COVID-19 Viral Genome Analysis Pipeline COVID-19 Viral Genome Analysis Pipeline home COVID-19 Viral Genome Analysis Pipeline home
COVID-19 Viral Genome Analysis Pipeline
Enabled by data from   gisaid-logo
Home
Site Map
Variants
Curated Variants WHO VOI/VOC reference strains
Resources
COV CATNAP COV Spike Feature Embers Frequency Changes in Common Forms hCov-19 variants Distribution Map Most common forms
based on Pango lineage designations SHIVER Tables of Mutating Sites:
Amino acid Frequencies and Entropy XSpike Variant Color Keys Symbols in Sequences
Tools
AnalyzeAlign Geographically Restricted Embers Geographically Restricted Frequency
Changes in Common forms Geographically Restricted Pango
Common Forms Geographically Restricted SHIVER Geographically Restricted XSpike Isotonic Regression Relative Frequency Change
By Geographical Region Sequence Locator Tables of Mutating Sites:
Amino acid Frequencies and Entropy Tracking Mutations Variant Visualizer External tools


Geographically Restricted Frequency Changes in Common Forms

See analysis on SPIKE sequences

Input
Protein
Compute mutations relative to
How many of the most common forms per lineage
Show only forms with at least this many counts
Geographic region only use from
     
do NOT use from
     
Collection dates range of days ending on the last sampled date
from/to -
use all
Keep X (Keep sequences that include bad characters, ambiguities, or deletions, denoted 'X')
Break out by lineage yes no
Email results (If the run does not complete, please use the mail back option)

last modified: Mon Jan 8 13:34 2024

GISAID data provided on this website is subject to GISAID's Terms and Conditions
Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy
Dept of Health & Human Services Los Alamos National Institutes of Health