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COVID-19 Viral Genome Analysis Pipeline
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AnalyzeAlign

Purpose: Show weblogos, calculate frequency by position, and find variants in an alignment. Explanation.

Input
Alignment
Positions/range to analyze Total positions ≤ 30, numbers must refer to residues of NC_045512
Positions are coordinates of   sequence
Sequence filter
Collection date -
Host
Pango lineage designation
in GISAID
Geographic region