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COVID-19 Viral Genome Analysis Pipeline
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Purpose: Show weblogos, calculate frequency by position, and find variants in an alignment. Explanation.

Genomic region
Positions/range to analyze Total positions ≤ 30, numbers must refer to residues of NC_045512
Positions are coordinates of   sequence
LANL Alignment icon      
  Filter by
Group the sequences

minus Logo options
Logo size pixels  
Max no. of logo stacks per line icon
Y-axis units icon
Color scheme icon
Draw stacks with largest letters on top
Remove symbols from logo icon

Potential N-linked glycosylation sites icon

minus Other options
Downloadable logo files PDF  EPS  SVG 
Combine logos for subsets into a page
Concatenate PDF or EPS logos as a x matrix   (row x column)

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last modified: Sat Jan 9 15:27 2021

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