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COVID-19 Viral Genome Analysis Pipeline
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Variants
Curated Variants WHO VOI/VOC reference strains
Resources
COV CATNAP COV Spike Feature Embers Frequency Changes in Common Forms hCov-19 variants Distribution Map Most common forms
based on Pango lineage designations SHIVER Tables of Mutating Sites:
Amino acid Frequencies and Entropy XSpike Variant Color Keys Symbols in Sequences
Tools
AnalyzeAlign Geographically Restricted Embers Geographically Restricted Frequency
Changes in Common forms Geographically Restricted Pango
Common Forms Geographically Restricted SHIVER Geographically Restricted XSpike Isotonic Regression Relative Frequency Change
By Geographical Region Sequence Locator Tables of Mutating Sites:
Amino acid Frequencies and Entropy Tracking Mutations Variant Visualizer External tools


Geographically Restricted Frequency Changes in Common Forms

See analysis on SPIKE sequences

Input
Protein
Compute mutations relative to
How many of the most common forms per lineage
Show only forms with at least this many counts
Geographic region only use from
     
do NOT use from