COVID-19 Viral Genome Analysis Pipeline COVID-19 Viral Genome Analysis Pipeline home COVID-19 Viral Genome Analysis Pipeline home
COVID-19 Viral Genome Analysis Pipeline
Enabled by data from   gisaid-logo


Tables of Mutating Sites


Last data update: Jan 25, 2021

See analysis on global Spike sequences

Options
Genomic region  
Geographic origin
Filter by
-


Table 1A. Summary of most common amino acid variants in sequences. All sites that vary in >0.3% of our sequence alignment are listed, and if they are in the ACE2 contact region in Spike, the threshold for inclusion is dropped to >0.1%.

Table 1B. Details concerning these most common mutations, including covarying common variants, the codon change leading to the amino acid change, and counts of variants including the geographic origin of the variants.

Table 2. All positions in a selected genomic region are listed, with the frequencies of variant forms in position, the entropy of each position, and the local regional entropy of spanning 10 continuous amino acid segments, to highlight nearby regions of variation.

last modified: Tue Jan 19 11:07 2021



GISAID data provided on this website is subject to GISAID's Terms and Conditions

Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health