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COVID-19 Viral Genome Analysis Pipeline
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Purpose: Show weblogos, calculate frequency by position, and find variants in an alignment. Explanation.

Genomic region
Positions/range to analyze Total positions ≤ 30, numbers must refer to residues of NC_045512
Positions are coordinates of   sequence
LANL Alignment icon

Sequence filter
Collection date -
Geographic region

minus Logo options
Logo size pixels  
Max no. of logo stacks per line icon
Y-axis units icon
Color scheme icon
Draw stacks with largest letters on top
Remove symbols from logo icon


minus Other options
Downloadable logo files PDF  EPS  SVG 
Combine logos for separate results into a page
Concatenate PDF or EPS logos as a x matrix   (row x column)
Email results

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last modified: Tue Mar 16 17:04 2021

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