,T478K] FL.1.5.1 2536 20 0.8% 1 +[F456L,T478R,P621S,A701V]-[T478K] FL.1.5.1 2536 18 0.7% 1 +[L5F,F456L,T478R,A701V]-[T478K] BA.5.3 2510 1323 52.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.3 2510 259 10.3% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3 2510 204 8.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S1170F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3 2510 111 4.4% 1 +[H69-,V70-,V213G,G261C,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3 2510 75 3.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] AY.39.1.2 2481 1363 54.9% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.39.1.2 2481 472 19.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.2 2481 69 2.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q675H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.2 2481 57 2.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.1.2 2481 40 1.6% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,A522V,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DV.6 2474 1837 74.3% 0 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) DV.6 2474 77 3.1% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S,N764K] DV.6 2474 32 1.3% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S,I1216V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.6 2474 29 1.2% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S,S673T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.6 2474 14 0.6% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S,T678I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.2.1 2473 1453 58.8% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.2.2.1 2473 887 35.9% 29 +[V213G,G339D,Q493R,I1221T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.2.1 2473 40 1.6% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.2.2.1 2473 22 0.9% 25 +[V213G,G339D,Q493R,I1221T]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.2.1 2473 11 0.4% 30 +[G75A,V213G,G339D,Q493R,I1221T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.434 2472 1292 52.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.434 2472 555 22.5% 1 +[D1168G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.434 2472 61 2.5% 1 +[D1084G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.434 2472 46 1.9% 1 +[T95I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.434 2472 33 1.3% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.1 2453 1750 71.3% 0 +[T573I] (consensus) XBB.1.5.1 2453 35 1.4% 1 +[T573I]-[K417N] XBB.1.5.1 2453 34 1.4% 1 +[H146K,T573I]-[H146Q] XBB.1.5.1 2453 28 1.1% 1 +[H245Y,T573I] XBB.1.5.1 2453 23 0.9% 1 BQ.1.2.3 2447 1699 69.4% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.2.3 2447 138 5.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2.3 2447 126 5.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,E484V,F486V,I666V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] BQ.1.2.3 2447 70 2.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V,I934V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2.3 2447 27 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V,T791P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] XBB.1.15 2438 1536 63.0% 0 +[F486S]-[F486P] (consensus) XBB.1.15 2438 183 7.5% 1 +[F486S]-[K417N,F486P] XBB.1.15 2438 63 2.6% 1 +[F486S,V1122L]-[F486P] XBB.1.15 2438 53 2.2% 1 +[F486S]-[G252V,F486P] XBB.1.15 2438 41 1.7% 1 +[H146K,F486S]-[H146Q,F486P] BA.2.3.11 2436 2110 86.6% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.11 2436 31 1.3% 1 +[V213G,G339D,Q493R,A570V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.11 2436 20 0.8% 1 +[V90I,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.11 2436 19 0.8% 1 +[V213G,G339D,Q493R,V622A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.11 2436 15 0.6% 1 +[V213G,G339D,Q493R,K1191N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.107 2435 1377 56.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.107 2435 288 11.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.107 2435 57 2.3% 1 +[T19R,T95I,V143F,E156G,F157-,R158-,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.107 2435 57 2.3% 1 +[T19R,T95I,E156G,F157-,R158-,E180D,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.107 2435 39 1.6% 6 +[L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A 2420 1789 73.9% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) A 2420 82 3.4% 3 +[A222V,D253Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A 2420 53 2.2% 1 +[T29I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A 2420 38 1.6% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A 2420 21 0.9% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.14.1 2408 1673 69.5% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.14.1 2408 167 6.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] BA.1.14.1 2408 53 2.2% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.14.1 2408 50 2.1% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.14.1 2408 36 1.5% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BN.1.3.1 2394 1785 74.6% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3.1 2394 61 2.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1.3.1 2394 20 0.8% 1 +[K147E,W152R,F157L,G181A,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.1 2394 19 0.8% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.1 2394 17 0.7% 1 +[K147E,W152R,F157L,Q183H,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] AY.29.2 2386 2151 90.2% 0 +[T19R,T95I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.29.2 2386 45 1.9% 1 +[T19R,T95I,E156G,F157-,R158-,V308L,Q414R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.2 2386 12 0.5% 1 +[T19R,T95I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.2 2386 10 0.4% 1 +[T19R,T95I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N,Q954K]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.29.2 2386 8 0.3% 2 +[T19R,T95I,E156G,F157-,R158-,S254F,Q414R,L452R,P681R,D950N,Q1208H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.466.2 2376 1356 57.1% 0 +[N439K,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.466.2 2376 246 10.4% 1 +[N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.466.2 2376 94 4.0% 1 +[W152R,N439K,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.466.2 2376 34 1.4% 1 +[L5F,N439K,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.466.2 2376 27 1.1% 1 +[N439K,P681R,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.4 2369 887 37.4% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.5.4 2369 395 16.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.4 2369 292 12.3% 1 +[T19R,D80Y,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.4 2369 176 7.4% 2 +[T19R,D80Y,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.4 2369 30 1.3% 3 +[T19R,D80Y,E156G,F157-,R158-,S162I,H245Y,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.5 2351 1901 80.9% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.5 2351 19 0.8% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1.5 2351 12 0.5% 1 +[K147E,W152R,F157L,I210V,V213G,R214H,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.5 2351 11 0.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,P681R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,P681H] BN.1.5 2351 10 0.4% 2 +[K147E,W152R,F157L,I210V,V213G,K356T]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] AY.24 2349 1416 60.3% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.24 2349 315 13.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.24 2349 66 2.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,T859I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.24 2349 63 2.7% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.24 2349 43 1.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,S680F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.311 2347 1952 83.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.311 2347 104 4.4% 1 +[S477I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.311 2347 21 0.9% 1 +[N125S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.311 2347 21 0.9% 1 +[Q957L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.311 2347 11 0.5% 2 +[Q52H,Q677R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.1 2330 1370 58.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.1 2330 208 8.9% 1 +[H146Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.1 2330 58 2.5% 1 +[T1117I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.1 2330 36 1.5% 1 +[A783S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.1 2330 36 1.5% 2 +[I818V,T1117I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.11 2317 1738 75.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.11 2317 167 7.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1016S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.11 2317 41 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.11 2317 37 1.6% 2 +[H69-,V70-,V213G,G339D,L452R,F486V,A1016S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.11 2317 22 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,H625R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.176 2307 1761 76.3% 0 +[T20I,R357K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.176 2307 281 12.2% 2 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.176 2307 19 0.8% 1 +[L5F,T20I,R357K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.176 2307 18 0.8% 1 +[T20I,R357K,V1264M]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.176 2307 17 0.7% 1 +[T20I,R357K,V433I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.63 2301 1955 85.0% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.63 2301 74 3.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,K814R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.63 2301 27 1.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.63 2301 24 1.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,S704L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.63 2301 19 0.8% 1 +[T19R,E156G,F157-,R158-,A222V,P337L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.1.4 2300 1740 75.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.4 2300 47 2.0% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.4 2300 41 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.1.4 2300 36 1.6% 1 +[H69-,V70-,G184S,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.4 2300 26 1.1% 1 +[Q52H,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.49 2293 1343 58.6% 0 (consensus) XBB.1.5.49 2293 75 3.3% 1 +[T478R]-[T478K] XBB.1.5.49 2293 63 2.7% 1 -[K417N] XBB.1.5.49 2293 52 2.3% 1 +[H146K]-[H146Q] XBB.1.5.49 2293 38 1.7% 1 +[T588I] AY.59 2279 1144 50.2% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.59 2279 360 15.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.59 2279 69 3.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.59 2279 22 1.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,G932V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.59 2279 15 0.7% 7 +[T19R,P85T,V90D,Y91D,F92S,S94T,E156G,F157-,R158-,A222V,L452R,P681R,D950N,E1182Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.10 2253 1782 79.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.10 2253 39 1.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.1.10 2253 30 1.3% 1 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.10 2253 24 1.1% 1 +[H69-,V70-,V213G,Q271E,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.10 2253 24 1.1% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AY.4.9 2242 1353 60.3% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.9 2242 312 13.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.9 2242 57 2.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.9 2242 54 2.4% 3 +[T19R,T95I,E156G,F157-,R158-,A352S,L452R,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.9 2242 29 1.3% 2 +[T19R,T95I,E156G,F157-,R158-,A352S,L452R,Q677H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.1 2239 1477 66.0% 0 +[T19R,T95I,E156G,F157-,R158-,W258L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.1 2239 140 6.3% 1 +[T19R,T95I,E156G,F157-,R158-,W258L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.1 2239 76 3.4% 1 +[V16A,T19R,T95I,E156G,F157-,R158-,W258L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.1 2239 40 1.8% 2 +[T19R,T95I,E156G,F157-,R158-,W258L,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.1 2239 30 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,W258L,L452R,P681R,D950N,M1237I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.1 2229 1360 61.0% 0 +[T95I,E154K,L452R,E484Q,P681R,Q1071H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.617.1 2229 95 4.3% 1 +[T95I,L452R,E484Q,P681R,Q1071H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.1 2229 54 2.4% 1 +[T95I,E154K,L452R,E484Q,P681R,Q1071H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.1 2229 41 1.8% 2 +[E154K,L452R,E484Q,P681R,Q1071H,H1101D]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617.1 2229 41 1.8% 2 +[T95I,E154K,L452R,E484Q,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.18 2229 1612 72.3% 0 +[G75R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.18 2229 60 2.7% 1 +[G75R,A684V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.18 2229 60 2.7% 1 +[G75R,S640F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.18 2229 58 2.6% 1 +[G75R,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.18 2229 58 2.6% 1 +[G75R,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XE 2227 2028 91.1% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) XE 2227 57 2.6% 1 +[V213G,G339D,Q493R,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XE 2227 17 0.8% 1 +[V213G,H245N,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XE 2227 17 0.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] XE 2227 6 0.3% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.1.32 2218 1569 70.7% 0 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.32 2218 90 4.1% 1 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T1120S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.32 2218 47 2.1% 1 +[H69-,V70-,M153I,V213G,T323I,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.32 2218 33 1.5% 1 +[H69-,V70-,M153I,V213G,A260T,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.32 2218 26 1.2% 1 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T883I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BF.13 2205 1708 77.5% 0 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.13 2205 50 2.3% 2 +[L5F,H69-,V70-,V213G,G339D,R346S,L452R,F486V,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.13 2205 37 1.7% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.13 2205 32 1.5% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.13 2205 23 1.0% 1 +[H69-,V70-,V213G,A222S,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] P.1.1 2183 682 31.2% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.1 2183 475 21.8% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.1 2183 358 16.4% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,S813N,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.1 2183 60 2.7% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,S640F,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.1 2183 56 2.6% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,E583D,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.15 2173 1165 53.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.15 2173 295 13.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.15 2173 48 2.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A701V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.15 2173 45 2.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,L938F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.15 2173 26 1.2% 1 +[H69-,V70-,E180G,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.20 2166 1587 73.3% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.20 2166 356 16.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A1070V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.20 2166 15 0.7% 1 +[H69-,V70-,V213G,L216F,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.20 2166 12 0.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,G1124V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.20 2166 10 0.5% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] XBB.1.5.17 2156 1440 66.8% 0 (consensus) XBB.1.5.17 2156 67 3.1% 1 +[H146K]-[H146Q] XBB.1.5.17 2156 27 1.3% 2 +[S256L,F490P]-[F490S] XBB.1.5.17 2156 25 1.2% 1 +[N556K] XBB.1.5.17 2156 22 1.0% 1 -[K417N] FL.2 2139 1352 63.2% 0 (consensus) FL.2 2139 51 2.4% 3 +[L141-,G142-,V143-]-[G142D] FL.2 2139 30 1.4% 1 +[S256P] FL.2 2139 26 1.2% 1 -[K417N] FL.2 2139 25 1.2% 1 +[H146K]-[H146Q] BQ.1.13.1 2126 1614 75.9% 0 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.13.1 2126 34 1.6% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.13.1 2126 32 1.5% 1 +[L5F,H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.13.1 2126 26 1.2% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.13.1 2126 19 0.9% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V,E780G]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.582 2124 1490 70.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.582 2124 145 6.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.582 2124 45 2.1% 2 +[L5F,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.582 2124 43 2.0% 1 +[V1164F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.582 2124 27 1.3% 1 +[D138H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.57 2123 1584 74.6% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.57 2123 37 1.7% 1 +[T19R,S98F,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.57 2123 37 1.7% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.57 2123 29 1.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,P1079S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.57 2123 25 1.2% 1 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.4 2121 1608 75.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.4 2121 49 2.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.4 2121 39 1.8% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.4 2121 35 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.4 2121 24 1.1% 2 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] EG.5.1.3 2119 1549 73.1% 0 +[Q52H,F456L] (consensus) EG.5.1.3 2119 44 2.1% 1 +[Q52H,F456L,T732I] EG.5.1.3 2119 40 1.9% 1 +[Q52H,G75V,F456L] EG.5.1.3 2119 38 1.8% 1 +[Q52H,H146K,F456L]-[H146Q] EG.5.1.3 2119 28 1.3% 2 +[Q52H,L455F,F456L,S704L] BA.2.9.5 2117 1629 76.9% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.9.5 2117 81 3.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.9.5 2117 70 3.3% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.5 2117 16 0.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,N764K] BA.2.9.5 2117 14 0.7% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.20 2108 1473 69.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.20 2108 135 6.4% 1 +[H69-,V70-,V213G,T259I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.20 2108 126 6.0% 1 +[A67S,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.20 2108 51 2.4% 2 +[H69-,V70-,K147N,V213G,S247N,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.20 2108 19 0.9% 1 +[H69-,V70-,W152L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.82 2107 1728 82.0% 0 +[A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.82 2107 45 2.1% 1 +[A222V,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.82 2107 30 1.4% 1 +[T95N,A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.82 2107 26 1.2% 1 +[L18F,A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.82 2107 20 0.9% 1 +[A222V,A262S,P272L,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.5.4 2100 1646 78.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.5.4 2100 75 3.6% 2 +[H69-,V70-,V213G,G339D,L452R,F486V,T572S,A1020S,C1235F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.4 2100 51 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G946R,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.4 2100 36 1.7% 1 +[H69-,V70-,V213G,T299I,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.4 2100 18 0.9% 1 +[H69-,V70-,L176F,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] GJ.1.2 2095 1320 63.0% 0 +[K182N,D253G,P521S]-[G252V] (consensus) GJ.1.2 2095 66 3.2% 1 +[H146K,K182N,D253G,P521S]-[H146Q,G252V] GJ.1.2 2095 46 2.2% 1 +[K182N,D253G,T478R,P521S]-[G252V,T478K] GJ.1.2 2095 39 1.9% 1 +[K182N,D253G,P521S,I834V]-[G252V] GJ.1.2 2095 28 1.3% 1 +[T76I,K182N,D253G,P521S]-[G252V] B.1.1.529 2089 191 9.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H] B.1.1.529 2089 41 2.0% 2 +[A67V,H69-,V70-,T95I,V143-,Y145-,L452R,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H] B.1.1.529 2089 31 1.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H] B.1.1.529 2089 28 1.3% 10 +[T19R,A67V,H69-,V70-,T95I,V143-,Y145-,E156G,F157-,R158-,E554Q,N856K]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,N764K,D796Y,N969K] B.1.1.529 2089 27 1.3% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,E156G,F157-,R158-,L452R,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H] BA.5.1.27 2085 1407 67.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.27 2085 192 9.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V687I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.27 2085 67 3.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.27 2085 23 1.1% 4 +[H69-,V70-,V213G,G339D,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.27 2085 19 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D1184Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.1.10 2084 1835 88.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.10 2084 40 1.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F,Q1201K]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.10 2084 18 0.9% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.10 2084 16 0.8% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.10 2084 9 0.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.37 2082 767 36.8% 0 +[T19R,E156G,F157-,R158-,A222V,V367L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.37 2082 333 16.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.37 2082 235 11.3% 1 +[T19R,E156G,F157-,R158-,A222V,V367L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.37 2082 164 7.9% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,Y508H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.37 2082 79 3.8% 3 +[T19R,E156G,F157-,R158-,A222V,L452R,Y508H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DY.1 2081 1527 73.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,A570S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) DY.1 2081 44 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A570S,N1125S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.1 2081 24 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A570S,V1228L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.1 2081 24 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A570S,E1258D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.1 2081 18 0.9% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,A570S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.122.2 2080 1140 54.8% 0 +[T19R,E156G,F157-,R158-,A411S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122.2 2080 282 13.6% 2 +[T19R,E156G,F157-,R158-,A411S,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.2 2080 247 11.9% 1 +[T19R,E156G,F157-,R158-,A411S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.2 2080 30 1.4% 1 +[T19R,E156G,F157-,R158-,A411S,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.2 2080 25 1.2% 1 +[T19R,E156G,F157-,R158-,A411S,L452R,P681R,D950N,T1117I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.10.2 2079 1746 84.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.10.2 2079 132 6.3% 31 +[R34L,A123S,V213G,R214L,G339D,A344S,+370F,A372P,S373F,T376-,A411S,V433F,G476C,Q493L,Q498L,R577L,R634L,R646L,A672S,R682L,R683L,R685L,R765L,G857C,R983L,R1091L,R1185L,D1199Y,D1260Y]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,N440K,V445P,G446S,N460K,F486P,F490S,Q498R] BA.2.10.2 2079 32 1.5% 1 +[F157L,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.10.2 2079 25 1.2% 1 +[V213G,G339D,Q493R,S929N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.10.2 2079 22 1.1% 1 +[V213G,G339D,Q493R,L752F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.258.11 2076 981 47.3% 0 +[H69-,V70-,V143F,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.258.11 2076 593 28.6% 1 +[H69-,V70-,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.11 2076 131 6.3% 2 +[H69-,V70-,G261R,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.11 2076 90 4.3% 1 +[H69-,V70-,V143F,N439K,G1085A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.11 2076 52 2.5% 1 +[H69-,V70-,V143F,N439K,S673G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.560 2071 778 37.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.560 2071 330 15.9% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.560 2071 84 4.1% 2 +[F157L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.560 2071 40 1.9% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.560 2071 33 1.6% 1 +[Q218H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.45 2071 1997 96.4% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.45 2071 10 0.5% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.45 2071 5 0.2% 1 +[G75V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.45 2071 5 0.2% 1 +[V83F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.45 2071 4 0.2% 1 +[D80Y,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.7 2044 1461 71.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.7 2044 242 11.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.7 2044 27 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.7 2044 23 1.1% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.7 2044 16 0.8% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.23 2042 770 37.7% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.23 2042 737 36.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.23 2042 75 3.7% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.23 2042 24 1.2% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.23 2042 17 0.8% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.400 2033 970 47.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.400 2033 258 12.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.400 2033 178 8.8% 1 +[G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.400 2033 138 6.8% 1 +[H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.400 2033 85 4.2% 1 +[A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.40.1 1996 1516 76.0% 0 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.40.1 1996 102 5.1% 1 +[M177V,V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.40.1 1996 40 2.0% 1 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.40.1 1996 23 1.2% 1 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.40.1 1996 22 1.1% 1 +[V213G,G339D,K417T,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,K417N,V445P,G446S,N460K,F486P,F490S] BA.2.3.7 1993 980 49.2% 0 +[K97E,V213G,G339D,Q493R,G1251V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.7 1993 465 23.3% 1 +[K97E,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.7 1993 180 9.0% 1 +[K97E,V213G,G339D,Q493R,G1251V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.7 1993 71 3.6% 2 +[K97E,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.7 1993 61 3.1% 1 +[K97E,V213G,G339D,Q493R,G1251V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] AY.23.1 1991 1714 86.1% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,L1234I,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.23.1 1991 45 2.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1230L,L1234I,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.23.1 1991 26 1.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,E1188D,L1234I,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.23.1 1991 13 0.7% 3 +[T19R,L452R,P681R,D950N,L1234I,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.23.1 1991 9 0.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,P1162S,L1234I,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.92 1990 1056 53.1% 0 +[T19R,T95I,E156G,F157-,R158-,D178N,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.92 1990 206 10.4% 1 +[T19R,T95I,E156G,F157-,R158-,D178N,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.92 1990 156 7.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.92 1990 59 3.0% 1 +[T19R,T95I,E156G,F157-,R158-,D178N,L242F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.92 1990 38 1.9% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AE.8 1965 1715 87.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AE.8 1965 16 0.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AE.8 1965 14 0.7% 1 +[I1216L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AE.8 1965 13 0.7% 1 +[P809S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AE.8 1965 11 0.6% 1 +[V736I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.36 1949 1207 61.9% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.36 1949 506 26.0% 1 +[P26S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.36 1949 33 1.7% 1 +[P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.36 1949 22 1.1% 1 +[T95I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.36 1949 21 1.1% 2 +[P26S,Q1201K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.7 1931 1622 84.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.7 1931 47 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T747I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.7 1931 34 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.7 1931 17 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,H1101Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.7 1931 10 0.5% 1 +[S12F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.2 1919 1495 77.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.2 1919 53 2.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.2 1919 31 1.6% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.2 1919 23 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.2 1919 22 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1122L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.48 1919 1666 86.8% 0 +[V213G,Y248S,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.48 1919 63 3.3% 1 +[V213G,Y248S,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.48 1919 17 0.9% 1 +[V213G,Y248S,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.48 1919 7 0.4% 2 +[V83F,V213G,Y248S,G339D,Q493R]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.48 1919 6 0.3% 1 +[V213G,Y248S,G339D,Q493R,G1171S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.517 1913 923 48.2% 0 +[N501T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.517 1913 322 16.8% 1 +[N501T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.517 1913 160 8.4% 2 +[N501T,Q613H,S640F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.517 1913 93 4.9% 1 +[N501T,V1133A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.517 1913 52 2.7% 1 +[N501T,Q613H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.317 1911 686 35.9% 0 +[D138Y,A522S,Q675R,A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.317 1911 374 19.6% 5 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.317 1911 83 4.3% 1 +[D138Y,Q675R,A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.317 1911 57 3.0% 1 +[D138Y,A222V,A522S,Q675R,A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.317 1911 55 2.9% 3 +[A522S,Q675R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.6 1899 1468 77.3% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.6 1899 77 4.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.6 1899 62 3.3% 1 +[V213G,G339D,Q493R,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.6 1899 48 2.5% 1 +[I210V,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.6 1899 30 1.6% 1 +[V213G,G339D,Q493R,D1259H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.561 1887 1188 63.0% 0 +[D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.561 1887 412 21.8% 1 +[D138Y,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.561 1887 18 1.0% 3 +[D138Y,S939F,V1230A,T1238I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.561 1887 16 0.8% 2 +[D138Y,D178E,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.561 1887 11 0.6% 1 +[D138Y,V1122L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.79 1883 1041 55.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.79 1883 205 10.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.79 1883 25 1.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,P812S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.79 1883 21 1.1% 1 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.79 1883 18 1.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,T859N,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EF.1 1880 1296 68.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) EF.1 1880 77 4.1% 1 +[H69-,V70-,E132Q,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EF.1 1880 45 2.4% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EF.1 1880 28 1.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] EF.1 1880 15 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] CL.1 1880 1113 59.2% 0 +[H69-,V70-,K150E,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) CL.1 1880 62 3.3% 5 +[H69-,V70-,K150E,V213G,G339D,K444N,L452R,F486V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CL.1 1880 47 2.5% 1 +[H69-,V70-,K150E,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S,N764K] CL.1 1880 46 2.4% 1 +[H69-,V70-,K150E,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,F486P,F490S] CL.1 1880 35 1.9% 2 +[H69-,V70-,K150E,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S,N764K,D796Y] BA.5.1.18 1873 1453 77.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.18 1873 47 2.5% 1 +[H69-,V70-,G75V,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.18 1873 30 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.18 1873 17 0.9% 1 +[H69-,V70-,V159I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.18 1873 17 0.9% 1 +[T19L,H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] P.1.16 1870 1441 77.1% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.16 1870 38 2.0% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E471Q,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.16 1870 29 1.6% 1 +[L18F,T20N,P26S,D138Y,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.16 1870 22 1.2% 1 +[L5F,L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.16 1870 21 1.1% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,K528I,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.2 1865 964 51.7% 0 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.2 1865 450 24.1% 1 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.2 1865 41 2.2% 2 +[H69-,V70-,N99D,V213G,D253G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.2 1865 35 1.9% 1 +[H69-,V70-,H146-,V213G,D253G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.2 1865 25 1.3% 2 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V,D1260H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.25 1853 1101 59.4% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.25 1853 97 5.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.25 1853 90 4.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.25 1853 51 2.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T791A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.25 1853 49 2.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T747I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.5.2.19 1843 1232 66.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.19 1843 95 5.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,H1083Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.19 1843 83 4.5% 4 +[H69-,V70-,L179F,G339D,N450D,L452R,F486V,F1075L]-[V83A,Y144-,H146Q,Q183E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.19 1843 44 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,C1247F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.19 1843 34 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D1127A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.41 1831 741 40.5% 0 +[T19R,E156G,F157-,R158-,A262S,L452R,S477I,P681R,D950N,G1167V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.41 1831 509 27.8% 1 +[T19R,E156G,F157-,R158-,A262S,L452R,S477I,P681R,D950N,G1167V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.41 1831 32 1.7% 1 +[T19R,E156G,F157-,R158-,A262S,L452R,S477I,Q613H,P681R,D950N,G1167V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.41 1831 25 1.4% 1 +[T19R,E156G,F157-,R158-,A262S,L452R,S477I,T678I,P681R,D950N,G1167V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.41 1831 25 1.4% 2 +[T19R,E156G,F157-,R158-,A262S,L452R,S477I,Q613H,P681R,D950N,G1167V,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.45 1829 1247 68.2% 0 +[H69-,V70-,V213G,Y248D,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.45 1829 34 1.9% 1 +[H69-,V70-,V213G,Y248D,G339D,K444T,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.45 1829 20 1.1% 1 +[H69-,V70-,V213G,Y248D,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,F486P,F490S] BQ.1.1.45 1829 18 1.0% 1 +[H69-,V70-,V213G,Y248D,G339D,K444T,G446V,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.45 1829 17 0.9% 1 +[H69-,V70-,V213G,Y248D,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,S371F,V445P,G446S,F486P,F490S] B.1.1.307 1820 1270 69.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.307 1820 335 18.4% 1 +[G261V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.307 1820 28 1.5% 1 +[A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.307 1820 17 0.9% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.1.307 1820 17 0.9% 1 +[C1235F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.3.1 1818 1072 59.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.3.1 1818 137 7.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q,I934V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3.1 1818 58 3.2% 1 +[H69-,V70-,V213G,P251L,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3.1 1818 45 2.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3.1 1818 40 2.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q,P621S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.18 1818 1104 60.7% 0 +[H69-,V70-,V213G,G339D,K444R,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.18 1818 70 3.9% 1 +[H69-,V70-,L212S,V213G,G339D,K444R,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.18 1818 65 3.6% 2 +[H69-,V70-,H146-,V213G,G339D,K444R,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.18 1818 29 1.6% 1 +[H69-,V70-,V213G,G339D,K444R,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.18 1818 22 1.2% 1 +[H69-,V70-,V213G,G339D,K444R,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XAZ 1808 1314 72.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) XAZ 1808 63 3.5% 1 +[H69-,V70-,P82L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XAZ 1808 44 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] XAZ 1808 37 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] XAZ 1808 30 1.7% 1 +[H69-,V70-,V213G,G339D,R346I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.32 1800 1093 60.7% 0 (consensus) XBB.1.5.32 1800 233 12.9% 1 +[T883I] XBB.1.5.32 1800 38 2.1% 1 +[D796H]-[D796Y] XBB.1.5.32 1800 21 1.2% 6 -[R408S,K417N,N440K,V445P,G446S,N460K] XBB.1.5.32 1800 18 1.0% 1 +[L335F] B.1.1.25 1800 1009 56.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.25 1800 193 10.7% 1 +[P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.25 1800 126 7.0% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.25 1800 15 0.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.25 1800 14 0.8% 1 +[V6I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.23 1787 1260 70.5% 0 +[H69-,V70-,Y145H,V213G,S255F,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.23 1787 89 5.0% 1 +[H69-,V70-,V213G,S255F,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.23 1787 63 3.5% 1 +[H69-,V70-,Y145H,V213G,S255F,G339D,V445A,L452R,F486V,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.23 1787 30 1.7% 1 +[H69-,V70-,Y145H,V213G,S255F,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.2.23 1787 22 1.2% 1 +[H69-,V70-,Y145H,V213G,S255F,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] AY.34.1.1 1782 855 48.0% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.34.1.1 1782 197 11.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1.1 1782 106 5.9% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1.1 1782 68 3.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.1.1 1782 32 1.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,D950N,A1078S,L1265F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DN.2 1778 1397 78.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) DN.2 1778 56 3.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q675H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DN.2 1778 51 2.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DN.2 1778 21 1.2% 1 +[H69-,V70-,F186L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DN.2 1778 15 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F456L,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.8 1775 1028 57.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.8 1775 389 21.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.8 1775 20 1.1% 1 +[H69-,V70-,K150N,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.8 1775 15 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.8 1775 14 0.8% 1 +[H69-,V70-,K147N,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.5.3.3 1772 1519 85.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.3.3 1772 19 1.1% 1 +[H69-,V70-,Q183K,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.3 1772 16 0.9% 1 +[H69-,V70-,V213G,H245Y,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.3 1772 12 0.7% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.3 1772 9 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,K921R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.17 1741 1591 91.4% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.17 1741 21 1.2% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.3.17 1741 21 1.2% 1 +[V213G,L216F,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.17 1741 14 0.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.17 1741 9 0.5% 1 +[V213G,G339D,Q493R,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.116 1739 791 45.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.116 1739 212 12.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1162L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116 1739 192 11.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116 1739 51 2.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,V772I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.116 1739 35 2.0% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Q.4 1728 1379 79.8% 0 +[H69-,V70-,A570D,P681R,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) Q.4 1728 46 2.7% 1 +[H69-,V70-,R408G,A570D,P681R,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Q.4 1728 23 1.3% 1 +[H69-,V70-,A570D,P681R,T716I,S943P,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Q.4 1728 22 1.3% 1 +[H69-,V70-,V308L,A570D,P681R,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Q.4 1728 19 1.1% 1 +[L5F,H69-,V70-,A570D,P681R,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.15 1724 950 55.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.15 1724 168 9.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.15 1724 122 7.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.15 1724 66 3.8% 1 +[H69-,V70-,V213G,V289I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.15 1724 39 2.3% 1 +[H69-,V70-,S98F,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.21 1721 1290 75.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.21 1721 176 10.2% 1 +[V213G,G339D,Q493R,Q1113K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.21 1721 58 3.4% 1 +[W64L,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.21 1721 23 1.3% 1 +[V213G,G339D,Q493R,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.21 1721 22 1.3% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] B.1.1.306 1716 778 45.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.306 1716 130 7.6% 4 +[L18F,E484K,Q675H]-[T19I,L24-,P25-,P26-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.306 1716 121 7.1% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.306 1716 48 2.8% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.306 1716 33 1.9% 1 +[L18F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.24 1713 1042 60.8% 0 (consensus) XBB.1.5.24 1713 38 2.2% 1 +[T883I] XBB.1.5.24 1713 27 1.6% 1 +[L5F] XBB.1.5.24 1713 23 1.3% 1 +[H146K]-[H146Q] XBB.1.5.24 1713 23 1.3% 1 -[R408S] XBB.1.5.37 1711 1083 63.3% 0 +[K1045R] (consensus) XBB.1.5.37 1711 54 3.2% 1 +[F456L,K1045R] XBB.1.5.37 1711 42 2.5% 1 +[K1045R]-[K417N] XBB.1.5.37 1711 28 1.6% 1 +[H146K,K1045R]-[H146Q] XBB.1.5.37 1711 20 1.2% 2 +[K1045R]-[R408S,S477N] AY.2 1710 1149 67.2% 0 +[T19R,V70F,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.2 1710 272 15.9% 1 +[T19R,V70F,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.2 1710 26 1.5% 1 +[T19R,V70F,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.2 1710 22 1.3% 2 +[T19R,V70F,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.2 1710 20 1.2% 1 +[T19R,V70F,E156G,F157-,R158-,A222V,K356N,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.5 1709 1073 62.8% 0 (consensus) FL.5 1709 32 1.9% 1 +[H146K]-[H146Q] FL.5 1709 28 1.6% 1 +[I651V] FL.5 1709 17 1.0% 1 +[G339Y]-[G339H] FL.5 1709 17 1.0% 1 -[R408S] BQ.1.1.40 1699 1228 72.3% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.40 1699 58 3.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.40 1699 57 3.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.40 1699 23 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,G1124V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.40 1699 19 1.1% 6 +[L24S,P25Y,Y28-,T29-,H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[L24-,P25-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DY.3 1693 1372 81.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) DY.3 1693 20 1.2% 1 +[H69-,V70-,V213G,G339D,G446D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.3 1693 9 0.5% 1 +[H69-,V70-,V83F,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.3 1693 8 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] DY.3 1693 8 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,F1121L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.619.1 1691 1435 84.9% 0 +[I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.619.1 1691 66 3.9% 1 +[T20I,I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.619.1 1691 17 1.0% 1 +[G75V,I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.619.1 1691 11 0.7% 1 +[L18F,I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.619.1 1691 10 0.6% 1 +[I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.11 1672 1380 82.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.11 1672 99 5.9% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.11 1672 23 1.4% 1 +[H69-,V70-,G181R,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.11 1672 16 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S691F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.11 1672 9 0.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.12 1664 869 52.2% 0 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.12 1664 205 12.3% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V,A1070V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.12 1664 69 4.1% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.12 1664 49 2.9% 2 +[H69-,V70-,V213G,S255F,G339D,V445A,L452R,F486V,T747I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.12 1664 36 2.2% 2 +[H69-,V70-,N185D,V213G,G339D,V445A,L452R,F486V,A1070V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.8 1631 1284 78.7% 0 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.1.8 1631 40 2.5% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.1.8 1631 17 1.0% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,D936Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.8 1631 12 0.7% 1 +[V3G,H69-,V70-,W152L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.8 1631 10 0.6% 4 +[V3G,H69-,V70-,W152L,N211I,L212G,V213-,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.7 1630 1157 71.0% 0 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.7 1630 85 5.2% 1 +[H69-,V70-,V213G,Y248H,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.7 1630 26 1.6% 1 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,H655Y] BA.5.2.7 1630 25 1.5% 5 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.7 1630 23 1.4% 1 +[H69-,V70-,V213G,G339Y,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.577 1628 930 57.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.577 1628 119 7.3% 1 +[I834T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.577 1628 105 6.4% 1 +[V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.577 1628 31 1.9% 1 +[R21K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.577 1628 30 1.8% 2 +[Q52R,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.17 1624 1160 71.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.17 1624 68 4.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.17 1624 50 3.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.17 1624 24 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,M740I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.17 1624 18 1.1% 1 +[V16F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.31 1624 904 55.7% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.31 1624 273 16.8% 1 +[V213G,G339D,Q493R,N925S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.31 1624 164 10.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.31 1624 66 4.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.31 1624 29 1.8% 2 +[H69-,V70-,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.2 1621 1346 83.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.2 1621 26 1.6% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.2 1621 17 1.0% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.2 1621 9 0.6% 1 +[W64R,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.2 1621 8 0.5% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.2.1 1618 1181 73.0% 0 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.2.1 1618 44 2.7% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V,E554A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.2.1 1618 26 1.6% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.2.1 1618 20 1.2% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V,T638R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.2.1 1618 17 1.1% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BE.1.1.1 1616 825 51.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.1.1 1616 166 10.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T859S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.1.1 1616 64 4.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.1.1 1616 40 2.5% 1 +[H69-,V70-,V213G,G339D,D420N,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.1.1 1616 33 2.0% 1 +[H69-,V70-,V213G,T299I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.36.17 1605 1317 82.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.17 1605 38 2.4% 1 +[R102I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.17 1605 36 2.2% 1 +[A27V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.17 1605 15 0.9% 1 +[V308L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.17 1605 10 0.6% 1 +[G946V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.3 1598 978 61.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.5.3 1598 282 17.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.3 1598 32 2.0% 2 +[T19R,E156G,F157-,R158-,A263V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.3 1598 30 1.9% 1 +[T19R,E156G,F157-,R158-,A263V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.5.3 1598 16 1.0% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.596 1594 887 55.6% 0 +[V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.596 1594 66 4.1% 2 +[Q677P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.596 1594 60 3.8% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.596 1594 49 3.1% 1 +[T20I,V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.596 1594 34 2.1% 1 +[D627H,V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.13 1590 1214 76.4% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.13 1590 55 3.5% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.13 1590 37 2.3% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.13 1590 24 1.5% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.13 1590 17 1.1% 2 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,V622I,A706V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BF.22 1590 1337 84.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.22 1590 51 3.2% 1 +[H69-,V70-,V213G,T323A,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.22 1590 33 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G1251V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.22 1590 21 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.22 1590 20 1.3% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.57 1586 966 60.9% 0 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.57 1586 89 5.6% 1 +[H69-,V70-,L176F,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.57 1586 70 4.4% 1 +[H69-,V70-,V213G,P251L,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.57 1586 39 2.5% 1 +[H69-,V70-,H146Y,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.57 1586 36 2.3% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] AY.122.1 1580 700 44.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,T791I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122.1 1580 415 26.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,T791I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.1 1580 52 3.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,T791I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.1 1580 21 1.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,T791I,D950N,L1203F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.1 1580 21 1.3% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,T791I,D950N,L1049I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BM.1.1.3 1576 917 58.2% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BM.1.1.3 1576 47 3.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.1.1.3 1576 33 2.1% 1 +[K147E,W152R,F157L,N185T,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.1.1.3 1576 32 2.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,F490P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.1.1.3 1576 29 1.8% 4 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.5.1.16 1575 1310 83.2% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.16 1575 59 3.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,Q1208H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.16 1575 30 1.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T1006I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.16 1575 27 1.7% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.16 1575 25 1.6% 1 +[H69-,V70-,V213G,D215G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BK.1 1572 1226 78.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BK.1 1572 50 3.2% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BK.1 1572 31 2.0% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BK.1 1572 15 1.0% 2 +[L5F,H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BK.1 1572 12 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.38 1565 1215 77.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.38 1565 83 5.3% 1 +[A67V,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.38 1565 31 2.0% 1 +[H69-,V70-,D111N,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.38 1565 21 1.3% 2 +[A67V,H69-,V70-,V213G,G339D,L452R,F486V,K1073N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.38 1565 20 1.3% 1 +[H69-,V70-,V213G,V308L,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XB 1556 862 55.4% 0 +[L18R,T95I,R158S,A688V,S735A,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) XB 1556 109 7.0% 1 +[L18R,T95I,R158S,A688V,S735A,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] XB 1556 48 3.1% 1 +[L18R,T95I,R158S,A688V,S735A,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] XB 1556 39 2.5% 1 +[L18R,T95I,R158S,A688V,S735A,T1027I,Y1206F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] XB 1556 28 1.8% 2 +[L18R,T95I,R158S,E484Q,A688V,S735A,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BF.7.21 1555 1081 69.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.21 1555 67 4.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.21 1555 32 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G1267E]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.21 1555 31 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7.21 1555 22 1.4% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.20 1553 967 62.3% 0 (consensus) XBB.1.5.20 1553 62 4.0% 1 +[Q954Y]-[Q954H] XBB.1.5.20 1553 41 2.6% 1 +[H146K]-[H146Q] XBB.1.5.20 1553 33 2.1% 1 -[R408S] XBB.1.5.20 1553 33 2.1% 1 -[K417N] BE.10 1551 907 58.5% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BE.10 1551 93 6.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BE.10 1551 46 3.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BE.10 1551 39 2.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BE.10 1551 35 2.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,F486P,F490S] BA.5.2.55 1551 1073 69.2% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.55 1551 197 12.7% 1 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.55 1551 49 3.2% 2 +[H69-,V70-,N164K,V213G,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.55 1551 31 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,E702D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.55 1551 15 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T1009I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.94 1549 581 37.5% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.94 1549 542 35.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.94 1549 65 4.2% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,D1153Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.94 1549 54 3.5% 2 +[T19R,E156G,F157-,R158-,S255F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.94 1549 28 1.8% 1 +[T19R,E156G,F157-,R158-,L452R,A475V,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.45 1548 663 42.8% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.45 1548 269 17.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.45 1548 126 8.1% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,P792S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.45 1548 43 2.8% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,T747I,D936N,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.45 1548 30 1.9% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.40 1548 1275 82.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.40 1548 29 1.9% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.40 1548 24 1.6% 1 +[A27V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.40 1548 20 1.3% 1 +[A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.40 1548 14 0.9% 1 +[L176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.128 1543 1224 79.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.128 1543 142 9.2% 1 +[P809S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.128 1543 60 3.9% 1 +[A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.128 1543 21 1.4% 1 +[A879S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.128 1543 15 1.0% 2 +[P809S,G1085E]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.75 1538 597 38.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] (consensus) BA.2.75 1538 148 9.6% 4 +[K147E,W152R,F157L,I210V,V213G,G257S]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.2.75 1538 42 2.7% 3 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.75 1538 39 2.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.2.75 1538 21 1.4% 5 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,G446S,F486P,F490S] B.1.1.39 1533 563 36.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.39 1533 396 25.8% 1 +[S673T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.39 1533 124 8.1% 1 +[M1229I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.39 1533 55 3.6% 1 +[S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.39 1533 37 2.4% 1 +[V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.53 1526 681 44.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.53 1526 408 26.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.53 1526 42 2.8% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.53 1526 24 1.6% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.53 1526 18 1.2% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,C1253F]-[T19I,L24-,P25-,P26-,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.2 1514 869 57.4% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.39.2 1514 331 21.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.2 1514 22 1.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,V635A,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.2 1514 20 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.39.2 1514 15 1.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q613H,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.2.2 1508 1027 68.1% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.2.2 1508 108 7.2% 1 +[K147E,W152R,F157L,I210V,V213G,A222V,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.2 1508 17 1.1% 1 +[H49Y,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.2 1508 15 1.0% 1 +[K147E,W152R,F157L,I210V,V213G,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.2 1508 15 1.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,A942S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] AY.4.4 1501 839 55.9% 0 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,S929T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.4 1501 185 12.3% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,S929T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.4 1501 30 2.0% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,Q853H,S929T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.4 1501 25 1.7% 1 +[L5F,T19R,G75V,T95I,E156G,F157-,R158-,L452R,P681R,S929T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.4 1501 23 1.5% 2 +[L5F,T19R,G75V,T95I,E156G,F157-,R158-,L452R,P681R,S929T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CH.1.1.2 1499 1055 70.4% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.2 1499 36 2.4% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.2 1499 31 2.1% 1 +[I68T,K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.2 1499 31 2.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,P809Q,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.2 1499 21 1.4% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T549I,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.5.3.2 1497 1222 81.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.3.2 1497 47 3.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.3.2 1497 29 1.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,P681H] BA.5.3.2 1497 17 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D936Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.2 1497 8 0.5% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BQ.1.1.68 1496 983 65.7% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.68 1496 158 10.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.68 1496 64 4.3% 1 +[V36I,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.68 1496 17 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,M1237T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.68 1496 16 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E554K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.10.1 1495 1069 71.5% 0 +[H69-,V70-,H146L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.10.1 1495 146 9.8% 2 +[H69-,V70-,Y145L,H146-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.10.1 1495 19 1.3% 1 +[H69-,V70-,H146L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,F486P,F490S] BQ.1.10.1 1495 15 1.0% 1 +[H66Y,H69-,V70-,H146L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.10.1 1495 12 0.8% 1 +[H69-,V70-,H146L,V213G,G339D,K444T,L452R,F486V,A1020V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.177.35 1493 1155 77.4% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.35 1493 67 4.5% 1 +[A222V,I410V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.35 1493 60 4.0% 1 +[L176F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.35 1493 27 1.8% 1 +[A222V]-[L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.35 1493 17 1.1% 1 +[A222V,C1243F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.10 1484 1273 85.8% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P812S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.10 1484 41 2.8% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,P812S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.10 1484 12 0.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P812S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.10 1484 12 0.8% 2 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,P812S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.10 1484 11 0.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P812S,D950N,C1236F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.106 1481 521 35.2% 0 +[T19R,T95I,E156G,F157-,R158-,S255F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.106 1481 224 15.1% 1 +[T19R,T95I,E156G,F157-,R158-,S255F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.106 1481 101 6.8% 1 +[T19R,T95I,E156G,F157-,R158-,S255F,L452R,P681R,D950N,A1087S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.106 1481 54 3.6% 2 +[T19R,T95I,E156G,F157-,R158-,S255F,L452R,P681R,D950N,A1087S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.106 1481 27 1.8% 2 +[T19R,T95I,E156G,F157-,R158-,S255F,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.44 1479 1177 79.6% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.44 1479 45 3.0% 1 +[S98F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.44 1479 25 1.7% 1 +[A222V,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.44 1479 24 1.6% 2 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.44 1479 12 0.8% 1 +[L176F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.22 1470 1189 80.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.22 1470 20 1.4% 1 +[H69-,V70-,V213G,A260V,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.22 1470 20 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[T19I,V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.22 1470 15 1.0% 1 +[H69-,V70-,W152L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.22 1470 13 0.9% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E1150D,E1202Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BF.36 1470 1133 77.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.36 1470 67 4.6% 1 +[H69-,V70-,V213G,Q271E,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.36 1470 49 3.3% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.36 1470 15 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BF.36 1470 13 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] XBB.1.16.11 1466 1018 69.4% 0 +[E180V,T478R,P521T]-[T478K] (consensus) XBB.1.16.11 1466 87 5.9% 1 +[G72E,E180V,T478R,P521T]-[T478K] XBB.1.16.11 1466 28 1.9% 1 +[E180V,S256L,T478R,P521T]-[T478K] XBB.1.16.11 1466 24 1.6% 1 +[E180V,F186L,T478R,P521T]-[T478K] XBB.1.16.11 1466 14 1.0% 1 +[H146K,E180V,T478R,P521T]-[H146Q,T478K] EG.1.6 1464 875 59.8% 0 +[Q613H] (consensus) EG.1.6 1464 102 7.0% 1 +[H146K,Q613H]-[H146Q] EG.1.6 1464 46 3.1% 1 +[Q613H,V642-] EG.1.6 1464 39 2.7% 1 +[N148T,Q613H] EG.1.6 1464 33 2.3% 1 +[Q613H,G1124V] B.1.1.298 1459 980 67.2% 0 +[H69-,V70-,Y453F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.298 1459 148 10.1% 1 +[H69-,V70-,Y453F,S1147L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.298 1459 107 7.3% 2 +[Y453F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.298 1459 30 2.1% 3 +[L5F,H69-,V70-,Y453F,N751Y,C1250F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.298 1459 18 1.2% 1 +[H69-,V70-,Y453F,G1167V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EF.1.1 1457 1092 74.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) EF.1.1 1457 49 3.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T883I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EF.1.1 1457 32 2.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] EF.1.1 1457 22 1.5% 1 +[H69-,V70-,V213G,G339D,K444T,G446R,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EF.1.1 1457 16 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,F486P,F490S] BQ.1.1.13 1453 706 48.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.13 1453 163 11.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.13 1453 85 5.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S704T]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.13 1453 63 4.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S939F]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.13 1453 31 2.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,F486P,F490S] BA.5.2.16 1451 1021 70.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.16 1451 36 2.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.16 1451 35 2.4% 2 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.16 1451 23 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.2.16 1451 23 1.6% 1 +[H69-,V70-,V213G,S255F,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.1.41 1448 884 61.0% 0 +[H69-,V70-,K182I,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.41 1448 63 4.4% 1 +[H69-,V70-,K182I,V213G,G339D,K444T,L452R,F486V,I931V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.41 1448 55 3.8% 1 +[H69-,V70-,K182I,V213G,G339D,K444T,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.41 1448 46 3.2% 1 +[L5F,H69-,V70-,K182I,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.41 1448 43 3.0% 1 +[H69-,V70-,K182I,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.609 1448 765 52.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.609 1448 289 20.0% 3 +[L5F,L176F,T478R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.609 1448 34 2.3% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.609 1448 17 1.2% 3 +[G75V,Q779R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.609 1448 13 0.9% 1 +[N679S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.279 1441 701 48.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.279 1441 317 22.0% 1 +[L1224F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.279 1441 268 18.6% 2 +[L18F,L1224F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.279 1441 43 3.0% 1 +[Y28H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.279 1441 16 1.1% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2.5 1439 562 39.1% 0 +[L141-,G142-,V143-,D215A,+215AGY,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) A.2.5 1439 79 5.5% 4 +[L141-,G142-,V143-,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2.5 1439 71 4.9% 3 +[D215A,+215AGY,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2.5 1439 43 3.0% 1 +[L141-,G142-,V143-,D215A,+215AGY,L452R,G1219C]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2.5 1439 32 2.2% 2 +[L141-,G142-,V143-,D215A,+215AGY,L452R,T739I,T859I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.2.3.8 1438 1073 74.6% 0 +[D253G,T478R,P521S]-[G252V,T478K] (consensus) XBB.2.3.8 1438 60 4.2% 1 +[D253G,T259I,T478R,P521S]-[G252V,T478K] XBB.2.3.8 1438 18 1.3% 1 +[H146K,D253G,T478R,P521S]-[H146Q,G252V,T478K] XBB.2.3.8 1438 16 1.1% 1 +[D253G,S255F,T478R,P521S]-[G252V,T478K] XBB.2.3.8 1438 8 0.6% 1 +[D253G,T478R,P521S,E661D]-[G252V,T478K] BF.39 1427 1108 77.6% 0 +[H69-,V70-,G181V,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.39 1427 66 4.6% 1 +[H69-,V70-,G181V,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.39 1427 26 1.8% 1 +[H69-,V70-,G181V,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.39 1427 12 0.8% 1 +[H69-,V70-,G181V,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.39 1427 12 0.8% 1 +[H69-,V70-,G181V,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] FY.3.1 1417 614 43.3% 0 +[H146K,Y200C,I210T]-[H146Q] (consensus) FY.3.1 1417 331 23.4% 1 +[Y200C,I210T] FY.3.1 1417 63 4.4% 3 +[Y200C,I210T,L244F,H245-] FY.3.1 1417 24 1.7% 2 +[Y200C,I210T,Q493L] FY.3.1 1417 20 1.4% 2 +[Y200C,I210T,P384H] FD.2 1412 944 66.9% 0 +[H146K]-[H146Q] (consensus) FD.2 1412 145 10.3% 1 FD.2 1412 15 1.1% 1 +[H146K]-[Y144-,H146Q] FD.2 1412 12 0.8% 1 +[H146K,T307I]-[H146Q] FD.2 1412 12 0.8% 1 +[V70G,H146K]-[H146Q] BN.1.3.5 1412 972 68.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3.5 1412 71 5.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,E471Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.5 1412 26 1.8% 2 +[H69-,V70-,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.5 1412 18 1.3% 1 +[G75S,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.5 1412 16 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] B.1.110.3 1404 1089 77.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.110.3 1404 52 3.7% 1 +[D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.110.3 1404 34 2.4% 1 +[E484K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.110.3 1404 17 1.2% 1 +[I210V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.110.3 1404 15 1.1% 1 +[S373L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.623 1397 731 52.3% 0 +[S494P,K854N,E1111K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.623 1397 390 27.9% 1 +[S494P,E1111K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.623 1397 35 2.5% 1 +[T385I,S494P,K854N,E1111K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.623 1397 28 2.0% 2 +[T95I,S494P,E1111K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.623 1397 17 1.2% 2 +[S494P,T678I,E1111K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AY.43.4 1396 275 19.7% 0 +[T19R,E156G,F157-,R158-,K356R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.4 1396 271 19.4% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.4 1396 218 15.6% 1 +[T19R,E156G,F157-,R158-,K356R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.4 1396 207 14.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.4 1396 80 5.7% 2 +[T19R,E156G,F157-,R158-,K356R,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.11 1395 871 62.4% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.11 1395 116 8.3% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.11 1395 87 6.2% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.1.11 1395 38 2.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.1.11 1395 22 1.6% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] AY.38 1385 304 21.9% 0 +[T19R,E156G,F157-,R158-,A222V,T250S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.38 1385 190 13.7% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.38 1385 175 12.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.38 1385 150 10.8% 3 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.38 1385 98 7.1% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.48 1384 957 69.1% 0 (consensus) XBB.1.5.48 1384 47 3.4% 1 -[K417N] XBB.1.5.48 1384 34 2.5% 1 +[H146K]-[H146Q] XBB.1.5.48 1384 18 1.3% 1 +[N148T] XBB.1.5.48 1384 15 1.1% 1 -[G252V] DL.1 1384 755 54.6% 0 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,Q677H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) DL.1 1384 78 5.6% 1 +[H69-,V70-,K147N,V213G,G339D,K444N,L452R,F486V,Q677H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] DL.1 1384 51 3.7% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,Q677H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] DL.1 1384 41 3.0% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,Q677H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,F486P,F490S] DL.1 1384 38 2.7% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,Q677H]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.43 1382 1066 77.1% 0 +[H69-,V70-,K147Q,V213G,G339D,G446D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BA.5.2.43 1382 35 2.5% 1 +[H69-,V70-,K147Q,V213G,G339D,G446D,L452R,F486V,L1265P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.43 1382 17 1.2% 1 +[H69-,V70-,V213G,G339D,G446D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.43 1382 13 0.9% 3 +[H69-,V70-,E154D,V213G,G339D,G446D,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.2.43 1382 9 0.7% 1 +[V62L,H69-,V70-,K147Q,V213G,G339D,G446D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.1.34 1379 996 72.2% 0 +[H69-,V70-,K147-,N149-,V213G,G339D,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.34 1379 160 11.6% 2 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.34 1379 50 3.6% 1 +[H69-,V70-,K147-,N149-,V213G,G339D,L452R,F486V,P1162S,Q1201K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.34 1379 30 2.2% 1 +[H69-,V70-,K147-,N149-,V213G,L216F,G339D,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.34 1379 17 1.2% 1 +[H69-,V70-,K147-,N149-,V213G,G339D,L452R,F486V,P1162S,C1247F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.19 1377 949 68.9% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.19 1377 64 4.6% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.19 1377 59 4.3% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.19 1377 46 3.3% 5 +[A67V,H69-,V70-,T95I,V143-,Y145-,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.19 1377 23 1.7% 4 +[H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] B.1.621.1 1370 980 71.5% 0 +[T95I,+143T,Y144S,Y145N,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.621.1 1370 61 4.5% 1 +[T95I,Y144S,Y145N,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.621.1 1370 26 1.9% 2 +[T95I,Y144S,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.621.1 1370 20 1.5% 1 +[T95I,+143T,Y144S,Y145N,R346K,E484K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.621.1 1370 15 1.1% 1 +[T95I,I101V,+143T,Y144S,Y145N,R346K,E484K,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] XBB.2.3.2 1368 823 60.2% 0 +[G184V,D253G,P521S]-[G252V] (consensus) XBB.2.3.2 1368 37 2.7% 4 +[Y145Q,H146N,K147-,G184V,D253G,P521S]-[Y144-,H146Q,G252V] XBB.2.3.2 1368 33 2.4% 1 +[H146K,G184V,D253G,P521S]-[H146Q,G252V] XBB.2.3.2 1368 18 1.3% 1 +[L5F,G184V,D253G,P521S]-[G252V] XBB.2.3.2 1368 16 1.2% 1 +[G184V,D253G,P521S]-[G252V,K417N] B.1.565 1368 886 64.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.565 1368 182 13.3% 1 +[A1070S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.565 1368 29 2.1% 1 +[D138H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.565 1368 25 1.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.565 1368 21 1.5% 1 +[E309Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.35 1366 1053 77.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.35 1366 35 2.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.35 1366 31 2.3% 1 +[H69-,V70-,F157L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.35 1366 23 1.7% 1 +[H69-,V70-,V213G,A260T,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.35 1366 19 1.4% 1 +[H69-,V70-,G184D,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] FL.2.3 1365 788 57.7% 0 (consensus) FL.2.3 1365 218 16.0% 1 +[H146K]-[H146Q] FL.2.3 1365 23 1.7% 1 +[V642G] FL.2.3 1365 19 1.4% 1 +[F456L] FL.2.3 1365 17 1.2% 2 +[H146K,P521S]-[H146Q] AY.62 1360 618 45.4% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.62 1360 334 24.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.62 1360 36 2.6% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,N978S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.62 1360 33 2.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,G946V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.62 1360 32 2.4% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.29 1347 631 46.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.29 1347 109 8.1% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.29 1347 27 2.0% 1 +[D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.29 1347 19 1.4% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.36.29 1347 14 1.0% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.10 1346 966 71.8% 0 +[F456L] (consensus) XBB.1.5.10 1346 38 2.8% 1 +[F456L,I569V] XBB.1.5.10 1346 34 2.5% 1 +[F456L]-[K417N] XBB.1.5.10 1346 28 2.1% 1 +[H146K,F456L]-[H146Q] XBB.1.5.10 1346 27 2.0% 1 +[L8F,F456L] B.1.232 1345 664 49.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.232 1345 402 29.9% 1 +[L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.232 1345 63 4.7% 1 +[R346K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.232 1345 36 2.7% 1 +[A475S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.232 1345 9 0.7% 2 +[L452R,G639S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BG.5 1345 1090 81.0% 0 +[V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BG.5 1345 37 2.8% 1 +[V213G,G339D,L452Q,Q493R,S704L,T1077A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BG.5 1345 35 2.6% 1 +[F32L,V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BG.5 1345 22 1.6% 1 +[F157L,V213G,G339D,L452Q,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BG.5 1345 12 0.9% 1 +[V213G,G339D,L452Q,Q493R,S704L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.1.4 1345 1207 89.7% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.4 1345 32 2.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.4 1345 13 1.0% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.4 1345 11 0.8% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.4 1345 10 0.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,H625R,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] EG.6.1 1333 861 64.6% 0 +[F456L] (consensus) EG.6.1 1333 71 5.3% 1 +[F456L]-[R408S] EG.6.1 1333 33 2.5% 1 +[F456L,C1236F] EG.6.1 1333 27 2.0% 1 +[H146K,F456L]-[H146Q] EG.6.1 1333 20 1.5% 1 +[F456L,V705I] BQ.1.1.51 1328 872 65.7% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.51 1328 124 9.3% 1 +[H69-,V70-,W152R,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.51 1328 55 4.1% 1 +[H69-,V70-,S98F,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.51 1328 30 2.3% 1 +[H69-,V70-,V213G,T250I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.51 1328 24 1.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AY.68 1326 675 50.9% 0 +[T19R,E156G,F157-,R158-,A222V,D253A,L452R,P681R,D950N,D979E]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.68 1326 219 16.5% 1 +[T19R,E156G,F157-,R158-,A222V,D253A,L452R,P681R,D950N,D979E]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.68 1326 53 4.0% 1 +[T19R,E156G,F157-,R158-,A222V,D253A,L452R,P681R,P809S,D950N,D979E]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.68 1326 33 2.5% 1 +[T19R,E156G,F157-,R158-,A222V,D253A,L452R,P681R,G885S,D950N,D979E]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.68 1326 31 2.3% 1 +[T19R,E156G,F157-,R158-,N211K,A222V,D253A,L452R,P681R,D950N,D979E]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.31 1322 964 72.9% 0 (consensus) XBB.1.5.31 1322 48 3.6% 1 +[M153V] XBB.1.5.31 1322 17 1.3% 1 +[H146K]-[H146Q] XBB.1.5.31 1322 17 1.3% 1 +[D1153Y] XBB.1.5.31 1322 12 0.9% 1 -[K417N] Q.2 1320 958 72.6% 0 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) Q.2 1320 58 4.4% 1 +[H69-,V70-,P272L,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.2 1320 50 3.8% 1 +[H69-,V70-,H245Y,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.2 1320 49 3.7% 2 +[A67V,H69-,V70-,A570D,T716I,I794T,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.2 1320 38 2.9% 1 +[H69-,V70-,A570D,T716I,I794T,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.177.54 1315 1082 82.3% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.54 1315 51 3.9% 1 +[L176F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.54 1315 19 1.4% 1 +[A222V,L1063F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.54 1315 18 1.4% 2 +[A222V,T859I,V860I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.54 1315 14 1.1% 1 +[A222V,S813I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FY.3 1313 984 74.9% 0 +[Y200C] (consensus) FY.3 1313 24 1.8% 1 +[H146K,Y200C]-[H146Q] FY.3 1313 13 1.0% 2 +[H69-,V70-,Y200C] FY.3 1313 9 0.7% 1 +[L5F,Y200C] FY.3 1313 8 0.6% 1 +[Y200C]-[R408S] BN.1.2.3 1311 871 66.4% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.2.3 1311 35 2.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,N481K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.3 1311 32 2.4% 1 +[K147E,W152R,F157L,K187E,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.3 1311 27 2.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,E1111Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.3 1311 21 1.6% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] AY.7.2 1310 566 43.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.7.2 1310 397 30.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7.2 1310 39 3.0% 1 +[V16F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7.2 1310 21 1.6% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.7.2 1310 19 1.5% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,G1219C,M1237I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.90 1304 881 67.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.90 1304 213 16.3% 1 +[T19R,E156G,F157-,R158-,P174S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.90 1304 26 2.0% 2 +[T19R,E156G,F157-,R158-,P174S,L452R,P681R,D950N,V1122L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.90 1304 23 1.8% 1 +[V16I,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.90 1304 16 1.2% 1 +[T19R,E156G,F157-,R158-,S256L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.61 1300 896 68.9% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.61 1300 121 9.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.61 1300 42 3.2% 1 +[T19R,P85S,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.61 1300 17 1.3% 2 +[T19R,P85S,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.61 1300 14 1.1% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,C1235F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.65 1299 456 35.1% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.65 1299 268 20.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.65 1299 59 4.5% 2 +[T19R,E156G,F157-,R158-,A222V,D228H,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.65 1299 51 3.9% 4 +[L5F,T19R,E156G,F157-,R158-,A222V,L452R,P681R,P809S,D950N,V1176F,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.65 1299 43 3.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.75.5 1292 751 58.1% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] (consensus) BA.2.75.5 1292 56 4.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.75.5 1292 45 3.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,R346S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.2.75.5 1292 43 3.3% 2 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,F490V,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.2.75.5 1292 24 1.9% 4 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] AY.46.3 1292 573 44.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46.3 1292 190 14.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.3 1292 115 8.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.3 1292 46 3.6% 1 +[T19R,W64C,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.3 1292 20 1.5% 2 +[T19R,W64C,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.291 1283 1121 87.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.291 1283 28 2.2% 1 +[Q52L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.291 1283 13 1.0% 1 +[Q580K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.291 1283 11 0.9% 1 +[L54F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.291 1283 11 0.9% 1 +[M1229I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.369 1283 1052 82.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.369 1283 54 4.2% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.369 1283 30 2.3% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.369 1283 22 1.7% 2 +[L18F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.369 1283 16 1.2% 1 +[T859I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] GE.1 1279 667 52.2% 0 +[N185I,F186-,D253G,T478R,P521S]-[G252V,T478K] (consensus) GE.1 1279 72 5.6% 1 +[N185I,F186-,D253G,T478R,P521S,T732I]-[G252V,T478K] GE.1 1279 39 3.0% 1 +[N185I,F186-,D253G,T478R,P521S,E554K]-[G252V,T478K] GE.1 1279 26 2.0% 1 +[M153I,N185I,F186-,D253G,T478R,P521S]-[G252V,T478K] GE.1 1279 25 2.0% 1 +[H146K,N185I,F186-,D253G,T478R,P521S]-[H146Q,G252V,T478K] BA.2.22 1270 1041 82.0% 0 +[F186S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.22 1270 113 8.9% 1 +[F186S,V213G,Y248H,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.22 1270 25 2.0% 1 +[F186S,V213G,G339D,Q493R,A924S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.22 1270 12 0.9% 1 +[F186S,V213G,G339D,Q493R,I1221V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.22 1270 5 0.4% 1 +[L5F,F186S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] HF.1 1268 914 72.1% 0 +[E180V,K304N,T478R]-[T478K] (consensus) HF.1 1268 62 4.9% 2 +[E180V,K304N,T478R,D1084N,H1101Y]-[T478K] HF.1 1268 37 2.9% 1 +[E180V,K304N,T478R,A688V]-[T478K] HF.1 1268 25 2.0% 1 +[H146K,E180V,K304N,T478R]-[H146Q,T478K] HF.1 1268 12 0.9% 1 +[E180V,K304N,T478R]-[K417N,T478K] FD.1.1 1268 914 72.1% 0 +[F456L] (consensus) FD.1.1 1268 29 2.3% 1 +[H146K,F456L]-[H146Q] FD.1.1 1268 27 2.1% 1 +[L5F,F456L] FD.1.1 1268 22 1.7% 1 +[R102G,F456L] FD.1.1 1268 18 1.4% 1 +[F456L,P812L] BN.1.4 1268 967 76.3% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.4 1268 19 1.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,V687L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.4 1268 11 0.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,K444R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.4 1268 10 0.8% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,L1141F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.4 1268 9 0.7% 1 +[T22N,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] XBB.1.5.33 1268 865 68.2% 0 (consensus) XBB.1.5.33 1268 53 4.2% 1 +[R237K] XBB.1.5.33 1268 31 2.4% 1 +[T883I] XBB.1.5.33 1268 26 2.1% 1 +[H146K]-[H146Q] XBB.1.5.33 1268 23 1.8% 1 -[K417N] BA.2.20 1256 1086 86.5% 0 +[N148T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.20 1256 44 3.5% 1 +[I68T,N148T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.20 1256 21 1.7% 1 +[N148T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.20 1256 8 0.6% 1 +[N148T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.20 1256 6 0.5% 1 +[N148T,V213G,G339D,Q493R,S929T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.4 1255 943 75.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.6.4 1255 47 3.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.4 1255 37 2.9% 1 +[H69-,V70-,V213G,G339D,V445F,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.4 1255 11 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,N658S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.4 1255 11 0.9% 1 +[H69-,V70-,V213G,A264T,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12.2 1255 1152 91.8% 0 +[V213G,G339D,R357K,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.12.2 1255 12 1.0% 2 +[V213G,G339D,R357K,Q493R,S704L,N1187D,C1236F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12.2 1255 10 0.8% 1 +[V213G,G339D,R357K,Q493R,S704L,A783V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12.2 1255 6 0.5% 1 +[V213G,G339D,R357K,Q493R,S704L,K1255R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.12.2 1255 5 0.4% 1 +[V213G,S255F,G339D,R357K,Q493R,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.33 1251 885 70.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.33 1251 68 5.4% 1 +[H69-,V70-,K147I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.33 1251 44 3.5% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.33 1251 14 1.1% 2 +[H69-,V70-,K147I,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.33 1251 14 1.1% 6 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.349 1247 812 65.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.349 1247 103 8.3% 1 +[E554D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.349 1247 83 6.7% 1 +[T22N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.349 1247 24 1.9% 1 +[E156V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.349 1247 20 1.6% 1 +[H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.31 1245 933 74.9% 0 +[H69-,V70-,L84I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.31 1245 73 5.9% 1 +[H69-,V70-,L84I,K182N,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.31 1245 70 5.6% 1 +[H69-,V70-,L84I,W152L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.31 1245 10 0.8% 1 +[H69-,V70-,L84I,V213G,G339D,L452R,F486V,T778I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.31 1245 6 0.5% 1 +[L5F,H69-,V70-,L84I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BN.1.3.6 1245 732 58.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3.6 1245 42 3.4% 5 +[K147E,W152R,F157L,+209V,N211G,L212-,V213-,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.6 1245 34 2.7% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.6 1245 33 2.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.6 1245 28 2.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,V1122M]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BQ.1.1.67 1245 862 69.2% 0 +[H69-,V70-,L176F,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.67 1245 52 4.2% 1 +[H69-,V70-,L176F,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.67 1245 30 2.4% 1 +[H69-,V70-,L176F,V213G,G339D,K444M,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.67 1245 26 2.1% 1 +[H69-,V70-,L176F,V213G,G339D,K444T,L452R,F486V,K1154R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.67 1245 20 1.6% 1 +[H69-,V70-,L176F,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.1.63 1242 845 68.0% 0 +[S12F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.63 1242 39 3.1% 1 +[S12F,N148T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.63 1242 24 1.9% 2 +[S12F,N148T,L176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.63 1242 24 1.9% 1 +[S12F,E654K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.63 1242 21 1.7% 1 +[S12F,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.36.3 1240 705 56.9% 0 +[S12F,H69-,V70-,W152R,R346S,L452R,Q677H,A899S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) C.36.3 1240 62 5.0% 1 +[S12F,H69-,V70-,W152R,R346S,L452R,Q677H,A899S,P1162L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.36.3 1240 20 1.6% 1 +[S12F,S13I,H69-,V70-,W152R,R346S,L452R,Q677H,A899S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.36.3 1240 17 1.4% 1 +[S12F,H69-,V70-,W152R,R346S,L452R,T547I,Q677H,A899S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.36.3 1240 15 1.2% 1 +[S12F,H69-,V70-,W152R,D253Y,R346S,L452R,Q677H,A899S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.64 1240 717 57.8% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.64 1240 272 21.9% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.64 1240 44 3.5% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,A701S,D950N,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.64 1240 15 1.2% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.64 1240 12 1.0% 2 +[T19R,E156G,F157-,R158-,F186L,A222V,T385I,L452R,P681R,D950N,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.70 1237 1000 80.8% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.70 1237 15 1.2% 1 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.70 1237 15 1.2% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.70 1237 12 1.0% 1 +[T19L,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.70 1237 11 0.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] XBB.1.5.16 1227 798 65.0% 0 (consensus) XBB.1.5.16 1227 41 3.3% 1 +[S704L] XBB.1.5.16 1227 30 2.4% 1 +[F456L] XBB.1.5.16 1227 23 1.9% 1 +[H146K]-[H146Q] XBB.1.5.16 1227 23 1.9% 1 +[E661D] BA.2.68 1227 1016 82.8% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.68 1227 25 2.0% 1 +[F157L,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.68 1227 22 1.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.68 1227 17 1.4% 2 +[V213G,G339D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,Q498R] BA.2.68 1227 9 0.7% 1 +[F157S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.157 1226 684 55.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.157 1226 160 13.1% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.157 1226 68 5.5% 2 +[S691P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.157 1226 63 5.1% 1 +[L585F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.157 1226 44 3.6% 1 +[V70A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.2.3.11 1224 500 40.8% 0 +[D253G,T478R,P521S]-[G252V,T478K] (consensus) XBB.2.3.11 1224 199 16.3% 1 +[N185D,D253G,T478R,P521S]-[G252V,T478K] XBB.2.3.11 1224 42 3.4% 1 +[R190S,D253G,T478R,P521S]-[G252V,T478K] XBB.2.3.11 1224 27 2.2% 1 +[D253G,T478R,P521S,A845S]-[G252V,T478K] XBB.2.3.11 1224 26 2.1% 1 +[D253G,T470N,T478R,P521S]-[G252V,T478K] BF.3 1220 731 59.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.3 1220 101 8.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I,A1020S]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.3 1220 65 5.3% 1 +[H69-,V70-,E180V,V213G,G339D,L452R,F486V,T547I,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.3 1220 34 2.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I,A1020S,C1250F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.3 1220 27 2.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I,A570S,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.75.1 1218 649 53.3% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] (consensus) BA.2.75.1 1218 49 4.0% 4 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.2.75.1 1218 39 3.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.75.1 1218 15 1.2% 3 +[K147E,W152R,F157L,N185-,F186-,I210V,V213G,G257S,R346I,D574V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.2.75.1 1218 15 1.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P,F490S] BA.5.2.47 1216 946 77.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.47 1216 31 2.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.47 1216 30 2.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.47 1216 20 1.6% 1 +[H69-,V70-,W152L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.47 1216 6 0.5% 2 +[H69-,V70-,V213G,G339D,L452R,V483A,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.1 1216 1051 86.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.5.1 1216 16 1.3% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.1 1216 16 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,K854R,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.1 1216 14 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.5.1 1216 13 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A653V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.6 1211 985 81.3% 0 +[H69-,V70-,G181A,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.6 1211 17 1.4% 1 +[H69-,V70-,G181A,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.6 1211 16 1.3% 1 +[H69-,V70-,G181A,V213G,G339D,L452R,F486V,T732I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.6 1211 13 1.1% 1 +[H69-,V70-,G181A,V213G,G339D,L452R,F486V,R1107S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.6 1211 12 1.0% 1 +[H69-,V70-,G181A,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.147 1208 1061 87.8% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.147 1208 43 3.6% 1 +[S255F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.147 1208 23 1.9% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.147 1208 8 0.7% 1 +[W152R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.147 1208 6 0.5% 2 +[A694V,V1230L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.67 1205 567 47.1% 0 +[T19R,E156G,F157-,R158-,A222V,A262S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.67 1205 186 15.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.67 1205 110 9.1% 1 +[T19R,E156G,F157-,R158-,A222V,A262S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.67 1205 67 5.6% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.67 1205 41 3.4% 2 +[T19R,E156G,F157-,R158-,A222V,A348S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.77 1204 808 67.1% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.77 1204 223 18.5% 1 +[A222V,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.77 1204 26 2.2% 1 +[S98F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.77 1204 15 1.2% 1 +[A222V,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.77 1204 14 1.2% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.16 1201 1052 87.6% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.16 1201 17 1.4% 1 +[A27V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.16 1201 16 1.3% 1 +[A222V,S659L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.16 1201 12 1.0% 1 +[M153T,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.16 1201 9 0.7% 1 +[L5F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.35 1199 816 68.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) C.35 1199 48 4.0% 1 +[G72R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.35 1199 22 1.8% 1 +[T29I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.35 1199 19 1.6% 2 +[G769R,D1084G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.35 1199 19 1.6% 1 +[T22I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.2 1198 595 49.7% 0 +[T478R]-[T478K] (consensus) EG.2 1198 65 5.4% 1 +[T478R,I742V]-[T478K] EG.2 1198 41 3.4% 1 +[K304N,T478R]-[T478K] EG.2 1198 41 3.4% 1 +[K356T,T478R]-[T478K] EG.2 1198 30 2.5% 1 +[T478R]-[K417N,T478K] B.1.241 1198 560 46.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.241 1198 85 7.1% 1 +[V90F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.241 1198 62 5.2% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.241 1198 56 4.7% 3 +[V6I,D138Y,I197V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.241 1198 51 4.3% 2 +[Q677H,V1128I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.16.2 1196 795 66.5% 0 +[E180V,T478R]-[T478K] (consensus) XBB.1.16.2 1196 50 4.2% 1 +[H146K,E180V,T478R]-[H146Q,T478K] XBB.1.16.2 1196 30 2.5% 1 +[E180V,T478R]-[K417N,T478K] XBB.1.16.2 1196 24 2.0% 1 +[L5I,E180V,T478R]-[T478K] XBB.1.16.2 1196 15 1.3% 1 +[E180V,N317S,T478R]-[T478K] XBB 1196 508 42.5% 0 +[F486S]-[G252V,F486P] (consensus) XBB 1196 20 1.7% 1 +[H146K,F486S]-[H146Q,G252V,F486P] XBB 1196 18 1.5% 1 +[F486S]-[G252V,K417N,F486P] XBB 1196 16 1.3% 1 +[F486S]-[T19I,G252V,F486P] XBB 1196 16 1.3% 5 +[F486S]-[L24-,P25-,P26-,A27S,Y144-,G252V,F486P] B.1.177.87 1196 633 52.9% 0 +[A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.87 1196 172 14.4% 1 +[A222V,A262S,P272L,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.87 1196 102 8.5% 1 +[T19K,A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.87 1196 54 4.5% 1 +[L5F,A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.87 1196 44 3.7% 2 +[L176F,A222V,A262S,P272L,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.396 1195 862 72.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.396 1195 40 3.3% 1 +[Y612F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.396 1195 31 2.6% 1 +[S98F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.396 1195 16 1.3% 1 +[E1262D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.396 1195 14 1.2% 1 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.6 1191 715 60.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.6 1191 159 13.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.6 1191 50 4.2% 1 +[H69-,V70-,G184V,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.6 1191 35 2.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,K1154R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.6 1191 28 2.4% 1 +[H69-,V70-,V213G,T307I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BA.1.15.2 1188 910 76.6% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,V320I,G339D,S371L,Q493R,G496S,T547K,Q628K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.15.2 1188 30 2.5% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,V320I,G339D,S371L,Q493R,G496S,T547K,Q628K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15.2 1188 19 1.6% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,V320I,G339D,S371L,Q493R,G496S,T547K,Q628K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S] BA.1.15.2 1188 17 1.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,Q628K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.15.2 1188 15 1.3% 4 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,V320I,G339D,S371L,Q493R,G496S,T547K,Q628K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,F486P,F490S,N764K] AY.36.1 1181 759 64.3% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.36.1 1181 165 14.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.36.1 1181 37 3.1% 1 +[T19R,F92I,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.36.1 1181 12 1.0% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.36.1 1181 12 1.0% 2 +[T19R,F92I,T95I,E156G,F157-,R158-,L452R,P681R,D950N,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.3.6 1180 1078 91.4% 0 +[V213G,S255F,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.6 1180 17 1.4% 1 +[V213G,S255F,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.6 1180 6 0.5% 1 +[F2L,V213G,S255F,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.6 1180 5 0.4% 1 +[V213G,S255F,G339D,Q493R,P1263L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.6 1180 5 0.4% 1 +[L5F,V213G,S255F,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.6 1176 1025 87.2% 0 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.1.6 1176 20 1.7% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,P1079S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.6 1176 19 1.6% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.1.6 1176 15 1.3% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.4.1.6 1176 8 0.7% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,A958S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.564 1174 481 41.0% 0 +[E780Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.564 1174 355 30.2% 2 +[H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.564 1174 131 11.2% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.564 1174 55 4.7% 1 +[A522S,E780Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.564 1174 50 4.3% 1 +[E780Q,T859I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.14 1169 864 73.9% 0 +[W64L,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.14 1169 190 16.3% 4 +[W64L,V213G,G339D,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.14 1169 20 1.7% 1 +[W64L,V213G,G339D,N450D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.14 1169 10 0.9% 1 +[W64L,V213G,G339D,Q493R,V534L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.14 1169 9 0.8% 1 +[W64L,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] XBB.2 1168 719 61.6% 0 +[D253G,F486S]-[G252V,F486P] (consensus) XBB.2 1168 18 1.5% 1 +[H146K,D253G,F486S]-[H146Q,G252V,F486P] XBB.2 1168 15 1.3% 1 +[D253G,F486S]-[Y144-,G252V,F486P] XBB.2 1168 11 0.9% 1 +[L5F,D253G,F486S]-[G252V,F486P] XBB.2 1168 11 0.9% 1 +[D253G,F486S]-[G252V,R408S,F486P] B.1.177.73 1166 653 56.0% 0 +[A222V,Q1071L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.73 1166 177 15.2% 1 +[L5F,A222V,Q1071L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.73 1166 72 6.2% 1 +[S98F,A222V,Q1071L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.73 1166 43 3.7% 1 +[T95I,A222V,Q1071L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.73 1166 13 1.1% 2 +[S98F,D215Y,A222V,Q1071L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617 1165 402 34.5% 0 +[E154K,L452R,E484Q,P681R,Q1071H,H1101D]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.617 1165 109 9.4% 3 +[E154K,V382L,L452R,E484Q,P681R,Q1071H,D1153Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617 1165 97 8.3% 1 +[E154K,Q218H,L452R,E484Q,P681R,Q1071H,H1101D]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617 1165 50 4.3% 1 +[E154K,L452R,E484Q,P681R,Q1071H,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.617 1165 49 4.2% 1 +[L452R,E484Q,P681R,Q1071H,H1101D]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.2 1164 325 27.9% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46.2 1164 200 17.2% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.2 1164 76 6.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,P809S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.2 1164 71 6.1% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,P809S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.2 1164 50 4.3% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.2 1163 617 53.1% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,T859I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.34.2 1163 315 27.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,T859I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.2 1163 21 1.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,T859I,D950N,D1259H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.2 1163 16 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,T859I,D950N,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.34.2 1163 14 1.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q677H,P681R,T859I,D950N,M1237I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CK.1 1156 600 51.9% 0 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) CK.1 1156 111 9.6% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.1 1156 47 4.1% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,F486P,F490S] CK.1 1156 33 2.9% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,Q613H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.1 1156 20 1.7% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,D1118V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.2.32 1154 872 75.6% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.32 1154 85 7.4% 1 +[W64R,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.32 1154 51 4.4% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.32 1154 14 1.2% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.32 1154 6 0.5% 2 +[V213G,G339D,Q493R]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] AY.109 1153 431 37.4% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.109 1153 143 12.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.109 1153 139 12.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,H1058Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.109 1153 83 7.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,E484K,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.109 1153 66 5.7% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,S698L,D950N,H1058Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.1.2 1152 727 63.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.2 1152 57 4.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.2 1152 28 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.1.2 1152 18 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A653V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.2 1152 15 1.3% 1 +[H69-,V70-,V213G,T284I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.50 1150 324 28.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.50 1150 87 7.6% 1 +[N481K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.50 1150 66 5.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.50 1150 58 5.0% 2 -[T19I,L24-,P25-,P26-,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.50 1150 47 4.1% 2 +[A67S,E96Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.31 1149 616 53.6% 0 +[H69-,V70-,V213G,S256L,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.31 1149 265 23.1% 1 +[H69-,V70-,V213G,S256L,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.31 1149 20 1.7% 1 +[H69-,V70-,V213G,S256L,G339D,K444T,L452R,F486V,I1232S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.31 1149 19 1.7% 1 +[H69-,V70-,V213G,S256L,G339D,K444T,L452R,V483I,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.31 1149 14 1.2% 2 +[H69-,V70-,V213G,S256L,G339D,K444T,L452R,F486V,E1144Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.139 1149 809 70.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.139 1149 80 7.0% 2 +[T941A,M1229L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.139 1149 37 3.2% 1 +[A520S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.139 1149 33 2.9% 1 +[G252D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.139 1149 22 1.9% 1 +[T618I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.15 1147 936 81.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.15 1147 119 10.4% 1 +[V16F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.15 1147 35 3.1% 1 +[T19R,T95I,E156G,F157-,R158-,S161F,L452R,P681R,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.15 1147 5 0.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,A1078S,T1238A]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.15 1147 5 0.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,A1078S,Q1208H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.2 1144 871 76.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.2 1144 40 3.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.2 1144 26 2.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.2 1144 18 1.6% 1 +[H69-,V70-,L176F,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.2 1144 9 0.8% 1 +[H69-,V70-,V213G,T240I,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.46.1 1143 787 68.9% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.46.1 1143 82 7.2% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.1 1143 73 6.4% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.1 1143 25 2.2% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,D1127Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.46.1 1143 16 1.4% 1 +[T19R,P85L,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.4.7 1142 931 81.5% 0 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.7 1142 19 1.7% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V,N658S,D1163N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.7 1142 17 1.5% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.7 1142 15 1.3% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.4.7 1142 15 1.3% 1 +[L5F,H69-,V70-,V213G,G339D,R346S,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BL.1 1138 731 64.2% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BL.1 1138 24 2.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V,S680F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BL.1 1138 22 1.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P,F490S] BL.1 1138 15 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BL.1 1138 15 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,D574V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.2.26 1134 993 87.6% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.26 1134 34 3.0% 1 +[V213G,G339D,Q493R,G1267R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.26 1134 9 0.8% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.26 1134 9 0.8% 1 +[V213G,G339D,Q493R,C1236F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.26 1134 7 0.6% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.277 1133 506 44.7% 0 +[A626S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.277 1133 181 16.0% 1 +[A626S,E654Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.277 1133 122 10.8% 1 +[A626S,E1195Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.277 1133 97 8.6% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.277 1133 36 3.2% 1 +[H49Y,A626S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.12 1132 518 45.8% 0 +[T323I] (consensus) XBB.1.5.12 1132 168 14.8% 1 XBB.1.5.12 1132 30 2.7% 1 +[T323I]-[K417N] XBB.1.5.12 1132 17 1.5% 1 +[H146K,T323I]-[H146Q] XBB.1.5.12 1132 12 1.1% 3 -[R408S,S477N] BA.5.2.8 1132 961 84.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.8 1132 18 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.2.8 1132 17 1.5% 1 +[H69-,V70-,E180G,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.8 1132 15 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.8 1132 7 0.6% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.221.3 1131 873 77.2% 0 +[S98F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.221.3 1131 70 6.2% 1 +[H49Y,S98F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.221.3 1131 64 5.7% 1 +[S98F,V1065L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.221.3 1131 51 4.5% 1 +[S98F,A846V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.221.3 1131 24 2.1% 1 +[S98F,S494P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.4 1128 797 70.7% 0 +[T883I] (consensus) XBB.1.5.4 1128 22 2.0% 1 +[T883I]-[K417N] XBB.1.5.4 1128 17 1.5% 1 +[S704L,T883I] XBB.1.5.4 1128 15 1.3% 1 +[H146K,T883I]-[H146Q] XBB.1.5.4 1128 15 1.3% 1 +[T547I,T883I] B.1.1.348 1121 449 40.1% 0 +[G1167A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.348 1121 133 11.9% 1 +[A879S,G1167A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.348 1121 72 6.4% 2 +[R346K,G1167A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.348 1121 68 6.1% 1 +[V289I,G1167A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.348 1121 50 4.5% 1 +[A348S,G1167A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.15 1117 856 76.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.15 1117 43 3.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.15 1117 36 3.2% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S1252Y]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.15 1117 18 1.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.15 1117 12 1.1% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q675K]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] DV.1.1 1110 818 73.7% 0 +[K147E,W152R,F157L,L176F,N185D,I210V,V213G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) DV.1.1 1110 31 2.8% 1 +[K147E,W152R,F157L,L176F,L179P,N185D,I210V,V213G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.1.1 1110 22 2.0% 1 +[K147E,W152R,F157L,L176F,N185D,I210V,V213G,G257S,K444T,L452R,F486S,Q613H,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.1.1 1110 17 1.5% 2 +[K147E,W152R,F157L,L176F,N185D,I210V,V213G,G257S,A344T,K444T,L452R,F486S,A522S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.1.1 1110 14 1.3% 1 +[N30S,K147E,W152R,F157L,L176F,N185D,I210V,V213G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.1.416 1098 794 72.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.416 1098 24 2.2% 1 +[T95I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.416 1098 21 1.9% 1 +[P330S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.416 1098 14 1.3% 1 +[T1117I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.416 1098 13 1.2% 2 +[L18F,R408I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.409 1087 877 80.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.409 1087 27 2.5% 1 +[A520S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.409 1087 13 1.2% 1 +[D80Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.409 1087 12 1.1% 1 +[H1088R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.409 1087 10 0.9% 1 +[T29I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.56 1085 816 75.2% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.56 1085 84 7.7% 1 +[A222V,P809L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.56 1085 25 2.3% 1 +[D138H,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.56 1085 22 2.0% 1 +[A222V,S255F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.56 1085 16 1.5% 1 +[I119V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.7.23 1081 884 81.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.23 1081 31 2.9% 1 +[V3I,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.23 1081 23 2.1% 1 +[T19L,H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.23 1081 18 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.23 1081 10 0.9% 2 +[H69-,V70-,V213G,T323I,G339D,L452R,F486V,A688V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CH.1.1.11 1081 752 69.6% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.11 1081 40 3.7% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.11 1081 23 2.1% 2 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T883I,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.11 1081 14 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,P322A,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.11 1081 10 0.9% 1 +[K147E,W152R,F157L,M177T,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.426 1081 841 77.8% 0 +[D253G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.426 1081 38 3.5% 1 +[D253G,T719I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.426 1081 26 2.4% 2 +[D253G,A263T,V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.426 1081 24 2.2% 1 +[H49Y,D253G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.426 1081 19 1.8% 1 +[L5F,D253G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.329 1080 1052 97.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.329 1080 3 0.3% 1 +[A163V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.329 1080 3 0.3% 1 +[N17D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.329 1080 2 0.2% 1 +[L849F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.329 1080 2 0.2% 1 +[H69Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.1 1075 443 41.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.99.1 1075 226 21.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.1 1075 42 3.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.1 1075 29 2.7% 2 +[T19R,E156G,F157-,R158-,D427G,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.99.1 1075 19 1.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17.1 1074 1011 94.1% 0 +[L18F,T20N,P26S,H49Y,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.17.1 1074 12 1.1% 1 +[L18F,T20N,P26S,H49Y,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17.1 1074 6 0.6% 1 +[L18F,T20N,P26S,H49Y,D138Y,R190S,K417T,E484K,A879S,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17.1 1074 5 0.5% 1 +[L18F,T20N,P26S,H49Y,D138Y,R190S,K417T,E484K,T523N,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.17.1 1074 5 0.5% 1 +[V3A,L18F,T20N,P26S,H49Y,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.5.1.4 1073 807 75.2% 0 +[Q52H,F456L] (consensus) EG.5.1.4 1073 38 3.5% 1 +[Q52H,L455F,F456L] EG.5.1.4 1073 28 2.6% 1 +[Q52H,F456L,V483I] EG.5.1.4 1073 23 2.1% 1 +[Q52H,H146K,F456L]-[H146Q] EG.5.1.4 1073 8 0.7% 1 +[Q52H,F456L,F490P]-[F490S] XBB.1.5.18 1073 731 68.1% 0 (consensus) XBB.1.5.18 1073 34 3.2% 2 +[W152R,T478R]-[T478K] XBB.1.5.18 1073 19 1.8% 2 +[F456L,Q675K] XBB.1.5.18 1073 14 1.3% 1 +[N856S] XBB.1.5.18 1073 13 1.2% 4 +[W152R,T478R,E554Q,D1184Y]-[T478K] BA.5.2.44 1068 614 57.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.44 1068 101 9.5% 2 +[H69-,V70-,N185D,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.44 1068 46 4.3% 3 +[H69-,V70-,N185D,V213G,G339D,L452R,F486V,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.44 1068 37 3.5% 1 +[T19L,H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.44 1068 31 2.9% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.1.52 1057 527 49.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.52 1057 229 21.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.52 1057 61 5.8% 2 +[H69-,V70-,V213G,H245Y,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.52 1057 15 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T732I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.52 1057 15 1.4% 1 +[H69-,V70-,V213G,G339D,K417T,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] BF.7.24 1054 710 67.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.24 1054 56 5.3% 1 +[T19L,H69-,V70-,V213G,G339D,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.24 1054 48 4.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,L1197F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.24 1054 16 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S691P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.24 1054 14 1.3% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] AY.43.2 1054 597 56.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.2 1054 179 17.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.2 1054 107 10.2% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.2 1054 16 1.5% 1 +[T19R,E156G,F157-,R158-,L452R,E471Q,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.2 1054 8 0.8% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.15 1053 831 78.9% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.15 1053 38 3.6% 1 +[S12F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.15 1053 34 3.2% 1 +[A222V,T859I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.15 1053 23 2.2% 1 +[A222V,A845S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.15 1053 21 2.0% 1 +[A222V,G1167F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CQ.2 1052 913 86.8% 0 +[H69-,V70-,P209L,V213G,G339D,K444R,V445A,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) CQ.2 1052 18 1.7% 1 +[H69-,V70-,P209L,V213G,G339D,K444R,V445A,L452R,F486A]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CQ.2 1052 15 1.4% 1 +[H69-,V70-,P209L,V213G,G339D,K444R,V445A,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,N460K,F486P,F490S] CQ.2 1052 10 1.0% 1 +[H69-,V70-,P209L,V213G,G339D,K444R,V445A,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,N460K,F486P,F490S] CQ.2 1052 7 0.7% 1 +[H69-,V70-,P209L,V213G,G339D,K444R,V445A,L452R,F486V,S940F]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.1.10 1051 915 87.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.10 1051 18 1.7% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.10 1051 10 1.0% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.10 1051 9 0.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,S691P,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.10 1051 8 0.8% 2 +[A67V,H69-,V70-,T95I,V143-,Y145-,M177I,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,D1163G]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AZ.2 1047 826 78.9% 0 +[T95I,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) AZ.2 1047 36 3.4% 1 +[T95I,G252S,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AZ.2 1047 19 1.8% 1 +[L5F,T95I,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AZ.2 1047 19 1.8% 2 +[T95I,E484K,Q607K,D796H,S875A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AZ.2 1047 10 1.0% 2 +[T95I,G252S,E484K,S640F,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] P.1.4 1044 870 83.3% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.4 1044 24 2.3% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,R646H,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] P.1.4 1044 13 1.2% 2 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,A520S,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.4 1044 9 0.9% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,V622F,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] P.1.4 1044 9 0.9% 1 +[L18F,T20N,P26S,D138Y,R190S,G257D,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] AY.120.2.1 1041 716 68.8% 0 +[T19R,H66Y,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.120.2.1 1041 142 13.6% 1 +[T19R,H66Y,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.2.1 1041 83 8.0% 1 +[T19R,H66Y,T95I,E156G,F157-,R158-,L452R,P681R,D950N,M1050I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.2.1 1041 12 1.2% 1 +[T19R,H66Y,T95I,E156G,F157-,R158-,L452R,A522S,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.120.2.1 1041 10 1.0% 1 +[T19R,H66Y,T95I,E156G,F157-,R158-,L452R,P681R,S810A,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.11 1040 667 64.1% 0 (consensus) XBB.1.5.11 1040 32 3.1% 1 +[H146K]-[H146Q] XBB.1.5.11 1040 20 1.9% 1 +[S704L] XBB.1.5.11 1040 18 1.7% 1 +[T883I] XBB.1.5.11 1040 13 1.2% 1 -[K417N] BQ.1.2.1 1040 793 76.2% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.2.1 1040 72 6.9% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2.1 1040 17 1.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V,D1139H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.2.1 1040 11 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.2.1 1040 7 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I666V,C1235F]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] AY.43.3 1039 627 60.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.3 1039 170 16.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.3 1039 42 4.0% 1 +[T19R,E156G,F157-,R158-,V367L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.3 1039 25 2.4% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.3 1039 14 1.3% 2 +[T19R,E156G,F157-,R158-,V367L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.372 1038 702 67.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.372 1038 192 18.5% 1 +[P26L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.372 1038 9 0.9% 2 +[P26L,T29I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.372 1038 7 0.7% 2 +[P26L,L54F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.372 1038 7 0.7% 1 +[T323I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.42 1032 877 85.0% 0 +[I68T,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.42 1032 28 2.7% 1 +[I68T,R78G,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.42 1032 17 1.6% 1 +[I68T,V213G,G339D,Q493R,M1229I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.42 1032 12 1.2% 1 +[I68T,V213G,G339D,Q493R,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.42 1032 7 0.7% 1 +[I68T,V213G,G339D,Q493R,T778A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.8 1028 807 78.5% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.8 1028 135 13.1% 1 +[L18F,A222V,I794L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.8 1028 5 0.5% 1 +[L18F,A222V,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.8 1028 5 0.5% 2 +[L18F,A222V,I794L,G1085R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.8 1028 4 0.4% 1 +[L18F,A222V,S373L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.7.19.1 1023 887 86.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.19.1 1023 25 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.19.1 1023 18 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1104L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.19.1 1023 10 1.0% 1 +[H69-,V70-,V213G,L244S,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.19.1 1023 6 0.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,S813I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.50 1021 934 91.5% 0 +[T19R,E156G,F157-,R158-,V308L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.50 1021 20 2.0% 1 +[T19R,E156G,F157-,R158-,V308L,L452R,P681R,D950N,V1228I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.50 1021 17 1.7% 1 +[T19R,E156G,F157-,R158-,V308L,L452R,P681R,D950N,G1124V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.50 1021 9 0.9% 1 +[T19R,E156G,F157-,R158-,V308L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.50 1021 3 0.3% 1 +[T19R,E156G,F157-,R158-,V308L,L452R,P681R,D950N,E1144V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.35 1019 439 43.1% 0 +[N978S] (consensus) XBB.1.5.35 1019 171 16.8% 1 +[S98F,N978S] XBB.1.5.35 1019 71 7.0% 1 +[D198G,N978S] XBB.1.5.35 1019 50 4.9% 1 +[N978S]-[K417N] XBB.1.5.35 1019 18 1.8% 1 +[H146K,N978S]-[H146Q] BF.7.22 1019 796 78.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.22 1019 20 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7.22 1019 10 1.0% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.22 1019 9 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S,P681H] BF.7.22 1019 9 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,I1183V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.102 1017 496 48.8% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.102 1017 107 10.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.102 1017 54 5.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.102 1017 33 3.2% 1 +[T19R,T95I,E156G,F157-,R158-,M177I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.102 1017 27 2.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D936Y,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.509 1014 818 80.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.509 1014 22 2.2% 2 +[D215Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.509 1014 14 1.4% 1 +[S98F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.509 1014 11 1.1% 1 +[T22I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.509 1014 10 1.0% 1 +[T76I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.49 1014 480 47.3% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.49 1014 326 32.1% 1 +[L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.49 1014 48 4.7% 1 +[V213G,G339D,Q493R,T732I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.49 1014 22 2.2% 2 +[L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.49 1014 17 1.7% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.12 1013 838 82.7% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.12 1013 14 1.4% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.12 1013 11 1.1% 2 +[V213G,G339D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,Q498R] BA.2.3.12 1013 10 1.0% 1 +[V213G,T286I,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.12 1013 9 0.9% 1 +[V213G,G339D,Q493R,I1225V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.588 1011 748 74.0% 0 +[T20I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.588 1011 28 2.8% 1 +[T20I,A626V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.588 1011 27 2.7% 1 +[T20I,I68L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.588 1011 24 2.4% 1 +[T20I,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.588 1011 15 1.5% 1 +[T20I,P812S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.77 1008 551 54.7% 0 (consensus) XBB.1.5.77 1008 35 3.5% 1 +[H146K]-[H146Q] XBB.1.5.77 1008 15 1.5% 2 +[L84I,T588I] XBB.1.5.77 1008 14 1.4% 1 -[K417N] XBB.1.5.77 1008 13 1.3% 1 -[R408S] GF.1 1007 751 74.6% 0 +[E748V] (consensus) GF.1 1007 30 3.0% 1 +[H146K,E748V]-[H146Q] GF.1 1007 24 2.4% 1 +[R408G,E748V]-[R408S] GF.1 1007 9 0.9% 1 +[E748V]-[K417N] GF.1 1007 8 0.8% 2 +[E748V]-[R408S,S477N] B.1.177.65 1007 771 76.6% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.65 1007 169 16.8% 1 +[L18F,G181V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.65 1007 19 1.9% 2 +[L18F,G75S,G181V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.65 1007 12 1.2% 1 +[L5F,L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.65 1007 4 0.4% 1 +[L18F,A222V,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.17 1006 581 57.8% 0 +[L176F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.17 1006 213 21.2% 1 +[L5F,L176F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.17 1006 59 5.9% 2 +[A222V,A846S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.17 1006 33 3.3% 2 +[L176F,A222V,A1078S,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.17 1006 23 2.3% 1 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.3.15 1006 665 66.1% 0 +[V213G,D215E,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.15 1006 111 11.0% 1 +[V213G,D215E,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.15 1006 45 4.5% 1 +[V213G,D215E,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.3.15 1006 24 2.4% 2 +[V213G,D215E,G339D,Q493R]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.15 1006 20 2.0% 1 +[F157S,V213G,D215E,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.6.2 1002 777 77.5% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.6.2 1002 29 2.9% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.6.2 1002 15 1.5% 3 +[H69-,V70-,N211I,L212G,V213-,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.6.2 1002 11 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.6.2 1002 10 1.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,C1247F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.3 1001 674 67.3% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.3 1001 51 5.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q,V1133A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3 1001 44 4.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3 1001 14 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619Q,T1120I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.3 1001 12 1.2% 1 +[H69-,V70-,W152R,V213G,G339D,K444T,L452R,F486V,E619Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] AY.73 1000 254 25.4% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.73 1000 247 24.7% 1 +[T19R,W152L,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.73 1000 179 17.9% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.73 1000 99 9.9% 1 +[T19R,E156G,F157-,R158-,I210V,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.73 1000 15 1.5% 2 +[T19R,E156G,F157-,R158-,I210V,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.13.1 997 774 77.6% 0 +[V213G,G339D,L452M,Q493R,T941S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.13.1 997 57 5.7% 1 +[V213G,G339D,L452M,Q493R,A892V,T941S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13.1 997 28 2.8% 1 +[V213G,P217S,G339D,L452M,Q493R,T941S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13.1 997 23 2.3% 1 +[V213G,G339D,L452M,Q493R,P812L,T941S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.13.1 997 9 0.9% 1 +[L5F,V213G,G339D,L452M,Q493R,T941S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.51 995 706 71.0% 0 (consensus) XBB.1.5.51 995 54 5.4% 1 +[T478R]-[T478K] XBB.1.5.51 995 23 2.3% 1 +[T29I] XBB.1.5.51 995 21 2.1% 1 +[H146K]-[H146Q] XBB.1.5.51 995 10 1.0% 1 -[K417N] XBB.1.5.21 991 648 65.4% 0 (consensus) XBB.1.5.21 991 27 2.7% 1 +[H146K]-[H146Q] XBB.1.5.21 991 23 2.3% 2 -[R408S,S477N] XBB.1.5.21 991 20 2.0% 1 -[N764K] XBB.1.5.21 991 15 1.5% 1 +[A260S] B.1.422 988 871 88.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.422 988 27 2.7% 1 +[G184S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.422 988 17 1.7% 1 +[P384R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.422 988 10 1.0% 1 +[T1009S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.422 988 7 0.7% 1 +[G257S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] HK.3 985 664 67.4% 0 +[Q52H,L455F,F456L] (consensus) HK.3 985 26 2.6% 1 +[Q52H,S256L,L455F,F456L] HK.3 985 19 1.9% 1 +[Q52H,H146K,L455F,F456L]-[H146Q] HK.3 985 15 1.5% 1 +[Q14K,Q52H,L455F,F456L] HK.3 985 14 1.4% 1 +[Q52H,L455F,F456L,P809S] BA.5.2.49 984 768 78.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.49 984 13 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T883I,D1146Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.49 984 12 1.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T883I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.49 984 10 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T883I,D936Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.49 984 8 0.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.52 984 645 65.5% 0 +[V213G,Y248S,+248GEN,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.52 984 139 14.1% 4 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.52 984 48 4.9% 1 +[V213G,Y248S,+248GEN,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.52 984 8 0.8% 5 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.52 984 8 0.8% 1 +[V213G,Y248S,+248GEN,G339D,Q493R,P1143L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.19 982 722 73.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.19 982 32 3.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,H1058Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.19 982 13 1.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7.19 982 12 1.2% 2 +[H69-,V70-,W152R,V213G,G339D,T430I,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.19 982 11 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S,P681H] P.1.2 974 592 60.8% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.2 974 61 6.3% 1 +[L18F,T20N,P26S,D138Y,R190S,A262S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.2 974 31 3.2% 1 +[L18F,T20N,P26S,D138Y,R190S,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.2 974 18 1.8% 1 +[L18F,T20N,P26S,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.2 974 17 1.7% 2 +[L18F,T20N,P26S,D138Y,R190S,A262S,K417T,E484K,Q675H,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.3 973 740 76.1% 0 (consensus) FL.3 973 32 3.3% 1 +[H1159R] FL.3 973 12 1.2% 1 -[K417N] FL.3 973 11 1.1% 1 +[H146K]-[H146Q] FL.3 973 8 0.8% 1 +[L5F] BA.2.41 968 566 58.5% 0 +[+212T,+213GGG,G339D,Q493R,T1231S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.41 968 182 18.8% 5 +[V213G,G339D,Q493R,T1231S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.41 968 96 9.9% 6 +[V213G,G339D,Q493R,A942S,T1231S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.41 968 11 1.1% 1 +[+212T,+213GGG,G339D,Q493R,T1231S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.41 968 10 1.0% 1 +[+212T,+213GGG,G339D,Q493R,A688V,T1231S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.367 967 712 73.6% 0 +[D80Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.367 967 100 10.3% 1 +[D80Y,V90F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.367 967 33 3.4% 1 +[D80Y,D1118Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.367 967 9 0.9% 1 +[L5F,D80Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.367 967 6 0.6% 1 +[D80Y,I794V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.48 964 365 37.9% 0 +[T19R,K77T,E156G,F157-,R158-,L452R,T547I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.48 964 151 15.7% 1 +[T19R,K77T,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.48 964 102 10.6% 1 +[T19R,K77T,E156G,F157-,R158-,L452R,T547I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.48 964 83 8.6% 1 +[T19R,K77T,E156G,F157-,R158-,L452R,T547I,V622A,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.48 964 49 5.1% 2 +[T19R,K77T,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EU.1.1 963 729 75.7% 0 +[I410V,P521S] (consensus) EU.1.1 963 18 1.9% 1 +[I410V,P521S]-[K417N] EU.1.1 963 17 1.8% 1 +[H146K,I410V,P521S]-[H146Q] EU.1.1 963 16 1.7% 1 +[I410V,S494P,P521S] EU.1.1 963 15 1.6% 1 +[Q14K,I410V,P521S] B.1.177.75 962 224 23.3% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.75 962 168 17.5% 1 +[A222V,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.75 962 159 16.5% 1 +[A222V,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.75 962 107 11.1% 1 +[Y144F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.75 962 32 3.3% 1 +[A222V,M1237I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.42.2 959 660 68.8% 0 +[Q613H] (consensus) XBB.1.42.2 959 53 5.5% 1 +[G181A,Q613H] XBB.1.42.2 959 14 1.5% 1 +[H146K,Q613H]-[H146Q] XBB.1.42.2 959 13 1.4% 1 +[Q613H,T1117I] XBB.1.42.2 959 10 1.0% 1 +[M177I,Q613H] XBB.1.5.67 958 682 71.2% 0 (consensus) XBB.1.5.67 958 23 2.4% 1 +[H146K]-[H146Q] XBB.1.5.67 958 15 1.6% 1 +[G257S] XBB.1.5.67 958 14 1.5% 1 +[T573I] XBB.1.5.67 958 13 1.4% 1 +[V62L] AY.122.3 957 899 93.9% 0 +[T19R,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122.3 957 8 0.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.3 957 7 0.7% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.3 957 3 0.3% 1 +[T19R,N30H,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.3 957 3 0.3% 1 +[T19R,E156G,F157-,R158-,L452R,Q613H,P681R,A684V,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.420 954 337 35.3% 0 +[L18F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.420 954 175 18.3% 1 +[L18F,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.420 954 72 7.5% 2 +[L18F,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.420 954 47 4.9% 2 +[L18F,P26S,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.420 954 47 4.9% 1 +[L18F,H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.2.5 952 685 72.0% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.2.5 952 59 6.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,A520S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.5 952 20 2.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,F565I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.5 952 15 1.6% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,L452R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.5 952 10 1.1% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] CM.2 951 750 78.9% 0 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] (consensus) CM.2 951 14 1.5% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,T478E,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,T478K,E484A,F486P,F490S] CM.2 951 11 1.2% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N448D,N450D,L452M,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] CM.2 951 10 1.1% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] CM.2 951 7 0.7% 1 +[M153T,N164K,V213G,H245N,G257D,A263T,G339D,K444R,N450D,L452M,E484R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,E484A,F486P,F490S] B.1.1.216 950 524 55.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.216 950 23 2.4% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.216 950 17 1.8% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.216 950 16 1.7% 1 +[E484K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.216 950 15 1.6% 1 +[Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] HH.1 944 720 76.3% 0 +[G184V,D253G,P521S]-[G252V] (consensus) HH.1 944 24 2.5% 1 +[H146K,G184V,D253G,P521S]-[H146Q,G252V] HH.1 944 13 1.4% 1 +[G184V,D253G,Q493L,P521S]-[G252V] HH.1 944 10 1.1% 1 +[G184V,D253G,P521S]-[G252V,K417N] HH.1 944 7 0.7% 1 +[G184V,D253G,P521S]-[Y144-,G252V] CJ.1.3 944 728 77.1% 0 +[K147E,W152R,F157L,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] (consensus) CJ.1.3 944 18 1.9% 1 +[R21T,K147E,W152R,F157L,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] CJ.1.3 944 12 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,T547K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] CJ.1.3 944 10 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] CJ.1.3 944 9 1.0% 1 +[K147E,W152R,F157L,D178H,I210V,V213G,G257S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P] AY.35 942 510 54.1% 0 +[T19R,K77T,E156G,F157-,R158-,L452R,E484Q,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.35 942 106 11.3% 1 +[T19R,K77T,E156G,F157-,R158-,L452R,E484Q,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.35 942 78 8.3% 1 +[L5F,T19R,K77T,E156G,F157-,R158-,L452R,E484Q,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.35 942 62 6.6% 1 +[T19R,K77T,E156G,F157-,R158-,L452R,E484Q,P681R,D808E,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.35 942 40 4.2% 2 +[L5F,T19R,K77T,E156G,F157-,R158-,L452R,E484Q,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.1 935 760 81.3% 0 +[T19R,T95I,E156G,F157-,R158-,G446V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.1 935 60 6.4% 1 +[T19R,T95I,E156G,F157-,R158-,G446V,L452R,P681R,D950N,V1122L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.1 935 35 3.7% 1 +[T19R,T95I,E156G,F157-,R158-,G446V,L452R,P681R,D950N,I1221V]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.1 935 6 0.6% 1 +[T19R,T95I,E156G,F157-,R158-,G446V,L452R,P681R,D950N,N969S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.1 935 5 0.5% 2 +[L5F,T19R,T95I,E156G,F157-,R158-,G446V,L452R,P681R,D950N,V1122L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.21 933 653 70.0% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.21 933 27 2.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.21 933 19 2.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.21 933 16 1.7% 1 +[H69-,V70-,K182R,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.21 933 13 1.4% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] None 931 92 9.9% 0 None 931 86 9.2% 15 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] None 931 76 8.2% 17 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] None 931 45 4.8% 2 +[Q52H,F456L] None 931 28 3.0% 44 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] BG.2 929 846 91.1% 0 +[V213G,G339D,L452Q,Q493R,S704L,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BG.2 929 9 1.0% 1 +[V213G,G339D,L452Q,Q493R,S704L,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BG.2 929 7 0.8% 1 +[V213G,G339D,L452Q,Q493R,S704L,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BG.2 929 6 0.6% 1 +[L5F,V213G,G339D,L452Q,Q493R,S704L,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BG.2 929 5 0.5% 1 +[V213G,G339D,L452Q,Q493R,A522P,S704L,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.316 928 345 37.2% 0 +[Q677H,T732S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.316 928 301 32.4% 1 +[Q677H,T732S,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.316 928 48 5.2% 2 +[V213L,Q677H,T732S,E1202Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.316 928 28 3.0% 1 +[T76I,Q677H,T732S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.316 928 28 3.0% 1 +[S94F,Q677H,T732S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.6.1 924 413 44.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.6.1 924 258 27.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.6.1 924 34 3.7% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.6.1 924 19 2.1% 2 +[H69-,V70-,K147I,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.6.1 924 18 1.9% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.63 920 625 67.9% 0 (consensus) XBB.1.5.63 920 35 3.8% 1 +[K1205R] XBB.1.5.63 920 20 2.2% 1 -[T19I] XBB.1.5.63 920 18 2.0% 1 +[H146K]-[H146Q] XBB.1.5.63 920 15 1.6% 1 +[T299I] BA.2.47 908 715 78.7% 0 +[V213G,Y248H,G339D,Q493R,S1261Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.47 908 68 7.5% 2 +[V213G,Y248H,G339D,Q493R,A1020S,P1143S,S1261Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.47 908 57 6.3% 4 +[V213G,Y248H,G339D,Q493R,S1261Y]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.47 908 15 1.7% 1 +[V213G,Y248H,G339D,Q493R,S1261Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.47 908 6 0.7% 1 +[V213G,Y248H,G339D,Q493R,S1261Y]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.122.4 906 482 53.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122.4 906 213 23.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.4 906 16 1.8% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.4 906 12 1.3% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.4 906 10 1.1% 3 +[T19R,H49Y,E156G,F157-,R158-,L452R,Q613H,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.5.2 904 605 66.9% 0 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.5.2 904 101 11.2% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V,Q677H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.2 904 17 1.9% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V,P561S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.2 904 15 1.7% 1 +[H69-,V70-,T76I,V90L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.2 904 11 1.2% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BQ.1.1.24 903 634 70.2% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.24 903 81 9.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.24 903 61 6.8% 2 +[H69-,V70-,N185I,F186-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.24 903 6 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T1117I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.24 903 6 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,P479L,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AY.122.6 903 578 64.0% 0 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.122.6 903 155 17.2% 1 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.6 903 14 1.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.6 903 11 1.2% 1 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,E780D,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.122.6 903 10 1.1% 1 +[T19R,P25T,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.126 901 691 76.7% 0 +[D215Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.126 901 37 4.1% 1 +[D215Y,A1078V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.126 901 31 3.4% 1 +[R78M,D215Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.126 901 29 3.2% 1 +[D215Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.126 901 13 1.4% 1 +[D215Y,A688V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.72 900 448 49.8% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.72 900 187 20.8% 1 +[T19R,E156G,F157-,R158-,F201L,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.72 900 79 8.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.72 900 12 1.3% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.72 900 9 1.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,V1122L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.72 893 604 67.6% 0 +[F456L] (consensus) XBB.1.5.72 893 22 2.5% 1 +[F456L,P812S] XBB.1.5.72 893 18 2.0% 1 +[H146K,F456L]-[H146Q] XBB.1.5.72 893 16 1.8% 1 +[F456L]-[R408S] XBB.1.5.72 893 12 1.3% 1 +[F456L,G946R] BA.2.3.14 892 715 80.2% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.14 892 16 1.8% 2 +[V213G,G339D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,Q498R] BA.2.3.14 892 15 1.7% 1 +[V213G,G339D,Q493R,T1273I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.14 892 11 1.2% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.14 892 9 1.0% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] B.1.389 890 771 86.6% 0 +[T723I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.389 890 16 1.8% 1 +[T723I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.389 890 14 1.6% 1 +[T723I,E1202D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.389 890 9 1.0% 1 +[W258L,T723I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.389 890 5 0.6% 1 +[I472V,T723I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.123 889 470 52.9% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1263L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.123 889 118 13.3% 1 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,D950N,P1263L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.123 889 70 7.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1263L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.123 889 35 3.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,Q1201H,P1263L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.123 889 19 2.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1162S,P1263L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.10 888 658 74.1% 0 +[A222V,A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.10 888 46 5.2% 1 +[A222V,A262S,P809S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.10 888 21 2.4% 2 +[Q52R,A222V,A262S,A688V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.10 888 16 1.8% 1 +[A222V,A262S,H1083Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.10 888 11 1.2% 2 +[A222V,S254P,A262S,P809S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.25 884 730 82.6% 0 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.25 884 19 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.25 884 7 0.8% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V,S704L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.25 884 7 0.8% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V,G1085R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.25 884 6 0.7% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,T478E,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,T478K,F486P,F490S] BA.5.2.25 884 632 71.5% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.25 884 65 7.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.25 884 21 2.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.25 884 15 1.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.25 884 14 1.6% 1 +[H69-,V70-,V213G,G339D,T430I,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] CK.2.1 883 406 46.0% 0 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) CK.2.1 883 223 25.3% 2 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.2.1 883 24 2.7% 1 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.2.1 883 16 1.8% 1 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] CK.2.1 883 14 1.6% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.7 883 765 86.6% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.7 883 9 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.7 883 7 0.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.7 883 6 0.7% 2 +[V6I,H69-,V70-,V213G,G339D,L452R,Y453F,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.7 883 4 0.5% 1 +[H69-,V70-,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.95 881 533 60.5% 0 (consensus) XBB.1.5.95 881 29 3.3% 1 -[K417N] XBB.1.5.95 881 22 2.5% 1 +[E725D] XBB.1.5.95 881 20 2.3% 1 +[T51I] XBB.1.5.95 881 15 1.7% 1 +[L5F] XBB.1.5.52 880 604 68.6% 0 (consensus) XBB.1.5.52 880 24 2.7% 2 +[L176F,T236S] XBB.1.5.52 880 17 1.9% 1 +[T236S] XBB.1.5.52 880 10 1.1% 1 -[K417N] XBB.1.5.52 880 9 1.0% 1 +[W152L] AY.51 878 208 23.7% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.51 878 182 20.7% 2 +[T19R,E156G,F157-,R158-,L452R,A520S,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.51 878 171 19.5% 1 +[T19R,E156G,F157-,R158-,L452R,A520S,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.51 878 95 10.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.51 878 16 1.8% 3 +[T19R,E156G,F157-,R158-,L452R,A520S,P681R,D950N,D1084Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.4 877 734 83.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.4 877 10 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.4 877 9 1.0% 1 +[H69-,V70-,L212S,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.4 877 9 1.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.4 877 8 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BQ.1.6 874 557 63.7% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.6 874 66 7.6% 1 +[H69-,V70-,V213G,D215H,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.6 874 36 4.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,I1130M]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.6 874 33 3.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q1142R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.6 874 20 2.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,F855L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] AY.16 872 337 38.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.16 872 128 14.7% 2 +[T19R,E156G,F157-,R158-,D215H,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.16 872 99 11.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.16 872 33 3.8% 1 +[T19R,E156G,F157-,R158-,S255F,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.16 872 27 3.1% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.1.33 871 680 78.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.33 871 30 3.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.33 871 13 1.5% 1 +[Q14H,H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.33 871 12 1.4% 1 +[H69-,V70-,V213G,S255F,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.33 871 11 1.3% 2 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BN.3.1 870 573 65.9% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,N450D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P] (consensus) BN.3.1 870 40 4.6% 2 +[K147E,W152R,E156-,F157-,I210V,V213G,G257S,K356T,N450D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P] BN.3.1 870 17 2.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,N450D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,R408S,V445P,F486P] BN.3.1 870 13 1.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,N450D,N1187T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P] BN.3.1 870 13 1.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,N450D]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P] AY.3.3 869 589 67.8% 0 +[T19R,V70I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.3.3 869 91 10.5% 1 +[T19R,V70I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.3 869 46 5.3% 1 +[T19R,V70I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N,D1163Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.3 869 24 2.8% 1 +[L5F,T19R,V70I,E156G,F157-,R158-,Q414R,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.3.3 869 8 0.9% 2 +[T19R,V70I,E156G,F157-,R158-,Q414R,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.207 854 402 47.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.207 854 280 32.8% 1 +[E484K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.207 854 12 1.4% 2 +[P85S,E484K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.207 854 8 0.9% 1 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.207 854 7 0.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] P.1.12 854 466 54.6% 0 +[L18F,T20N,P26S,D138Y,R190S,R246G,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.12 854 234 27.4% 2 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.12 854 27 3.2% 1 +[L18F,T20N,P26S,D138Y,R190S,R246G,K417T,E484K,T961M,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] P.1.12 854 11 1.3% 3 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,N536S,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.12 854 7 0.8% 4 +[L5F,L18F,T20N,P26S,D138Y,K150R,R190S,R246G,K417T,E484K,T547I,G769K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,P681H,N764K,D796Y,Q954H,N969K] BA.2.11 854 667 78.1% 0 +[V213G,G339D,L452R,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.11 854 47 5.5% 1 +[V213G,G339D,L452R,Q493R,D1259H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.11 854 19 2.2% 1 +[V213G,G339D,L452R,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.11 854 18 2.1% 1 +[V213G,G339D,L452R,Q493R,L938F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.11 854 13 1.5% 1 +[F157L,V213G,G339D,L452R,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BW.1.1 852 672 78.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486A]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BW.1.1 852 22 2.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486A]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BW.1.1 852 9 1.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486A,P621S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BW.1.1 852 8 0.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486A,Q613H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BW.1.1 852 6 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486A,V635I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] XBB.1.5.73 848 606 71.5% 0 (consensus) XBB.1.5.73 848 19 2.2% 1 +[N1187S] XBB.1.5.73 848 14 1.7% 1 +[F456L] XBB.1.5.73 848 12 1.4% 1 -[Q183E] XBB.1.5.73 848 10 1.2% 2 +[S514F,V687L] B.1.36.8 848 196 23.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.8 848 105 12.4% 1 +[V227L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.8 848 95 11.2% 2 +[M153I,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.8 848 37 4.4% 1 +[L54F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.8 848 31 3.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.8 846 765 90.4% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.8 846 15 1.8% 1 +[T19R,E156G,F157-,R158-,S221L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.8 846 12 1.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,G1251R]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.8 846 7 0.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.8 846 4 0.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,S813I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.35 844 640 75.8% 0 +[H69-,V70-,K147E,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.35 844 33 3.9% 1 +[L5F,H69-,V70-,K147E,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.35 844 13 1.5% 2 +[H69-,V70-,K147E,V213G,G339D,K444T,L452R,F486V,T547K,V687I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.35 844 13 1.5% 1 +[H69-,V70-,K147E,V213G,G339D,I358V,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.35 844 13 1.5% 1 +[H69-,V70-,K147E,V213G,T284I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] FE.1.1 843 598 70.9% 0 +[F456L] (consensus) FE.1.1 843 16 1.9% 1 +[H146K,F456L]-[H146Q] FE.1.1 843 10 1.2% 1 +[F456L,V1228A] FE.1.1 843 10 1.2% 1 +[F456L,E554K] FE.1.1 843 8 0.9% 1 +[L5F,F456L] FE.1.2 841 369 43.9% 0 +[F456L] (consensus) FE.1.2 841 109 13.0% 1 +[F456L]-[R346T] FE.1.2 841 60 7.1% 2 +[F456L]-[R346T,K417N] FE.1.2 841 23 2.7% 1 +[H146K,F456L]-[H146Q] FE.1.2 841 14 1.7% 1 +[F456L]-[K417N] BF.11.1 841 575 68.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.11.1 841 52 6.2% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.1 841 28 3.3% 1 +[Q14R,H69-,V70-,V213G,G339D,L452R,F486V,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.1 841 24 2.9% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.1 841 9 1.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G1124V,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] A.23.1 838 268 32.0% 0 +[F157L,V367F,Q613H,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) A.23.1 838 213 25.4% 1 +[R102I,F157L,V367F,Q613H,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.23.1 838 50 6.0% 1 +[F157L,V367F,Q613H,P681R,P812S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.23.1 838 49 5.8% 2 +[R102I,F157L,V367F,E484K,Q613H,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.23.1 838 35 4.2% 1 +[L141F,F157L,V367F,Q613H,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.6.6 835 710 85.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.6.6 835 17 2.0% 1 +[D1118V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.6.6 835 9 1.1% 1 +[S1249Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.6.6 835 8 1.0% 1 +[D138H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.6.6 835 5 0.6% 1 +[F490L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.12 834 708 84.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.12 834 24 2.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.12 834 6 0.7% 1 +[H69-,V70-,T95I,V213G,G339D,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.12 834 5 0.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486I]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.12 834 5 0.6% 1 +[H69-,V70-,L176F,V213G,G339D,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.153 833 580 69.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.153 833 39 4.7% 1 +[T1120I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.153 833 33 4.0% 1 +[F157L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.153 833 17 2.0% 1 +[L176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.153 833 15 1.8% 1 +[H625Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.2 832 562 67.5% 0 +[K147I,T284I] (consensus) XBB.1.5.2 832 58 7.0% 1 +[T284I] XBB.1.5.2 832 22 2.6% 1 +[K147I,V213D,T284I]-[V213E] XBB.1.5.2 832 14 1.7% 1 +[K147I,T284I,K558N] XBB.1.5.2 832 12 1.4% 1 +[K147I,T284I,S494P] BQ.1.1.47 832 486 58.4% 0 +[H69-,V70-,K147I,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.47 832 51 6.1% 2 +[H69-,V70-,K147I,V213G,G339D,K444T,L452R,F486V,T523N,D1165N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.47 832 33 4.0% 1 +[H69-,V70-,K147I,W152L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.47 832 13 1.6% 1 +[H69-,V70-,K147I,V213G,G339D,K444T,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.47 832 12 1.4% 1 +[H69-,V70-,K147I,W152R,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.619 830 525 63.3% 0 +[I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.619 830 53 6.4% 1 +[I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.619 830 51 6.1% 1 +[I210T,E484K,A879S,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.619 830 34 4.1% 1 +[L5F,I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.619 830 14 1.7% 1 +[I128V,I210T,E484K,D936N,S939F,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.371 826 744 90.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.371 826 15 1.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.371 826 14 1.7% 1 +[P812L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.371 826 14 1.7% 1 +[L922F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.371 826 7 0.8% 1 +[S929I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.84 825 340 41.2% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.84 825 275 33.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.84 825 29 3.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.84 825 13 1.6% 2 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.84 825 11 1.3% 2 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BY.1 823 517 62.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BY.1 823 19 2.3% 4 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BY.1 823 17 2.1% 1 +[K147E,W152R,F157L,I210V,N211T,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BY.1 823 14 1.7% 2 +[K147E,W152R,F157L,I210V,N211T,V213G,G257S,F486S,A522S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BY.1 823 14 1.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452Q,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] AY.43.1 823 472 57.4% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.1 823 120 14.6% 1 +[T19R,E156G,F157-,R158-,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.1 823 80 9.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.1 823 33 4.0% 1 +[T19R,S98F,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.1 823 7 0.9% 2 +[T19R,S98F,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CH.1.1.24 814 486 59.7% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.24 814 31 3.8% 2 +[S71P,K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,Q1180K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.24 814 30 3.7% 2 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T572I,D1184N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.24 814 26 3.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.24 814 15 1.8% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.1.464 814 710 87.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.464 814 11 1.4% 1 +[L822F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.464 814 9 1.1% 1 +[L1244F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.464 814 7 0.9% 1 +[M1229I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.464 814 6 0.7% 1 +[T22I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.46 814 532 65.4% 0 (consensus) XBB.1.5.46 814 36 4.4% 2 -[R408S,S477N] XBB.1.5.46 814 25 3.1% 1 +[H146K]-[H146Q] XBB.1.5.46 814 21 2.6% 1 -[K417N] XBB.1.5.46 814 16 2.0% 1 +[L5F] EJ.2 809 613 75.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) EJ.2 809 14 1.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,D1139H,D1260E]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] EJ.2 809 13 1.6% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] EJ.2 809 11 1.4% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,K356T,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] EJ.2 809 9 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,T250A,G257S,K356T,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] AY.80 808 334 41.3% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.80 808 272 33.7% 1 +[T19R,T20I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.80 808 100 12.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.80 808 28 3.5% 1 +[T19R,R21T,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.80 808 16 2.0% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A701S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.7.7 806 679 84.2% 0 +[H69-,V70-,D80G,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.7 806 19 2.4% 1 +[H69-,V70-,D80G,V213G,G339D,L452R,F486V,Q675H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.7 806 9 1.1% 1 +[H69-,V70-,D80G,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.7.7 806 7 0.9% 1 +[H69-,V70-,D80G,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.7 806 5 0.6% 1 +[F2L,H69-,V70-,D80G,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.499 804 431 53.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.499 804 78 9.7% 1 +[E654Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.499 804 57 7.1% 1 +[A626S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.499 804 16 2.0% 2 +[A626S,P1162L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.499 804 15 1.9% 1 +[G181A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FK.1.1 801 614 76.7% 0 +[K147E,W152R,F157L,I210V,V213G,D215G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) FK.1.1 801 21 2.6% 1 +[K147E,W152R,F157L,I210V,V213G,D215G,G257S,K444T,L452R,F486S,Q613H,D1139H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] FK.1.1 801 17 2.1% 1 +[K147E,W152R,F157L,I210V,V213G,D215G,G257S,K444T,L452R,F486S,Q613H,M1237I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] FK.1.1 801 14 1.7% 1 +[K147E,W152L,F157L,I210V,V213G,D215G,G257S,K444T,L452R,F486S,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] FK.1.1 801 13 1.6% 1 +[K147E,W152R,F157L,I210V,V213G,D215G,G257S,K444T,L452R,F486S,K558R,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BU.1 801 614 76.7% 0 +[H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BU.1 801 51 6.4% 1 +[H69-,V70-,V213G,S255F,G339D,K444M,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BU.1 801 15 1.9% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,F486P,F490S] BU.1 801 14 1.7% 1 +[L5F,H69-,V70-,V213G,G339D,K444M,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BU.1 801 10 1.2% 1 +[H69-,V70-,V213G,G252D,G339D,K444M,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.177.42 801 714 89.1% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.42 801 35 4.4% 1 +[P26H,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.42 801 9 1.1% 1 +[F140L,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.42 801 6 0.7% 1 +[A222V,T553I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.42 801 4 0.5% 1 +[A222V,V642G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CK.2.1.1 800 576 72.0% 0 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) CK.2.1.1 800 28 3.5% 1 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.2.1.1 800 17 2.1% 1 +[H69-,V70-,V213G,S255F,T323I,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.2.1.1 800 15 1.9% 1 +[H69-,V70-,V213G,T250I,S255F,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.2.1.1 800 10 1.2% 1 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] B.1.436 800 748 93.5% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.436 800 11 1.4% 1 +[G75V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.436 800 8 1.0% 1 +[K537R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.436 800 3 0.4% 1 +[E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.436 800 3 0.4% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.25.1 799 650 81.4% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.25.1 799 13 1.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,M731I,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.25.1 799 12 1.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,L858I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.25.1 799 11 1.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,R646H,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.25.1 799 6 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,L858I,K1045R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.36.27 796 495 62.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.27 796 162 20.4% 1 +[A1087S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.27 796 33 4.1% 1 +[T470N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.27 796 29 3.6% 1 +[V213M]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.27 796 16 2.0% 2 +[D936G,A1087S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.354 794 431 54.3% 0 +[D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.354 794 36 4.5% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.354 794 26 3.3% 2 +[S12F,D138Y,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.354 794 22 2.8% 1 +[D138Y,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.354 794 18 2.3% 1 +[H66R,D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.19 793 511 64.4% 0 (consensus) XBB.1.5.19 793 40 5.0% 1 +[A411S] XBB.1.5.19 793 26 3.3% 1 +[F59L] XBB.1.5.19 793 19 2.4% 1 +[S98F] XBB.1.5.19 793 16 2.0% 1 +[N856S] XBC.1.6 793 594 74.9% 0 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,R346S,L452R,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] (consensus) XBC.1.6 793 35 4.4% 1 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,R346S,L452R,N703I,A899S]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1.6 793 29 3.7% 1 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,R346S,V445A,L452R,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1.6 793 15 1.9% 1 +[P25S,E156G,F157-,R158-,G184V,P209L,L212S,D215H,A222V,A243-,L244-,S256L,R346S,L452R,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1.6 793 9 1.1% 2 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,R346S,L452R,N703I,I844V,A899S]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] BA.1.12 792 682 86.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,E309Q,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.12 792 14 1.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,E309Q,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,R1185H]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.12 792 13 1.6% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,E309Q,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.12 792 11 1.4% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,E309Q,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S,N764K] BA.1.12 792 6 0.8% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,E309Q,G339D,S371L,Q493R,G496S,T547K,N856K,L981F,Q1113L]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] B.1.206 788 664 84.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.206 788 17 2.2% 2 +[A701V,D1260Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.206 788 13 1.6% 1 +[R1107S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.206 788 6 0.8% 1 +[A27V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.206 788 5 0.6% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.24 786 468 59.5% 0 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.24 786 39 5.0% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,T547K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.24 786 22 2.8% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,L841F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.24 786 17 2.2% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,D574N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.24 786 16 2.0% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] CP.1 783 568 72.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) CP.1 783 61 7.8% 1 +[P9L,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CP.1 783 14 1.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] CP.1 783 13 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CP.1 783 12 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.2 783 498 63.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) ED.2 783 63 8.0% 1 +[H69-,V70-,G181V,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.2 783 56 7.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.2 783 21 2.7% 1 +[H69-,V70-,V213G,S256L,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] ED.2 783 12 1.5% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AZ.1 779 636 81.6% 0 +[T95I,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) AZ.1 779 89 11.4% 1 +[T95I,A222V,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AZ.1 779 9 1.2% 1 +[T95I,E180D,E484K,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AZ.1 779 5 0.6% 1 +[T95I,E484K,T678I,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] AZ.1 779 5 0.6% 1 +[T95I,E484K,S680F,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.265 779 394 50.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.265 779 94 12.1% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.265 779 41 5.3% 1 +[D1118Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.265 779 38 4.9% 1 +[V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.265 779 35 4.5% 2 +[P26L,Q314K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CM.8.1 778 494 63.5% 0 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,E484A,F486P,F490S] (consensus) CM.8.1 778 30 3.9% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,R403K,K444R,N450D,L452M,E484R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,E484A,F486P,F490S] CM.8.1 778 10 1.3% 1 +[M153T,N164K,G181E,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,E484A,F486P,F490S] CM.8.1 778 8 1.0% 1 +[T29I,M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,E484A,F486P,F490S] CM.8.1 778 8 1.0% 1 +[M153T,N164K,V213G,H245N,G257D,G339D,K444R,N450D,L452M,E484R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,E484A,F486P,F490S] BA.5.2.4 778 491 63.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,T547I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.4 778 159 20.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.4 778 13 1.7% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.4 778 10 1.3% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,Y505H] BA.5.2.4 778 9 1.2% 1 +[H69-,V70-,D138N,V213G,G339D,L452R,F486V,T547I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.3 775 716 92.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.3 775 21 2.7% 1 +[S254F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.3 775 5 0.6% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.3 775 3 0.4% 1 +[A879T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.3 775 3 0.4% 1 +[W64L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DT.2 772 682 88.3% 0 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T547K]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) DT.2 772 7 0.9% 1 +[L5F,H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T547K]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DT.2 772 6 0.8% 1 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T547K,G1124D]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DT.2 772 5 0.6% 1 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T547K,A688V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DT.2 772 4 0.5% 1 +[H69-,V70-,M153I,V213G,G339D,K444T,L452R,F486V,T547K,V1230M]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] FL.10 771 432 56.0% 0 (consensus) FL.10 771 24 3.1% 1 +[T51I] FL.10 771 22 2.9% 1 +[E554K] FL.10 771 18 2.3% 1 +[G181R] FL.10 771 14 1.8% 1 -[G142D] A.2 769 528 68.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) A.2 769 53 6.9% 1 +[I197V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2 769 25 3.3% 1 +[Q675R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2 769 21 2.7% 9 +[L141-,G142-,V143-,D215A,+215AGY,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] A.2 769 10 1.3% 5 +[L141-,G142-,V143-,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.13 764 506 66.2% 0 +[T19R,T95I,E156G,F157-,R158-,V213A,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.13 764 48 6.3% 1 +[T19R,T95I,E156G,F157-,R158-,V213A,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.13 764 31 4.1% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,V213A,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.13 764 17 2.2% 1 +[T19R,T95I,E156G,F157-,R158-,V213A,L452R,P681R,D950N,D1165Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.13 764 15 2.0% 1 +[T19R,T95I,E156G,F157-,R158-,V213A,L452R,P681R,S937T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.1 762 287 37.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.1 762 212 27.8% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.1 762 34 4.5% 1 +[A520S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.1 762 25 3.3% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.36.1 762 16 2.1% 1 +[Q779L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FU.2 760 444 58.4% 0 +[E180V,T478R,T547I]-[T478K] (consensus) FU.2 760 30 3.9% 1 +[H146K,E180V,T478R,T547I]-[H146Q,T478K] FU.2 760 23 3.0% 1 +[E180V,T478R,T547I,E554K]-[T478K] FU.2 760 15 2.0% 2 +[E180V,T478R,T547I,A668S,A845S]-[T478K] FU.2 760 12 1.6% 1 +[E180V,T478R,T547I]-[G142D,T478K] B.1.375 755 489 64.8% 0 +[H69-,V70-]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.375 755 86 11.4% 1 +[H69-,V70-,C1236S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.375 755 70 9.3% 1 +[H69-,V70-,S477R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.375 755 14 1.9% 1 +[H69-,V70-,V622I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.375 755 6 0.8% 1 +[H69-,V70-,V382L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.1.2 753 578 76.8% 0 +[Q613H] (consensus) EG.1.2 753 25 3.3% 1 +[P479R,Q613H] EG.1.2 753 14 1.9% 1 +[Q613H,P1162S] EG.1.2 753 8 1.1% 1 +[Q613H,E654D] EG.1.2 753 7 0.9% 1 +[P85L,Q613H] B.1.551 752 256 34.0% 0 +[P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.551 752 213 28.3% 2 +[S254F,P681R,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.551 752 86 11.4% 1 +[S98F,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.551 752 50 6.6% 1 +[T95A,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.551 752 14 1.9% 3 +[S254F,P681R,T747I,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.23.1 752 654 87.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.23.1 752 23 3.1% 1 +[V213G,G257D,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.23.1 752 10 1.3% 4 +[V213G,G339D,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.23.1 752 8 1.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.23.1 752 6 0.8% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.10 750 671 89.5% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.10 750 8 1.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.10 750 8 1.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.3.10 750 6 0.8% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.10 750 6 0.8% 1 +[V213G,G339D,Q493R,P1143S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.2 749 555 74.1% 0 +[H69-,V70-,K147N,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.11.2 749 59 7.9% 1 +[H69-,V70-,T76I,K147N,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.2 749 26 3.5% 1 +[H69-,V70-,K147N,V213G,G339D,L452R,F486V,I598V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.2 749 24 3.2% 1 +[L5F,H69-,V70-,K147N,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.11.2 749 6 0.8% 1 +[H69-,V70-,K147N,V213G,G339D,L452R,F486V,T883I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.239 746 343 46.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.239 746 128 17.2% 2 +[L18F,P251H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.239 746 38 5.1% 1 +[R237S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.239 746 30 4.0% 1 +[D178N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.239 746 17 2.3% 1 +[I233V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DF.1 745 551 74.0% 0 +[H69-,V70-,V213G,A262S,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) DF.1 745 36 4.8% 1 +[H69-,V70-,F157L,V213G,A262S,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] DF.1 745 21 2.8% 1 +[H69-,V70-,V213G,A262S,G339D,L452R,F486V,P1263R]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] DF.1 745 14 1.9% 1 +[H69-,V70-,V213G,A262S,G339D,L452R,F486V,P1162S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] DF.1 745 12 1.6% 2 +[H69-,V70-,V213G,A262S,G339D,G446V,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.568 743 590 79.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.568 743 19 2.6% 1 +[P561S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.568 743 9 1.2% 1 +[K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.568 743 8 1.1% 1 +[D80N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.568 743 8 1.1% 1 +[T22I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.3.4 743 683 91.9% 0 +[V213G,G339D,Q493R,N641S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.4 743 9 1.2% 1 +[V213G,G339D,Q493R,N641S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.3.4 743 4 0.5% 1 +[V213G,G339D,Q493R,N641S,S943G]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.4 743 4 0.5% 1 +[V213G,G339D,Q493R,N641S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.3.4 743 4 0.5% 1 +[V213G,G339D,K444R,Q493R,N641S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] FL.15 742 432 58.2% 0 +[F456L] (consensus) FL.15 742 35 4.7% 1 +[G181V,F456L] FL.15 742 35 4.7% 1 +[Q14H,F456L] FL.15 742 17 2.3% 2 +[H146K,I197V,F456L]-[H146Q] FL.15 742 15 2.0% 1 +[F456L]-[K417N] B.1.177.24 741 663 89.5% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.24 741 32 4.3% 1 +[R214L,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.24 741 7 0.9% 1 +[A222V,E1262A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.24 741 4 0.5% 1 +[A222V,C1250F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.24 741 4 0.5% 1 +[H69Y,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.320 739 399 54.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.320 739 145 19.6% 1 +[V6F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.320 739 72 9.7% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.320 739 46 6.2% 1 +[S221L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.320 739 4 0.5% 3 +[T299I,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.351.2 737 387 52.5% 0 +[L18F,D80A,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.351.2 737 53 7.2% 1 +[L18F,D80A,D215G,L242-,A243-,L244-,E484K,A701V,I934V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351.2 737 25 3.4% 1 +[L18F,D80A,D215G,L242-,A243-,L244-,E484K,A701V,I1232F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351.2 737 19 2.6% 2 +[L18F,G75V,D80A,D215G,L242-,A243-,L244-,E484K,A701V,I934V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351.2 737 15 2.0% 1 +[L18F,D80A,E180G,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BR.2 734 459 62.5% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BR.2 734 150 20.4% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I,S730F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BR.2 734 15 2.0% 1 +[K147E,W152R,F157L,I210V,V213G,T240I,G257S,L452R,F486I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BR.2 734 8 1.1% 2 +[A27-,K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486I]-[L24-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BR.2 734 7 1.0% 2 +[K147E,W152R,F157L,I210V,V213G,G257S,A348S,L452R,F486I,S730F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.346 734 617 84.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.346 734 17 2.3% 1 +[P812L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.346 734 8 1.1% 2 +[D287G,V1122L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.346 734 8 1.1% 1 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.346 734 7 1.0% 1 +[I569F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.1.4 733 499 68.1% 0 +[Q613H] (consensus) EG.1.4 733 14 1.9% 1 +[D215H,Q613H] EG.1.4 733 14 1.9% 1 +[Q613H]-[R408S] EG.1.4 733 13 1.8% 1 +[H146K,Q613H]-[H146Q] EG.1.4 733 12 1.6% 1 +[M177T,Q613H] B.1.1.10 733 558 76.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.10 733 21 2.9% 2 +[S221L,T250A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.10 733 19 2.6% 1 +[M1237T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.10 733 17 2.3% 1 +[A879S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.10 733 7 1.0% 3 +[H69-,V70-,S221L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.66 730 492 67.4% 0 (consensus) XBB.1.5.66 730 17 2.3% 1 +[T478R]-[T478K] XBB.1.5.66 730 13 1.8% 1 -[K417N] XBB.1.5.66 730 9 1.2% 1 +[T208M] XBB.1.5.66 730 7 1.0% 1 +[H146K]-[H146Q] FL.10.1 728 552 75.8% 0 +[E554K] (consensus) FL.10.1 728 14 1.9% 1 +[H146K,E554K]-[H146Q] FL.10.1 728 9 1.2% 1 +[L5F,E554K] FL.10.1 728 9 1.2% 1 +[E554K,A688V] FL.10.1 728 9 1.2% 1 +[F175L,E554K] B.1.1.333 727 650 89.4% 0 +[L54F,D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.333 727 15 2.1% 1 +[L54F,D138Y,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.333 727 9 1.2% 1 +[S12F,L54F,D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.333 727 9 1.2% 1 +[L54F,D138Y,T547I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.333 727 5 0.7% 1 +[L54F,D138Y,T572I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.301 725 401 55.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.301 725 140 19.3% 1 +[V687L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.301 725 95 13.1% 2 +[L5F,V687L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.301 725 18 2.5% 2 +[A222V,V687L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.301 725 13 1.8% 2 +[I68T,V687L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.18.1 722 223 30.9% 0 (consensus) XBB.1.18.1 722 99 13.7% 1 -[R346T] XBB.1.18.1 722 59 8.2% 2 -[R346T,K417N] XBB.1.18.1 722 27 3.7% 2 +[F456L]-[R346T] XBB.1.18.1 722 21 2.9% 3 +[F456L,H1083Y]-[R346T] BA.4.6.1 720 602 83.6% 0 +[H69-,V70-,W152L,V213G,G339D,L452R,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.6.1 720 8 1.1% 2 +[H69-,V70-,W152L,V213G,G257S,G339D,L452R,F486V,N658S,D1168Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.1 720 7 1.0% 1 +[H69-,V70-,W152L,V213G,G339D,L452R,F486V,N658S,D1163Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.6.1 720 6 0.8% 1 +[H69-,V70-,W152L,V213G,G339D,L452R,E484V,F486V,N658S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,E484A,F486P,F490S] BA.4.6.1 720 5 0.7% 1 +[H69-,V70-,W152L,V213G,G339D,L452R,F486V,N658S]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.18 720 327 45.4% 0 +[V213G,G339D,Q493R,I692F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.18 720 325 45.1% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.18 720 4 0.6% 2 +[V213G,G339D,Q493R,A706V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.18 720 4 0.6% 1 +[V213G,G339D,Q493R,I692F,Q1201K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.18 720 4 0.6% 1 +[I197V,V213G,G339D,Q493R,I692F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.93 719 648 90.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.93 719 10 1.4% 1 +[A1087S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.93 719 9 1.3% 1 +[D1146H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.93 719 5 0.7% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.93 719 5 0.7% 1 +[V62L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.28 718 539 75.1% 0 +[H69-,V70-,V213G,P251L,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.28 718 52 7.2% 1 +[H69-,V70-,V213G,P251L,G339D,K444T,L452R,F486V,A694V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.28 718 12 1.7% 1 +[H69-,V70-,V213G,P251L,S255F,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.28 718 10 1.4% 1 +[H69-,V70-,V213G,P251L,G339D,K444T,L452R,F486V,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.28 718 10 1.4% 1 +[H69-,V70-,V213G,P251L,G339D,K444T,L452R,F486V,A684V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.111 716 214 29.9% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.111 716 175 24.4% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.111 716 63 8.8% 1 +[W152R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.111 716 28 3.9% 3 +[L249S,E484K,F1121L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.111 716 18 2.5% 2 +[L249S,E484K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.24 714 267 37.4% 0 +[H69-,V70-,V213G,T240I,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.24 714 224 31.4% 1 +[H69-,V70-,V213G,T240I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.24 714 53 7.4% 1 +[H69-,V70-,V213G,T240I,G339D,K444T,L452R,F486V,A701V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.24 714 52 7.3% 1 +[H69-,V70-,V213G,T240I,S255F,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.24 714 26 3.6% 2 +[F32V,H69-,V70-,V213G,T240I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AY.4.2.5 714 609 85.3% 0 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,Q414K,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.2.5 714 48 6.7% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,Q414K,L452R,P681R,M731I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.5 714 11 1.5% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,Q414K,G446D,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.5 714 5 0.7% 1 +[T19R,T95I,Y145H,E156G,F157-,R158-,A222V,Q414K,G446V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.2.5 714 4 0.6% 1 +[L5F,T19R,T95I,Y145H,E156G,F157-,R158-,A222V,Q414K,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.4 713 495 69.4% 0 (consensus) EG.4 713 19 2.7% 1 +[T478R]-[T478K] EG.4 713 19 2.7% 1 +[H146K]-[H146Q] EG.4 713 10 1.4% 1 -[K417N] EG.4 713 7 1.0% 2 +[H146K,S256L]-[H146Q] XBB.1.5.59 713 445 62.4% 0 +[F456L] (consensus) XBB.1.5.59 713 30 4.2% 1 +[H146K,F456L]-[H146Q] XBB.1.5.59 713 22 3.1% 1 +[M177I,F456L] XBB.1.5.59 713 21 2.9% 1 +[F456L,V510I] XBB.1.5.59 713 16 2.2% 1 +[F456L]-[K417N] B.1.177.6 711 583 82.0% 0 +[L18F,Q23H,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.6 711 22 3.1% 1 +[L18F,Q23H,A222V,A1020V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.6 711 22 3.1% 1 +[L18F,Q23H,D215Y,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.6 711 17 2.4% 2 +[L18F,Q23H,A222V,G446V,D796H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.6 711 10 1.4% 1 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.72 707 526 74.4% 0 +[L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.72 707 55 7.8% 1 +[L212S,V213G,D215E,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.72 707 23 3.3% 1 +[L212S,V213G,G339D,Q493R,T632N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.72 707 22 3.1% 1 +[L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.72 707 6 0.8% 1 +[D178N,L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.1.1.170 705 486 68.9% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.170 705 86 12.2% 1 +[E583Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.170 705 40 5.7% 1 +[D80Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.170 705 6 0.9% 1 +[V1228L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.170 705 5 0.7% 1 +[H49Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.44 705 536 76.0% 0 +[V213G,G339D,S371Y,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.44 705 57 8.1% 1 +[L176F,V213G,G339D,S371Y,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,V445P,G446S,N460K,F486P,F490S] BA.2.44 705 22 3.1% 1 +[V213G,G339D,S371Y,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.44 705 6 0.9% 1 +[V213G,G339D,S371Y,K444R,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,V445P,G446S,N460K,F486P,F490S] BA.2.44 705 6 0.9% 1 +[V213G,G339D,S371Y,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,V445P,G446S,N460K,F486P,F490S,P681H] XBB.2.3.3 698 373 53.4% 0 +[K182N,D253G,P521S]-[G252V] (consensus) XBB.2.3.3 698 79 11.3% 1 +[K182N,D253G,T478R,P521S]-[G252V,T478K] XBB.2.3.3 698 19 2.7% 2 +[K182N,D253G,S255F,T478R,P521S]-[G252V,T478K] XBB.2.3.3 698 14 2.0% 1 +[H146K,K182N,D253G,P521S]-[H146Q,G252V] XBB.2.3.3 698 9 1.3% 1 +[K182N,D253G,S494P,P521S]-[G252V] EE.2 698 394 56.4% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) EE.2 698 111 15.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.2 698 64 9.2% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q675H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.2 698 15 2.1% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.2 698 5 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A1078T]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.1 696 547 78.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) EE.1 696 18 2.6% 1 +[H69-,V70-,K182E,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.1 696 15 2.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.1 696 10 1.4% 1 +[H69-,V70-,P209L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] EE.1 696 9 1.3% 2 +[H69-,V70-,S112L,K182E,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.22 696 532 76.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.22 696 40 5.7% 1 +[D215G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.22 696 34 4.9% 2 +[L452M,F486L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.22 696 14 2.0% 1 +[A1087S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.22 696 6 0.9% 1 +[F486L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.6 695 617 88.8% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.6 695 22 3.2% 1 +[A67V,H69-,V70-,T76I,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.6 695 18 2.6% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,S254F,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.6 695 4 0.6% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F,I1169V]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.6 695 3 0.4% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BF.7.26 694 252 36.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.26 694 180 25.9% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.26 694 36 5.2% 3 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V,L822F,C1250F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.26 694 34 4.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,K1245R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.26 694 21 3.0% 1 +[H69-,V70-,H146-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.4.1 694 577 83.1% 0 +[F486S,S673G,T883I]-[F486P] (consensus) XBB.1.4.1 694 14 2.0% 1 +[F486S,S673G,T883I,L938F]-[F486P] XBB.1.4.1 694 6 0.9% 1 +[F486S,S673G,T883I]-[K417N,F486P] XBB.1.4.1 694 6 0.9% 1 +[H245Y,F486S,S673G,T883I]-[F486P] XBB.1.4.1 694 5 0.7% 1 +[H146K,F486S,S673G,T883I]-[H146Q,F486P] BA.2.50 693 639 92.2% 0 +[L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.50 693 13 1.9% 1 +[L212S,V213G,G339D,Q493R,E1151D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.50 693 7 1.0% 1 +[L212S,V213G,G339D,Q493R,I624T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.50 693 4 0.6% 1 +[S98F,L212S,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.50 693 3 0.4% 1 +[L212S,V213G,G339D,Q493R,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] HV.1 691 574 83.1% 0 +[Q52H,F157L,L452R,F456L] (consensus) HV.1 691 7 1.0% 1 +[Q52H,F157L,L452R,F456L,S514F] HV.1 691 7 1.0% 1 +[Q52H,H146K,F157L,L452R,F456L]-[H146Q] HV.1 691 6 0.9% 1 +[Q52H,F157L,L452R,F456L,A1078S] HV.1 691 4 0.6% 1 +[Q52H,F157L,L452R,F456L,Q493L] B.6 691 549 79.5% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.6 691 21 3.0% 1 +[K77M]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.6 691 20 2.9% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.6 691 16 2.3% 3 +[A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.6 691 6 0.9% 2 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.189 690 168 24.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.189 690 158 22.9% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.189 690 47 6.8% 1 +[E654Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.189 690 28 4.1% 1 +[V483F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.189 690 14 2.0% 2 +[N282D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DU.1 686 473 69.0% 0 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V,E1144Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) DU.1 686 67 9.8% 1 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V,E1144Q,P1162S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DU.1 686 24 3.5% 1 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V,E1144Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DU.1 686 12 1.7% 1 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V,T1117I,E1144Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] DU.1 686 12 1.7% 1 +[H69-,V70-,V213G,D253G,G339D,K444T,L452R,F486V,L922F,E1144Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] XBB.1.5.14 685 418 61.0% 0 (consensus) XBB.1.5.14 685 46 6.7% 1 +[A163S] XBB.1.5.14 685 12 1.8% 2 +[T19L,Q675H]-[T19I] XBB.1.5.14 685 11 1.6% 1 +[H146K]-[H146Q] XBB.1.5.14 685 11 1.6% 1 +[D1153Y] BE.5 684 503 73.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.5 684 36 5.3% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,P1162L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.5 684 33 4.8% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.5 684 18 2.6% 2 +[H69-,V70-,G75V,W152L,V213G,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.5 684 9 1.3% 1 +[H69-,V70-,V213G,P251L,G339D,L452R,F486V,P1162L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.71 683 278 40.7% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.71 683 180 26.4% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.71 683 28 4.1% 1 +[T19R,T20I,E156G,F157-,R158-,A222V,L452R,P681R,D950N,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.71 683 11 1.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.71 683 10 1.5% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,S1252F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] Q.7 683 415 60.8% 0 +[H69-,V70-,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) Q.7 683 134 19.6% 1 +[H69-,V70-,M177T,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.7 683 23 3.4% 1 +[H69-,V70-,A570D,Q677H,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.7 683 11 1.6% 2 +[S12F,H69-,V70-,A570D,T678I,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] Q.7 683 8 1.2% 1 +[H69-,V70-,W258S,A570D,T716I,S982A,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] DV.7.1 682 471 69.1% 0 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,L455F,F456L,F486S,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) DV.7.1 682 34 5.0% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,T240I,G257S,K444T,L452R,L455F,F456L,F486S,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.7.1 682 22 3.2% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,L455F,F456L,F486S,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P,F490S] DV.7.1 682 13 1.9% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,L455F,F456L,G485R,F486S,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] DV.7.1 682 10 1.5% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,A262S,K444T,L452R,L455F,F456L,F486S,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BQ.1.1.76 682 422 61.9% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.76 682 62 9.1% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.76 682 33 4.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,H1058Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.76 682 30 4.4% 1 +[H69-,V70-,K147E,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.76 682 12 1.8% 1 +[H69-,V70-,V213G,T323I,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.177.18 681 593 87.1% 0 +[A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.18 681 14 2.1% 1 +[T76I,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.18 681 12 1.8% 1 +[A222V,D427G,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.18 681 10 1.5% 1 +[A222V,E484Q,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.18 681 7 1.0% 1 +[L5F,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.7.14.1 679 317 46.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.14.1 679 207 30.5% 1 +[H69-,V70-,V83F,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14.1 679 10 1.5% 2 +[H69-,V70-,V83F,V213G,G339D,L452R,F486V,T739A,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14.1 679 8 1.2% 3 +[H69-,V70-,V83F,V213G,E309Q,G339D,L452R,F486V,N1187S,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14.1 679 6 0.9% 1 +[H69-,V70-,G75V,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.258.14 678 545 80.4% 0 +[N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.258.14 678 44 6.5% 1 +[L18F,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.14 678 15 2.2% 1 +[M153I,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.14 678 4 0.6% 1 +[N439K,S1252P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.14 678 4 0.6% 1 +[N439K,G1219S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.11 678 492 72.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.11 678 30 4.4% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.11 678 29 4.3% 1 +[T19R,T95I,I100L,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.11 678 13 1.9% 1 +[T19R,T29I,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.11 678 10 1.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1191M]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.1 673 491 73.0% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.1 673 9 1.3% 1 +[I68V,K147E,W152R,F157L,I210V,V213G,G257S,K356T,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.1 673 9 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,K356T,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.1 673 8 1.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,G261A,K356T,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.1 673 6 0.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,S494P,Q675H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] B.1.1.279 672 592 88.1% 0 +[R21I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.279 672 35 5.2% 1 +[R21I,L841R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.279 672 11 1.6% 1 +[R21I,T716I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.279 672 4 0.6% 1 +[R21I,N211S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.279 672 3 0.4% 1 +[R21I,S255P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.28 668 482 72.2% 0 +[H69-,V70-,V213G,Y248S,+248RWMD,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.28 668 86 12.9% 5 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.28 668 11 1.6% 1 +[T19L,H69-,V70-,V213G,Y248S,+248RWMD,G339D,K444T,L452R,F486V]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.28 668 5 0.7% 1 +[H69-,V70-,V213G,Y248S,+248RWMD,G339D,K444T,L452R,F486V,E554Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.28 668 4 0.6% 1 +[H69-,V70-,V213G,Y248S,+248RWMD,G339D,K444T,L452R,F486V,P621S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.620 668 474 71.0% 0 +[P26S,H69-,V70-,V126A,L242-,A243-,L244-,H245Y,E484K,T1027I,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] (consensus) B.1.620 668 23 3.4% 4 +[P26S,H69-,V70-,V126A,E484K,T1027I,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.620 668 18 2.7% 1 +[P26S,H69-,V70-,V126A,N137S,L242-,A243-,L244-,H245Y,E484K,T1027I,D1118H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.620 668 12 1.8% 1 +[P26S,H69-,V70-,V126A,L242-,A243-,L244-,H245Y,E484K,T1027I,D1118H,V1133F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.620 668 8 1.2% 1 +[P26S,H69-,V70-,V126A,L242-,A243-,L244-,H245Y,E484K,T1027I,D1118H,Q1208H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.1.377 668 539 80.7% 0 +[I233V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.377 668 86 12.9% 1 +[I233V,T716I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.377 668 13 1.9% 1 +[I233V,G257S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.377 668 4 0.6% 1 +[I233V,V267L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.377 668 3 0.4% 1 +[I233V,T676P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.9 668 595 89.1% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.9 668 22 3.3% 1 +[H69-,V70-,N185S,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.9 668 6 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BF.9 668 3 0.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G1124V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.9 668 3 0.4% 1 +[T22I,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] C.16 667 240 36.0% 0 +[L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) C.16 667 121 18.1% 1 +[L452R,G769V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.16 667 58 8.7% 3 +[L452R,S640F,G769V,K854N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.16 667 25 3.7% 1 +[A411S,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.16 667 21 3.1% 1 +[L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,N764K,D796Y,Q954H,N969K] B.1.36.22 666 327 49.1% 0 +[G181V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.22 666 177 26.6% 1 +[L18F,G181V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.22 666 57 8.6% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.22 666 21 3.2% 2 +[L18F,G181V,A892S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.22 666 6 0.9% 2 +[V1133I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.524 664 513 77.3% 0 +[A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.524 664 41 6.2% 1 +[R214L,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.524 664 10 1.5% 1 +[L452M,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.524 664 6 0.9% 3 +[R214L,E654A,A701V,T791I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.524 664 5 0.8% 2 +[R214L,A701V,L938F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.432 661 260 39.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.432 661 35 5.3% 1 +[A647V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.432 661 28 4.2% 1 +[T618S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.432 661 25 3.8% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.432 661 24 3.6% 1 +[A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.5 659 242 36.7% 0 +[K1181I] (consensus) XBB.1.5.5 659 119 18.1% 1 +[G181V,K1181I] XBB.1.5.5 659 111 16.8% 1 +[T523A,K1181I] XBB.1.5.5 659 29 4.4% 2 +[E471Q,T523A,K1181I] XBB.1.5.5 659 10 1.5% 1 +[K1181I]-[K417N] C.17 659 260 39.5% 0 +[S12F,L452R,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) C.17 659 86 13.1% 2 +[Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.17 659 40 6.1% 1 +[L452R,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.17 659 16 2.4% 3 +[H49Y,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] C.17 659 14 2.1% 1 +[S12F,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.86 658 428 65.0% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,A845S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.86 658 122 18.5% 1 +[T19R,E156G,F157-,R158-,P251L,L452R,P681R,A845S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.86 658 23 3.5% 1 +[T19R,D80G,E156G,F157-,R158-,L452R,P681R,A845S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.86 658 12 1.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A845S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.86 658 10 1.5% 1 +[T19R,E156G,F157-,R158-,L452R,Y660H,P681R,A845S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.65 657 377 57.4% 0 (consensus) XBB.1.5.65 657 30 4.6% 2 -[R408S,S477N] XBB.1.5.65 657 22 3.3% 1 +[E619Q] XBB.1.5.65 657 16 2.4% 1 +[R78M] XBB.1.5.65 657 14 2.1% 3 -[R408S,S477N,Q954H] AY.134 656 611 93.1% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.134 656 8 1.2% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,L841I,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.134 656 4 0.6% 1 +[L5F,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.134 656 3 0.5% 1 +[S13I,T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.134 656 3 0.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,M1229I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.7.1 654 518 79.2% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] (consensus) P.1.7.1 654 15 2.3% 1 +[L5F,L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.7.1 654 13 2.0% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,E583D,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.7.1 654 9 1.4% 2 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,E583D,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.7.1 654 8 1.2% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,K444N,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] BN.1.2.1 651 513 78.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,T470N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.2.1 651 9 1.4% 1 +[L8F,K147E,W152R,F157L,I210V,V213G,G257S,K356T,T470N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.1 651 9 1.4% 1 +[K147E,W152R,F157L,N185S,I210V,V213G,G257S,K356T,T470N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.1 651 8 1.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,T470N,T547K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.2.1 651 6 0.9% 2 +[K147E,W152R,F157L,I210V,V213G,K356T,T470N]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] B.1.160.8 651 561 86.2% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.160.8 651 36 5.5% 1 +[D1084E]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.8 651 10 1.5% 1 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.8 651 10 1.5% 2 +[P26S,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.8 651 5 0.8% 3 +[P26S,E484D,S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BE.1.3 648 472 72.8% 0 +[H69-,V70-,M153I,V213G,G339D,L452R,F486V,E1258Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.1.3 648 60 9.3% 1 +[H69-,V70-,K147N,M153I,V213G,G339D,L452R,F486V,E1258Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.3 648 22 3.4% 1 +[L5F,H69-,V70-,M153I,V213G,G339D,L452R,F486V,E1258Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.1.3 648 11 1.7% 2 +[H69-,V70-,M153I,V213G,G339D,L452R,F486V,E1258Q]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BE.1.3 648 7 1.1% 1 +[H69-,V70-,M153I,V213G,G339D,L452R,F486V,E1258Q]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.16 648 367 56.6% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.3.16 648 88 13.6% 1 +[V213G,G339D,Q493R]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.16 648 88 13.6% 3 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S373P,S375F,T376A,V445P,G446S,N460K,F486P,F490S] BA.2.3.16 648 8 1.2% 2 +[V213G,G339D,Q493R,G1251A]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.3.16 648 8 1.2% 1 +[V213G,G339D,Q493R,D1199Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] CR.1.1 647 518 80.1% 0 +[V62I,H69-,V70-,V213G,G339D,K444R,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) CR.1.1 647 15 2.3% 1 +[V62I,H69-,V70-,V213G,G339D,K444R,L452R,F486V,S940A]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CR.1.1 647 14 2.2% 1 +[V62I,H69-,V70-,V213G,G339D,T430I,K444R,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CR.1.1 647 7 1.1% 2 +[V62I,H69-,V70-,F186Y,V213G,G339D,K444R,V445A,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] CR.1.1 647 6 0.9% 1 +[P9L,V62I,H69-,V70-,V213G,G339D,K444R,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] AY.105 641 331 51.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.105 641 111 17.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.105 641 44 6.9% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.105 641 11 1.7% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,P812S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.105 641 9 1.4% 1 +[T19R,T95I,E156G,F157-,R158-,R214L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.91 640 196 30.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.91 640 158 24.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.91 640 57 8.9% 2 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.91 640 28 4.4% 1 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.91 640 20 3.1% 2 +[T19R,G75V,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.5.2.58 639 504 78.9% 0 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.58 639 27 4.2% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.58 639 14 2.2% 1 +[T29I,H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.58 639 10 1.6% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.2.58 639 9 1.4% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] B.1.8 639 387 60.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.8 639 154 24.1% 3 +[A262S,Q314K,F486L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.8 639 15 2.3% 1 +[T716I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.8 639 13 2.0% 1 +[V367F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.8 639 9 1.4% 1 +[A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.7.14.5 637 489 76.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.7.14.5 637 23 3.6% 1 +[H69-,V70-,V213G,R214L,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14.5 637 6 0.9% 1 +[H69-,V70-,E96A,V213G,G339D,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14.5 637 5 0.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,C1243F,G1267R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BF.7.14.5 637 4 0.6% 2 +[H69-,V70-,K182N,V213G,G339D,R346I,L452R,F486V,C1243F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBB.1.5.23 636 291 45.8% 0 (consensus) XBB.1.5.23 636 54 8.5% 1 +[H146K]-[H146Q] XBB.1.5.23 636 37 5.8% 1 +[H245Y] XBB.1.5.23 636 31 4.9% 1 -[R408S] XBB.1.5.23 636 22 3.5% 1 +[T19L]-[T19I] BN.1.3.7 636 390 61.3% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3.7 636 41 6.4% 1 +[G75S,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.7 636 27 4.2% 3 +[G75S,H146L,K147E,W152R,F157L,I210V,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,G252V,L368I,V445P,F486P] BN.1.3.7 636 25 3.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,V622F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.7 636 16 2.5% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,T478R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,T478K,F486P] B.1.177.62 633 555 87.7% 0 +[L18F,T51I,A222V,D936Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.62 633 16 2.5% 1 +[L18F,T51I,A222V,D936Y,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.62 633 10 1.6% 1 +[L5F,L18F,T51I,A222V,D936Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.62 633 7 1.1% 1 +[L18F,T51I,T76I,A222V,D936Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.62 633 6 0.9% 1 +[L18F,T51I,A222V,P337S,D936Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.9 631 486 77.0% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.9 631 16 2.5% 3 +[K147E,W152R,E156-,F157-,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,R346T,L368I,V445P,F486P] BN.1.9 631 12 1.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1.9 631 5 0.8% 1 +[V70L,K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.9 631 5 0.8% 1 +[K147E,W152R,F157L,I210V,V213G,H245Y,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] CN.1 630 354 56.2% 0 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) CN.1 630 164 26.0% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] CN.1 630 12 1.9% 1 +[H69-,V70-,V213G,G252S,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] CN.1 630 11 1.7% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V,V1060I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] CN.1 630 5 0.8% 1 +[L5F,H69-,V70-,V213G,G339D,N450D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.58 630 449 71.3% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.58 630 54 8.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.58 630 27 4.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.58 630 17 2.7% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P479S,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.58 630 8 1.3% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.1.9 630 525 83.3% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.1.9 630 57 9.0% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.9 630 11 1.7% 1 +[A67V,H69-,V70-,T95I,F140L,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.9 630 3 0.5% 1 +[S12F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.1.9 630 3 0.5% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,S162N,N211-,L212I,+214EPE,G339D,R346K,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BQ.1.22 627 301 48.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.22 627 74 11.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.22 627 62 9.9% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.22 627 31 4.9% 2 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V,V608I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.22 627 8 1.3% 3 +[H69-,V70-,F157L,V213G,T307I,G339D,K444T,L452R,F486V,Q1201K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] B.1.1.294 625 283 45.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.294 625 65 10.4% 2 +[T95I,A688S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.294 625 40 6.4% 1 +[E96D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.294 625 13 2.1% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.294 625 10 1.6% 2 +[E96D,L948I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.428 624 408 65.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.428 624 45 7.2% 1 +[D138Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.428 624 35 5.6% 1 +[N481K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.428 624 14 2.2% 1 +[H1159Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.428 624 10 1.6% 2 +[D138Y,P812S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.2 624 457 73.2% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,Q675K,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.9.2.2 624 40 6.4% 1 +[T19R,V70L,E156G,F157-,R158-,A222V,L452R,Q675K,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.2 624 16 2.6% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,Q675K,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.2 624 16 2.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,Q675K,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.2 624 14 2.2% 1 +[T19R,E156G,F157-,R158-,G181V,A222V,L452R,Q675K,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.33 624 542 86.9% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.33 624 25 4.0% 1 +[H66N,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.33 624 11 1.8% 1 +[V213G,G339D,Q493R,I1114T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.33 624 7 1.1% 1 +[V213G,R214L,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.33 624 6 1.0% 1 +[V213G,G339D,Q493R,T791I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] XBC.1 623 435 69.8% 0 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] (consensus) XBC.1 623 24 3.9% 1 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I,Q1208H]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1 623 23 3.7% 1 +[P25S,A67S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1 623 12 1.9% 2 +[P25S,A67S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1 623 10 1.6% 1 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] FL.13 622 419 67.4% 0 (consensus) FL.13 622 22 3.5% 1 -[K417N] FL.13 622 8 1.3% 1 +[L5F] FL.13 622 7 1.1% 1 +[D1259Y] FL.13 622 7 1.1% 2 +[S255F,D1084H] GR.1 620 431 69.5% 0 +[E281D,V445S]-[V445P] (consensus) GR.1 620 24 3.9% 1 +[H146K,E281D,V445S]-[H146Q,V445P] GR.1 620 19 3.1% 1 +[G75S,E281D,V445S]-[V445P] GR.1 620 13 2.1% 1 +[L249F,E281D,V445S]-[V445P] GR.1 620 11 1.8% 1 +[N148T,E281D,V445S]-[V445P] BF.18 620 505 81.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.18 620 21 3.4% 1 +[H69-,V70-,V213G,G339D,R346S,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.18 620 16 2.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D1199H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.18 620 11 1.8% 1 +[L5F,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.18 620 4 0.6% 1 +[H69-,V70-,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] AY.43.9 620 326 52.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.43.9 620 151 24.4% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.9 620 42 6.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,N960K]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.9 620 16 2.6% 1 +[T19R,M153I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.43.9 620 6 1.0% 1 +[T19R,E156G,F157-,R158-,S221L,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.11 619 347 56.1% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.11 619 63 10.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S494P,Q1208H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.11 619 57 9.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S494P]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.11 619 12 1.9% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S494P]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.11 619 10 1.6% 2 +[H69-,V70-,V213G,H245Y,G339D,K444T,L452R,F486V,S494P]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.42 618 450 72.8% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S704L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.42 618 34 5.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S704L,T747I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.42 618 14 2.3% 1 +[H69-,V70-,V213G,H245Y,G339D,K444T,L452R,F486V,S704L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.42 618 10 1.6% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S704L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,F486P,F490S] BQ.1.1.42 618 7 1.1% 1 +[L5F,H69-,V70-,V213G,G339D,K444T,L452R,F486V,S704L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] AY.10 617 468 75.9% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.10 617 43 7.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.10 617 17 2.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.10 617 11 1.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.10 617 9 1.5% 2 +[T19R,I105V,E156G,F157-,R158-,A222V,A243S,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.576 617 520 84.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.576 617 15 2.4% 1 +[G75V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.576 617 6 1.0% 2 +[T572I,K1181R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.576 617 5 0.8% 1 +[H1101Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.576 617 4 0.6% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FY.2 616 445 72.2% 0 +[I197T,Y200C] (consensus) FY.2 616 19 3.1% 1 +[I197T,Y200C,V1264L] FY.2 616 18 2.9% 1 +[I197T,Y200C,I210-] FY.2 616 10 1.6% 1 +[I68T,I197T,Y200C] FY.2 616 10 1.6% 1 +[I197T,Y200C]-[K417N] GK.1.1 616 466 75.6% 0 +[L455F,F456L,T573I,S704L] (consensus) GK.1.1 616 13 2.1% 1 +[L455F,F456L,T573I,S704L,G946V] GK.1.1 616 11 1.8% 1 +[T19L,L455F,F456L,T573I,S704L]-[T19I] GK.1.1 616 7 1.1% 1 +[L5F,L455F,F456L,T573I,S704L] GK.1.1 616 7 1.1% 1 +[L455F,F456L,T573I,A626S,S704L] BA.1.17.1 616 564 91.6% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.17.1 616 6 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,A260T,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17.1 616 6 1.0% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,R765L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17.1 616 5 0.8% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.17.1 616 4 0.6% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,H625R,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] EG.1.3 614 408 66.4% 0 +[Q613H] (consensus) EG.1.3 614 14 2.3% 1 +[D253Y,Q613H] EG.1.3 614 8 1.3% 1 +[H146K,Q613H]-[H146Q] EG.1.3 614 7 1.1% 2 +[A222V,D253Y,Q613H] EG.1.3 614 6 1.0% 1 +[Q613H]-[R408S] P.1.13 611 547 89.5% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) P.1.13 611 5 0.8% 1 +[L18F,T20N,P26S,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.13 611 5 0.8% 1 +[L18F,T20N,P25L,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.13 611 4 0.7% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F,G1223S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.13 611 3 0.5% 1 +[L18F,T20N,P26S,D138Y,R190S,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.32 608 307 50.5% 0 +[T19R,E156G,F157-,R158-,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.32 608 40 6.6% 1 +[T19R,E156G,F157-,R158-,T250I,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.32 608 30 4.9% 2 +[T19R,Y28F,E156G,F157-,R158-,L216F,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.32 608 27 4.4% 2 +[T19R,E156G,F157-,R158-,L452R,T572I,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.32 608 24 3.9% 1 +[T19R,E156G,F157-,R158-,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.8.2 607 447 73.6% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.8.2 607 90 14.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688V,V1164I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BQ.1.8.2 607 8 1.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.8.2 607 5 0.8% 2 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619D,A688V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S,P681H] BQ.1.8.2 607 4 0.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,E619D,A688V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] AY.28 607 448 73.8% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,A701S,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.28 607 7 1.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,E484Q,P681R,A701S,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.28 607 6 1.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,Q613H,P681R,A701S,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.28 607 5 0.8% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,T573I,P681R,A701S,D950N,A1078S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.28 607 4 0.7% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,A701S,D950N,A1078S,Q1208H]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] CK.1.4 606 502 82.8% 0 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) CK.1.4 606 14 2.3% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] CK.1.4 606 13 2.1% 1 +[H69-,V70-,V213G,T307I,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.1.4 606 6 1.0% 1 +[H69-,V70-,V213G,G339D,S359N,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] CK.1.4 606 5 0.8% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V,V1264L]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.1.361 604 490 81.1% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.361 604 35 5.8% 1 +[D1163G]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.361 604 9 1.5% 1 +[P499S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.361 604 6 1.0% 1 +[A626S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.361 604 4 0.7% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.280 603 490 81.3% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.280 603 9 1.5% 1 +[A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.280 603 8 1.3% 1 +[G1219C]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.280 603 7 1.2% 1 +[E406Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.280 603 6 1.0% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.17 600 450 75.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.17 600 27 4.5% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.17 600 16 2.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S940F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.17 600 6 1.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,A688D]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.17 600 5 0.8% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.2.54 599 445 74.3% 0 +[V213G,Y248S,G339D,Q493R,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.54 599 39 6.5% 1 +[V213G,Y248S,G339D,Q493R,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.2.54 599 29 4.8% 1 +[V213G,Y248S,G339D,Q493R,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.54 599 15 2.5% 1 +[V213G,Y248S,G339D,Q493R,E1202Q,V1228L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.54 599 11 1.8% 1 +[V213G,Y248S,G339D,Q493R,E1202Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,P681H] B.1.177.20 599 557 93.0% 0 +[A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.20 599 10 1.7% 1 +[L141V,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.20 599 6 1.0% 1 +[M177I,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.20 599 5 0.8% 1 +[L5F,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.20 599 3 0.5% 1 +[A222V,E583D,P1263S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.30 599 440 73.5% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.160.30 599 46 7.7% 1 +[K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.30 599 15 2.5% 2 +[A879V,K1191N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.30 599 13 2.2% 1 +[S494P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.30 599 10 1.7% 1 +[K558N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.1.5 599 548 91.5% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,A831V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.5 599 7 1.2% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,A831V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,K417N,V445P,N460K,F486P,F490S] BA.1.5 599 4 0.7% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,A831V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.5 599 4 0.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,A831V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] BA.1.5 599 2 0.3% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,A831V,N856K,L981F,V1230L]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] AY.4.12 599 519 86.6% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.4.12 599 27 4.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,S680F,P681R,D950N,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.12 599 16 2.7% 1 +[T19R,T95I,E156G,F157-,R158-,V193L,L452R,P681R,D950N,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.12 599 5 0.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,T676I,P681R,D950N,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.4.12 599 3 0.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,I896T,D950N,P1162S]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.18 599 394 65.8% 0 (consensus) FL.18 599 19 3.2% 1 -[K417N] FL.18 599 18 3.0% 1 +[R78M] FL.18 599 14 2.3% 1 -[T478K] FL.18 599 10 1.7% 1 +[H146K]-[H146Q] BA.2.62 598 505 84.4% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.62 598 13 2.2% 1 +[V213G,G339D,Q493R,S939F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.62 598 8 1.3% 1 +[W64L,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.62 598 7 1.2% 1 +[L5F,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.62 598 6 1.0% 1 +[G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BE.4.1 595 364 61.2% 0 +[H69-,V70-,P209L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BE.4.1 595 55 9.2% 1 +[H69-,V70-,G181V,P209L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.4.1 595 14 2.4% 1 +[H69-,V70-,F135I,P209L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.4.1 595 14 2.4% 1 +[H69-,V70-,Q183L,P209L,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BE.4.1 595 13 2.2% 1 +[H69-,V70-,P209L,V213G,G339D,V445A,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.177.33 595 380 63.9% 0 +[A222V,G639S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.33 595 69 11.6% 1 +[A222V,G639S,A672V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.33 595 38 6.4% 1 +[A222V,G639S,V1264L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.33 595 10 1.7% 1 +[A222V,G639S,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.33 595 6 1.0% 1 +[L5F,A222V,G639S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.12 595 348 58.5% 0 (consensus) FL.12 595 118 19.8% 1 +[D1084E] FL.12 595 11 1.8% 1 +[H146K]-[H146Q] FL.12 595 7 1.2% 1 +[G1085R] FL.12 595 6 1.0% 1 -[K417N] AY.87 594 523 88.0% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.87 594 12 2.0% 1 +[L5F,T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.87 594 8 1.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,K1073N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.87 594 5 0.8% 3 +[T19R,E156G,F157-,R158-,L452R,N679T,S680R,P681-,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.87 594 4 0.7% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D936Y,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BM.1.1 594 357 60.1% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BM.1.1 594 26 4.4% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.1.1 594 24 4.0% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.1.1 594 17 2.9% 1 +[K147E,W152R,F157L,N185S,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.1.1 594 12 2.0% 4 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.1.192 593 289 48.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.192 593 190 32.0% 1 +[D138H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.192 593 36 6.1% 1 +[F157S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.192 593 10 1.7% 2 +[F157S,T678A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.192 593 5 0.8% 1 +[T572I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.16.15 591 446 75.5% 0 +[Y145Q,H146N,K147-,E180V,T478R,P521S]-[Y144-,H146Q,T478K] (consensus) XBB.1.16.15 591 23 3.9% 1 +[R78S,Y145Q,H146N,K147-,E180V,T478R,P521S]-[Y144-,H146Q,T478K] XBB.1.16.15 591 21 3.6% 1 +[Q52H,Y145Q,H146N,K147-,E180V,T478R,P521S]-[Y144-,H146Q,T478K] XBB.1.16.15 591 14 2.4% 1 +[Y145Q,H146N,K147-,E180V,T478R,P521S,T732I]-[Y144-,H146Q,T478K] XBB.1.16.15 591 6 1.0% 1 +[Y145Q,H146N,K147-,E180V,T478R]-[Y144-,H146Q,T478K] BN.1.7 591 364 61.6% 0 +[K147E,W152R,F157L,M177T,+209V,N211G,L212-,V213-,G257S,K356T,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.7 591 81 13.7% 1 +[V62I,K147E,W152R,F157L,M177T,+209V,N211G,L212-,V213-,G257S,K356T,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.7 591 45 7.6% 1 +[K147E,W152R,F157L,M177T,+209V,N211G,L212-,V213-,G257S,K356T,N751D,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.7 591 14 2.4% 1 +[K147E,W152R,F157L,M177T,G181V,+209V,N211G,L212-,V213-,G257S,K356T,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.7 591 10 1.7% 1 +[K147E,W152R,F157L,M177T,+209V,N211G,L212-,V213-,G257S,K356T,H1101Y,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] B.1.177.83 591 258 43.7% 0 +[A222V,A262S,P272L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.83 591 105 17.8% 1 +[A222V,A262S,P272L,L452R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.83 591 72 12.2% 2 +[A222V,A262S,P272L,L452R,V1268I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.83 591 30 5.1% 1 +[A222V,A262S,P272L,L1224F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.83 591 7 1.2% 2 +[A222V,A262S,P272L,L452R,T859I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.29 588 332 56.5% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.29 588 114 19.4% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q613H]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.29 588 12 2.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,K417N,V445P,G446S,F486P,F490S] BQ.1.1.29 588 10 1.7% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,S494P,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.29 588 7 1.2% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,Q613H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,F486P,F490S] CH.1.1.26 588 455 77.4% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.26 588 13 2.2% 5 +[K147E,W152R,F157L,+209V,N211G,L212-,V213-,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.26 588 8 1.4% 4 +[I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.26 588 7 1.2% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,E1144Q]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.26 588 5 0.9% 1 +[K147E,W152R,F157L,M177I,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] FD.4 587 354 60.3% 0 (consensus) FD.4 587 42 7.2% 2 +[H146K,K182R]-[H146Q] FD.4 587 12 2.0% 3 +[H146K,K182R,T747I]-[H146Q] FD.4 587 11 1.9% 2 +[T478R,T883I]-[T478K] FD.4 587 10 1.7% 1 +[P521S] BA.2.39 587 535 91.1% 0 +[V213G,G339D,Q493R,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.39 587 8 1.4% 1 +[V213G,G339D,Q493R,L858I,G1219V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.39 587 6 1.0% 1 +[H49Y,V213G,G339D,Q493R,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.39 587 5 0.9% 1 +[V213G,G339D,Q493R,L858I,D950N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.39 587 4 0.7% 1 +[V213G,G339D,Q493R,L858I]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] B.1.1.141 584 351 60.1% 0 +[M153T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.141 584 40 6.8% 2 +[M153T,T385I,P681R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.141 584 36 6.2% 1 +[M153T,N540S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.141 584 29 5.0% 1 +[M153T,T385I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.141 584 12 2.1% 1 +[M153T,Y351F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.5.1.6 583 447 76.7% 0 +[Q52H,F157L,F456L] (consensus) EG.5.1.6 583 31 5.3% 1 +[Q52H,F157L,N211I,F456L] EG.5.1.6 583 14 2.4% 1 +[L5F,Q52H,F157L,F456L] EG.5.1.6 583 5 0.9% 1 +[Q52H,F157L,F456L]-[K417N] EG.5.1.6 583 4 0.7% 1 +[Q52H,F157L,F456L,T470I] AY.88 580 184 31.7% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.88 580 86 14.8% 1 +[T19R,E156G,F157-,R158-,L452R,S680F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.88 580 75 12.9% 2 +[T19R,T124S,E156G,F157-,R158-,L452R,S680F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.88 580 25 4.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.88 580 22 3.8% 2 +[T19R,E156G,F157-,R158-,Q414R,L452R,S680F,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BF.24 579 483 83.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.24 579 18 3.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BF.24 579 14 2.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.24 579 8 1.4% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.24 579 5 0.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] B.1.177.19 579 551 95.2% 0 +[A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.19 579 4 0.7% 1 +[L5F,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.19 579 3 0.5% 1 +[A222V,E583D,T1027I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.19 579 3 0.5% 1 +[A222V,E583D,P809S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.19 579 2 0.3% 1 +[Q183R,A222V,E583D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.4.1.4 579 449 77.5% 0 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,C1235F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.4.1.4 579 27 4.7% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,C1235F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.4.1.4 579 19 3.3% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,C1235F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.4.1.4 579 15 2.6% 1 +[V3G,H69-,V70-,V213G,G339D,L452R,F486V,I934V,C1235F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.4.1.4 579 11 1.9% 1 +[V3G,H69-,V70-,A93S,V213G,G339D,L452R,F486V,C1235F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] A.27 578 317 54.8% 0 +[L18F,L452R,A653V,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,D614G,N679K,P681H,N764K,Q954H,N969K] (consensus) A.27 578 79 13.7% 1 +[L18F,L452R,A653V,Q677H,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,D614G,N679K,P681H,N764K,Q954H,N969K] A.27 578 26 4.5% 1 +[L18F,H49Y,L452R,A653V,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,D614G,N679K,P681H,N764K,Q954H,N969K] A.27 578 16 2.8% 2 +[L18F,L452R,A653V,Q677H,K1191N,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,D614G,N679K,P681H,N764K,Q954H,N969K] A.27 578 10 1.7% 1 +[L18F,L176F,L452R,A653V,G1219V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,D614G,N679K,P681H,N764K,Q954H,N969K] BA.5.1.9 577 475 82.3% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.9 577 36 6.2% 2 +[F32L,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.9 577 10 1.7% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.9 577 8 1.4% 2 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.1.9 577 4 0.7% 1 +[H69-,V70-,M153I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.2 577 456 79.0% 0 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.9.2 577 33 5.7% 2 +[H69-,V70-,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.2 577 29 5.0% 1 +[L179P,V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.2 577 7 1.2% 1 +[V213G,G339D,Q493R,I1210V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.2 577 6 1.0% 1 +[V213G,G339D,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] B.1.1.433 576 494 85.8% 0 +[S477R,S673T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.433 576 22 3.8% 1 +[S477R,S673T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.433 576 17 3.0% 1 +[S477R,S673T,V1104L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.1.433 576 9 1.6% 1 +[S477R,S673T,G946V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] B.1.1.433 576 4 0.7% 1 +[V143F,S477R,S673T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,P681H,N764K,D796Y,Q954H,N969K] XBB.1.17.1 575 265 46.1% 0 +[D215H] (consensus) XBB.1.17.1 575 25 4.3% 1 +[H146K,D215H]-[H146Q] XBB.1.17.1 575 21 3.7% 1 +[D215H,T284I] XBB.1.17.1 575 13 2.3% 1 +[D215H,P812S] XBB.1.17.1 575 9 1.6% 1 +[G184D,D215H] AY.66 575 417 72.5% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.66 575 52 9.0% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.66 575 10 1.7% 1 +[T19R,E156G,F157-,R158-,A222V,V367I,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.66 575 9 1.6% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,T1231A]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.66 575 7 1.2% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,S1242N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBC.1.3 574 385 67.1% 0 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] (consensus) XBC.1.3 574 27 4.7% 1 +[P25S,E156G,F157-,R158-,Y170H,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1.3 574 14 2.4% 1 +[P25S,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1.3 574 12 2.1% 1 +[P25F,E156G,F157-,R158-,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] XBC.1.3 574 10 1.7% 1 +[P25S,E156G,F157-,R158-,G181V,P209L,L212S,D215H,A222V,A243-,L244-,S256L,L452M,N703I]-[L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,N460K,F490S] FL.8 573 332 57.9% 0 (consensus) FL.8 573 66 11.5% 1 +[S256L] FL.8 573 21 3.7% 1 +[D1084Y] FL.8 573 15 2.6% 2 +[S256L,E465D] FL.8 573 10 1.7% 1 -[K417N] AY.108 573 147 25.7% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.108 573 143 25.0% 2 +[T19R,T95I,E156G,F157-,R158-,L452R,E484Q,P681R,D950N,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.108 573 69 12.0% 1 +[T19R,T95I,E156G,F157-,R158-,Y248H,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.108 573 22 3.8% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.108 573 16 2.8% 3 +[T19R,T95I,E156G,F157-,R158-,L452R,E484Q,P681R,D950N,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.362 573 353 61.6% 0 +[L452R,L1063F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.362 573 85 14.8% 2 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.362 573 38 6.6% 3 +[V1228A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.362 573 8 1.4% 3 +[+256S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.362 573 6 1.0% 4 +[L5F,Q675H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] GY.5 571 418 73.2% 0 +[E180V,T478R]-[T478K] (consensus) GY.5 571 14 2.5% 1 +[E180V,T478R]-[K417N,T478K] GY.5 571 14 2.5% 1 +[H146K,E180V,T478R]-[H146Q,T478K] GY.5 571 8 1.4% 1 +[E180V,Q218P,T478R]-[T478K] GY.5 571 5 0.9% 1 +[L5F,E180V,T478R]-[T478K] B.1.160.17 571 465 81.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.160.17 571 58 10.2% 1 +[A942T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.17 571 18 3.2% 2 +[S373L,A942T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.17 571 7 1.2% 1 +[G75R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.160.17 571 2 0.4% 1 +[P384S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] EG.5.2 569 329 57.8% 0 +[F456L] (consensus) EG.5.2 569 52 9.1% 2 +[H69-,V70-,F456L] EG.5.2 569 31 5.4% 1 +[F456L,A845S] EG.5.2 569 20 3.5% 2 +[H146K,F456L,A845S]-[H146Q] EG.5.2 569 10 1.8% 1 +[F456L,S691F] XBB.1.5.62 568 292 51.4% 0 (consensus) XBB.1.5.62 568 39 6.9% 1 +[D1118E] XBB.1.5.62 568 21 3.7% 1 +[H1101Y] XBB.1.5.62 568 15 2.6% 1 +[H146K]-[H146Q] XBB.1.5.62 568 14 2.5% 1 +[E583Q] XBB.1.1 568 444 78.2% 0 +[F486S]-[F486P] (consensus) XBB.1.1 568 7 1.2% 2 +[V1228L]-[F486P] XBB.1.1 568 7 1.2% 1 +[F486S,P521T]-[F486P] XBB.1.1 568 6 1.1% 1 +[L5F,F486S]-[F486P] XBB.1.1 568 5 0.9% 1 +[F486S,E1111Q]-[F486P] BF.41 568 411 72.4% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.41 568 27 4.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BF.41 568 17 3.0% 1 +[H69-,V70-,L176F,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.41 568 16 2.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BF.41 568 12 2.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,H1101Y]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] FL.4.5 568 359 63.2% 0 (consensus) FL.4.5 568 24 4.2% 1 +[G181E] FL.4.5 568 15 2.6% 1 +[V952I] FL.4.5 568 14 2.5% 1 +[N856S] FL.4.5 568 11 1.9% 2 +[R190S,P521S] BA.5.3.4 567 395 69.7% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.3.4 567 44 7.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,G769V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.4 567 23 4.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.5.3.4 567 14 2.5% 1 +[H69-,V70-,Q173H,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.3.4 567 9 1.6% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S,P681H] XBB.9 566 442 78.1% 0 +[F486S]-[G252V,F486P] (consensus) XBB.9 566 23 4.1% 1 +[F486S]-[G252V,K417N,F486P] XBB.9 566 17 3.0% 1 +[H146K,F486S]-[H146Q,G252V,F486P] XBB.9 566 8 1.4% 1 +[F486S]-[G252V,L368I,F486P] XBB.9 566 8 1.4% 1 +[S254F,F486S]-[G252V,F486P] BA.1.9 565 458 81.1% 0 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,S704L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] (consensus) BA.1.9 565 15 2.7% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,S704L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,N440K,V445P,N460K,F486P,F490S] BA.1.9 565 13 2.3% 3 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,G339D,S371L,Q493R,G496S,T547K,S704L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.9 565 5 0.9% 1 +[A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,S704L,A831V,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] BA.1.9 565 4 0.7% 1 +[L5F,A67V,H69-,V70-,T95I,V143-,Y145-,N211-,L212I,+214EPE,G339D,S371L,Q493R,G496S,T547K,S704L,N856K,L981F]-[T19I,L24-,P25-,P26-,A27S,V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,T376A,D405N,R408S,V445P,N460K,F486P,F490S] B.1.324 562 256 45.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.324 562 158 28.1% 1 +[V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.324 562 16 2.8% 2 +[I1114L,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.324 562 13 2.3% 1 +[T307I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.324 562 9 1.6% 1 +[M153V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.9 562 476 84.7% 0 +[D80Y,N164T,A222V,A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.9 562 25 4.4% 1 +[D80Y,T95I,N164T,A222V,A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.9 562 14 2.5% 1 +[D80Y,N164T,A222V,A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.9 562 7 1.2% 1 +[D80Y,N164T,A222V,A262S,I1216V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.9 562 5 0.9% 1 +[D80Y,S98F,N164T,A222V,A262S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] FL.3.1 561 435 77.5% 0 (consensus) FL.3.1 561 8 1.4% 1 +[S494P] FL.3.1 561 8 1.4% 1 +[H245Y] FL.3.1 561 7 1.2% 1 +[V1122L] FL.3.1 561 5 0.9% 1 +[H146K]-[H146Q] W.4 561 476 84.8% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) W.4 561 26 4.6% 1 +[A222V,A653V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] W.4 561 8 1.4% 1 +[P9S,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] W.4 561 6 1.1% 1 +[A222V,L1063F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] W.4 561 6 1.1% 1 +[T22I,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.103.2 561 525 93.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.103.2 561 11 2.0% 1 +[T19R,E156G,F157-,R158-,E224A,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.103.2 561 5 0.9% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,T1116I]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.103.2 561 3 0.5% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,Q954H,N969K] AY.103.2 561 3 0.5% 1 +[T19R,D138Y,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.32 559 458 81.9% 0 +[A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.32 559 11 2.0% 1 +[A222V,A1020S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.32 559 8 1.4% 1 +[W152L,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.32 559 5 0.9% 1 +[A222V,A846V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.32 559 4 0.7% 1 +[A222V,V367F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.58 559 479 85.7% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.58 559 18 3.2% 1 +[L18F,G181V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.58 559 14 2.5% 1 +[L18F,A222V,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.58 559 12 2.1% 1 +[L18F,A222V,A771S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.58 559 7 1.3% 1 +[L18F,A222V,T604I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.9.1 558 476 85.3% 0 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.9.1 558 36 6.5% 4 +[V213G,G339D,L452M,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.1 558 7 1.3% 1 +[V213G,H245N,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.1 558 4 0.7% 1 +[V213G,G339D,L452M,Q493R]-[T19I,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.9.1 558 3 0.5% 1 +[V213G,G339D,K417I,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,N460K,F486P,F490S] B.1.177.5 556 461 82.9% 0 +[L18F,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.5 556 21 3.8% 1 +[L18F,T22I,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.5 556 20 3.6% 1 +[L18F,A222V,S689I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.5 556 6 1.1% 1 +[L18F,G184V,A222V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.5 556 6 1.1% 2 +[L18F,A222V,E484Q,S689I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BA.2.74 556 422 75.9% 0 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.2.74 556 16 2.9% 1 +[V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,N440K,V445P,G446S,N460K,F486P,F490S] BA.2.74 556 16 2.9% 4 +[V213G,G339D,L452M,Q493R]-[L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.74 556 8 1.4% 1 +[L5F,V213G,G339D,L452M,Q493R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.2.74 556 8 1.4% 1 +[V213G,G339D,L452M,Q493R]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BM.4.1.1 554 371 67.0% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) BM.4.1.1 554 30 5.4% 2 +[L5F,K147E,W152R,F157L,G181A,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.4.1.1 554 7 1.3% 2 +[K147E,W152R,F157L,I210V,V213G,D215G,G257S,F486S,S494P]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.4.1.1 554 7 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,F486S,S1252F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BM.4.1.1 554 6 1.1% 1 +[L5F,K147E,W152R,F157L,I210V,V213G,G257S,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.391 552 477 86.4% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.391 552 31 5.6% 1 +[V622F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.391 552 4 0.7% 1 +[E471Q]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.391 552 3 0.5% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.391 552 2 0.4% 2 +[S255F,S698L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.83 551 392 71.1% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.83 551 101 18.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.83 551 7 1.3% 1 +[T19R,R21I,E156G,F157-,R158-,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.83 551 4 0.7% 2 +[T19R,E156G,F157-,R158-,G181V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.83 551 3 0.5% 1 +[T19R,E156G,F157-,R158-,L452R,D574Y,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.104 550 355 64.5% 0 +[T19R,T95I,E156G,F157-,R158-,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.104 550 10 1.8% 1 +[T19R,R21I,T95I,E156G,F157-,R158-,L452R,T572I,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.104 550 8 1.5% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,T572I,P681R,A845S,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.104 550 7 1.3% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,T572I,P681R,F888L,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.104 550 6 1.1% 1 +[T19R,T95I,E156G,F157-,R158-,L452R,T572I,P681R,D950N,Q1180K]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] XBB.1.5.47 548 354 64.6% 0 (consensus) XBB.1.5.47 548 11 2.0% 1 +[H146K]-[H146Q] XBB.1.5.47 548 9 1.6% 1 +[H1058Y] XBB.1.5.47 548 8 1.5% 1 -[K417N] XBB.1.5.47 548 7 1.3% 1 +[G219D] FU.2.1 548 464 84.7% 0 +[E180V,T478R,T547I,E619Q]-[T478K] (consensus) FU.2.1 548 7 1.3% 1 +[E180V,Y351F,T478R,T547I,E619Q]-[T478K] FU.2.1 548 5 0.9% 1 +[H146K,E180V,T478R,T547I,E619Q]-[H146Q,T478K] FU.2.1 548 4 0.7% 1 +[E180V,T478R,T547I,E619Q,V963I]-[T478K] FU.2.1 548 3 0.5% 1 +[E180V,T478R,T547I,E619Q]-[K417N,T478K] BA.5.2.53 548 388 70.8% 0 +[H69-,V70-,V213G,G339D,L452R,F486V,A653V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.2.53 548 93 17.0% 1 +[H69-,V70-,V213G,G339D,N450D,L452R,F486V,A653V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.53 548 13 2.4% 1 +[H69-,V70-,V213G,L242F,G339D,L452R,F486V,A653V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.53 548 6 1.1% 3 +[H69-,V70-,V213G,G339D,V445F,N450D,L452R,F486V,T547K,A653V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.2.53 548 5 0.9% 1 +[H69-,V70-,V213G,S247N,G339D,L452R,F486V,A653V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] CH.1.1.10 547 347 63.4% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.10 547 104 19.0% 1 +[K147E,W152R,F157L,N185D,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.10 547 24 4.4% 2 +[W64R,K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.10 547 10 1.8% 3 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,T678-,+679K]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S,N679K] CH.1.1.10 547 4 0.7% 4 +[W64R,K147E,W152R,F157L,I210V,V213G,+255L,G257-,K444T,L452R,F486S,P1162S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] AY.52 545 363 66.6% 0 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,L1141W]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.52 545 78 14.3% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,L1141W]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.52 545 10 1.8% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,A684S,D950N,L1141W]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.52 545 7 1.3% 2 +[T19R,E156G,F157-,R158-,L452R,P681R,L1141W]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.52 545 6 1.1% 1 +[T19R,E156G,F157-,R158-,L452R,P681R,D950N,L1141W,K1181N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] P.1.6 544 446 82.0% 0 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] (consensus) P.1.6 544 25 4.6% 1 +[L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.6 544 15 2.8% 1 +[L5F,L18F,T20N,P26S,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.6 544 13 2.4% 1 +[L18F,T20N,P26S,A27T,D138Y,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] P.1.6 544 9 1.7% 4 +[L18F,T20N,P26S,D138Y,L141F,G142-,V143-,R190S,K417T,E484K,T1027I,V1176F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,N679K,N764K,D796Y,Q954H,N969K] B.1.1.269 542 473 87.3% 0 +[D1084Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.1.269 542 13 2.4% 1 +[T95I,D1084Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.269 542 9 1.7% 1 +[L5F,D1084Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.269 542 4 0.7% 1 +[D936Y,D1084Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.1.269 542 3 0.6% 1 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.3.2 541 400 73.9% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,V445A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3.2 541 18 3.3% 4 +[I210V,V213G,G257S,K356T,V445A]-[V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.2 541 15 2.8% 1 +[K147E,W152R,F157L,I210V,V213G,K356T,V445A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.2 541 11 2.0% 1 +[K147E,W152R,F157L,I210A,V213G,G257S,K356T,V445A]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.2 541 9 1.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,V445A,N703S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] B.1.351.3 541 210 38.8% 0 +[L18F,A67V,D80A,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351.3 541 208 38.4% 1 +[L18F,D80A,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.351.3 541 9 1.7% 4 +[L18F,D80A,D215G,L242-,A243-,L244-,R246-,S247-,Y248-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351.3 541 7 1.3% 4 +[L18F,D80A,D215G,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.351.3 541 6 1.1% 2 +[L18F,D80A,D138N,D215G,L242-,A243-,L244-,E484K,A701V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.16 540 516 95.6% 0 +[N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.258.16 540 4 0.7% 1 +[S112P,N439K]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.16 540 3 0.6% 1 +[N439K,I472V]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.16 540 2 0.4% 1 +[N439K,Q677H]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.258.16 540 1 0.2% 1 +[N439K,A623S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] DJ.1.1 539 298 55.3% 0 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) DJ.1.1 539 73 13.5% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] DJ.1.1 539 54 10.0% 2 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,F486P,F490S] DJ.1.1 539 49 9.1% 1 +[H69-,V70-,V213G,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,R408S,V445P,G446S,F486P,F490S] DJ.1.1 539 3 0.6% 1 +[H69-,V70-,V213G,S255F,G339D,K444N,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] B.3.1 538 498 92.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.3.1 538 16 3.0% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.3.1 538 10 1.9% 1 +[V615I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.3.1 538 2 0.4% 1 +[E96D]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.3.1 538 1 0.2% 1 +[S494P]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] L.1 538 509 94.6% 0 +[M1237T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) L.1 538 7 1.3% 1 +[A262S,M1237T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] L.1 538 5 0.9% 1 +[I1132V,M1237T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] L.1 538 2 0.4% 1 +[P681L,M1237T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] L.1 538 1 0.2% 1 +[P579S,M1237T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] GK.2 536 376 70.1% 0 +[L455F,F456L,V511I] (consensus) GK.2 536 9 1.7% 1 +[L455F,F456L,V511I,P1162S] GK.2 536 9 1.7% 2 +[L5F,F157L,L455F,F456L,V511I] GK.2 536 9 1.7% 1 +[L455F,F456L,V511I,E554D] GK.2 536 8 1.5% 1 +[L455F,F456L,V511I,K1205N] CA.7 534 405 75.8% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486S,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CA.7 534 25 4.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486S,Q613H,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CA.7 534 10 1.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486S,T747I,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CA.7 534 7 1.3% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486S,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P,F490S] CA.7 534 5 0.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,L452R,F486S,P621S,D1199N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] B.1.36.38 533 377 70.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.36.38 533 77 14.4% 1 +[L5F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.38 533 16 3.0% 1 +[L18F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.38 533 11 2.1% 1 +[P384L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.36.38 533 5 0.9% 1 +[V1065A]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.127 530 493 93.0% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.127 530 17 3.2% 1 +[H146Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.127 530 3 0.6% 2 +[H66Q,H146Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.127 530 2 0.4% 1 +[S939F]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.127 530 2 0.4% 1 +[F59S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.69 528 433 82.0% 0 +[A222V,S929T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.177.69 528 15 2.8% 1 +[A222V,G769V,S929T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.69 528 13 2.5% 1 +[A222V,A344S,S929T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.69 528 11 2.1% 1 +[A222V,T385I,S929T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.177.69 528 10 1.9% 1 +[A222V,S640F,S929T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BN.1.3.12 527 422 80.1% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] (consensus) BN.1.3.12 527 23 4.4% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,R408S,V445P,F486P] BN.1.3.12 527 6 1.1% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,Q675H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.12 527 6 1.1% 1 +[K147E,W152R,F157L,N164S,I210V,V213G,G257S,K356T]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] BN.1.3.12 527 5 0.9% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K356T,S940F]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P] CH.1.1.19 526 366 69.6% 0 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] (consensus) CH.1.1.19 526 43 8.2% 1 +[V6F,K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.19 526 21 4.0% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,N856S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.19 526 14 2.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R,F486S,G1219C]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] CH.1.1.19 526 9 1.7% 1 +[K147E,W152R,F157L,I210V,V213G,G257S,K444T,L452R]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,L368I,V445P,F486P,F490S] BA.5.5.3 525 328 62.5% 0 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.5.3 525 52 9.9% 1 +[H69-,V70-,T76I,V213G,G339D,K444R,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.3 525 34 6.5% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.3 525 16 3.0% 1 +[H69-,V70-,T76I,K147E,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.5.3 525 11 2.1% 1 +[H69-,V70-,T76I,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.17 525 393 74.9% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BF.17 525 20 3.8% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,D1139N]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.17 525 10 1.9% 1 +[H49Y,H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.17 525 9 1.7% 1 +[H69-,V70-,V213G,G261V,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] BF.17 525 8 1.5% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,N460K,F486P,F490S] B.4 524 386 73.7% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.4 524 24 4.6% 1 +[T22I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.4 524 7 1.3% 1 +[D1084Y]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.4 524 7 1.3% 1 +[Q675R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.4 524 6 1.1% 1 +[T572I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,D614G,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.1 523 197 37.7% 0 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,I834T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.119.1 523 152 29.1% 1 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,I834T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.1 523 21 4.0% 2 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,I834T,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.1 523 19 3.6% 1 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,I834T,D950N,P1263L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.119.1 523 12 2.3% 2 +[T19R,T95I,E156G,F157-,R158-,A222V,L452R,P681R,I834T]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] BQ.1.1.46 522 358 68.6% 0 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] (consensus) BQ.1.1.46 522 20 3.8% 1 +[H69-,V70-,F157L,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.46 522 13 2.5% 2 +[H69-,V70-,F157L,V213G,T240I,G339D,K444T,L452R,F486V,T547I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.46 522 10 1.9% 2 +[H69-,V70-,F157L,V213G,G339D,P426S,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BQ.1.1.46 522 9 1.7% 1 +[H69-,V70-,F157L,K182I,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,F486P,F490S] BW.1 522 261 50.0% 0 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] (consensus) BW.1 522 111 21.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BW.1 522 33 6.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,N703I]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BW.1 522 26 5.0% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,K417N,V445P,G446S,F486P,F490S] BW.1 522 7 1.3% 1 +[H69-,V70-,V213G,G339D,K444T,L452R,F486V,N641S]-[V83A,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,V445P,G446S,F486P,F490S] BA.5.1.26 521 305 58.5% 0 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] (consensus) BA.5.1.26 521 21 4.0% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,Y1155H]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.26 521 16 3.1% 1 +[H69-,V70-,V213G,G339D,L452R,F486V,V1264L]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] BA.5.1.26 521 15 2.9% 1 +[H69-,V70-,V213G,G339D,L452R,F486V]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,R408S,V445P,G446S,N460K,F486P,F490S] BA.5.1.26 521 15 2.9% 2 +[A67S,H69-,V70-,V213G,G339D,L452R,F486V,A1020S]-[V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,L368I,V445P,G446S,N460K,F486P,F490S] B.1.404 520 414 79.6% 0 -[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) B.1.404 520 14 2.7% 1 +[V308L]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.404 520 9 1.7% 1 +[G1251R]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.404 520 6 1.2% 1 +[T76S]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] B.1.404 520 5 1.0% 1 +[T286I]-[T19I,L24-,P25-,P26-,A27S,V83A,G142D,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,T478K,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.1 520 422 81.2% 0 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] (consensus) AY.9.2.1 520 37 7.1% 1 +[T19R,E156G,F157-,R158-,A222V,L452R,P681R,D950N,R1091L]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.1 520 17 3.3% 1 +[T19R,E156G,F157-,R158-,A222V,K444T,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V213E,G252V,G339H,R346T,L368I,S371F,S373P,S375F,T376A,D405N,R408S,K417N,N440K,V445P,G446S,N460K,S477N,E484A,F486P,F490S,Q498R,N501Y,Y505H,H655Y,N679K,P681H,N764K,D796Y,Q954H,N969K] AY.9.2.1 520 15 2.9% 2 +[T19R,E156G,F157-,R158-,A222V,S373L,G446V,L452R,P681R,D950N]-[T19I,L24-,P25-,P26-,A27S,V83A,Y144-,H146Q,Q183E,V2