Run Geographically Restricted Embers
Frequencies of Key Pango Lineage Groupings Over Time |
1111 1111111111222222222222222222222222223333334444444444444455556666667777788999990112 1122222266777893444455559111111111112444444455555893477770014457788999900471577780016955556882176 8904567979056058234526780122223444452234678901238999613565870627846036815704557911464669049127864 LTTLPPATAHVGTDTDGVYYWEFRRNL---VR---DALALRSYLTPGDWVTGRSSSTDRKNGLSTEFFQGQNYTADHQQNPASTNDNTDQNLSTDVV Counts Percent Lineage .I..............D..........SGRG.---................D.FPFANSNK._NKA..R.RYH..GY..KH...KY...HK...... 0 0.00% Omicron_BA.2+212SGR .I.........................---G.---................D.FPFANSNK.RNKAV._.RYH..GY..KH...KY...HK...... 50 0.02% Omicron_BA.4andBA.5 .I..............D..........---G.---................D.FPFANSNK.QNKA..R.RYH..GY..KH.L.KY...HK...... 1 0.00% Omicron_BA.2+L452Q+S704L_BA.2.12.1 .I..__..........D..........---G.---................D.FPFANSNK._NKA..R.RYH..GY..KH...KY...HK...... 0 0.00% Omicron_BA.2+P25_,P26_ .I..--..........D..........---G.---................D.FPFANSN..MNKA..R.RYH..GY..KH...KY...HK...... 0 0.00% Omicron_BA.2+L452M .I..............D..........---G.---................D.FPFANSTK..NKA..R.RYH..GY..KH...KY...HK...... 0 0.00% Omicron_BA.2+K417T .I..--..........D..........---G.---................D.FPFANSN.._NKA..R.RYH..GY..KH...KY...HK...... 2 0.00% Omicron_BA.2 ........V--...I............---..---................DKLPF.........A..R.RYH..GY..KH...KY...HK...... 1 0.00% Omicron_BA.1.1 ........V--...I............---..---................D_.PF___..._..A..R.RYHK.GY..KH...KYK..HKF..... 0 0.00% Omicron_BA.1 ........V--...I............---..EPE................D_.PF......_..A..R.RYH..GY..KH...KY...HK...... 1 0.00% Omicron_BA.1 .R........_..........--G...---..---............._.........._..R.K..........G...*........N........ 0 0.00% Delta+FurinRelated .R........_..........--G...---..---............._.........._..R.K..........G..*.........N........ 0 0.00% Delta+FurinRelated .R........_..........--G...---..---............._.........._..R.K..........G.*..........N........ 0 0.00% Delta+FurinRelated .R........_..........--G...---..---............._.........._..R.K..........G....H.......N........ 0 0.00% Delta+FurinRelated .R........_..........--G...---..---............._.........._..R.K..........GY...........N........ 0 0.00% Delta+FurinRelated .R........_..........G--...---..---............._.........._..R.K..........G...*........N........ 0 0.00% Delta+FurinRelated .R........_..........G--...---..---............._.........._..R.K..........G..*.........N........ 0 0.00% Delta+FurinRelated .R........_..........G--...---..---............._.........._..R.K..........G.*..........N........ 0 0.00% Delta+FurinRelated .R........_..........G--...---..---............._.........._..R.K..........G....H.......N........ 0 0.00% Delta+FurinRelated .R........_..........G--...---..---............._.........._..R.K..........GY...........N........ 0 0.00% Delta+FurinRelated .R........_...I....H.G--...---..---.V..........._.........._..R.K..........G____R.......N........ 0 0.00% Delta+Y145H,A222V .R........_...I....H.--G...---..---.V..........._.........._..R.K..........G____R.......N........ 0 0.00% Delta+Y145H,A222V .R........_..._......G--...---..---.V...........__........._..R.K..........G____R.......N......._ 0 0.00% Delta+T95_,A222V .R........_..._......--G...---..---.V...........__........._..R.K..........G____R.......N......._ 0 0.00% Delta+T95_,A222V .R....._.._..........G--...---..---._.......__.._._........_..R.K_.........G____R.......N......._ 0 0.00% Delta .R....._.._..........--G...---..---._.......__.._._........_..R.K_.........G____R.......N......._ 0 0.00% Delta ........................S..---..---..............................K.....Y...GY...*..............F. 0 0.00% Gamma+FurinRelated ........................S..---..---..............................K.....Y...GY..*...............F. 0 0.00% Gamma+FurinRelated ........................S..---..---..............................K.....Y...GY.*................F. 0 0.00% Gamma+FurinRelated ........................S..---..---..............................K.....Y...GY*.................F. 0 0.00% Gamma+FurinRelated ........................S..---..---..............................K.....Y...GY____..............F. 0 0.00% Gamma ..............I...SN.......---..---.................K............K.....Y...G....H.......N........ 0 0.00% Mu ...........VI..............---..---......-------..............Q....S.......G...........N......... 0 0.00% Lambda .............A.............---..---G.---...................N.....K.....Y...G.....V............... 0 0.00% Beta .._......--.......-._......---..---....................................Y..DG....H.._........A.H.. 0 0.00% Alpha .._......--.......-._......---..---....................................Y..DG....R..I........A.H.. 0 0.00% Alpha .._......--......._._......---..---....................................Y..DG....H..I........A.H.. 0 0.00% Alpha .._......--.......-._......---..---....................................Y..DG....H..I........A.H.. 1 0.00% Alpha
Missing: 3894 patterns, for a total of 234811 sequences 1111 1111111111222222222222222222222222223333334444444444444455556666667777788999990112 1122222266777893444455559111111111112444444455555893477770014457788999900471577780016955556882176 8904567979056058234526780122223444452234678901238999613565870627846036815704557911464669049127864 LTTLPPATAHVGTDTDGVYYWEFRRNL---VR---DALALRSYLTPGDWVTGRSSSTDRKNGLSTEFFQGQNYTADHQQNPASTNDNTDQNLSTDVV Counts Percent NearbyLineage(s) _I_---S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 77695 33.08% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 50046 21.31% _I_---S_________D_-___L____---E_---___________V____HTFPFANSNKSRNKAPS__RYH__GY__KH___KY___HK______ 23583 10.04% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NRAPS__RYH__GY__KH___KY___HK______ 17128 7.29% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH_L_KY___HK______ 10027 4.27% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NRAPS__RYH__GY__KHV__KY___HK______ 6694 2.85% _I_---S_________D_-________---E_---____________G___HTFPFANSNKS_NRAPS__RYH__GY__KH___KY___HK______ 3707 1.58% _I_---S_________D_-___L____---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 3166 1.35% _I_---S_________D___R_L____---G_---________________HTFPFANSNKSRNKAS___RYH__GY__KH___KY___HK______ 1753 0.75% _I_---S_________D_-________---E_---_______H___V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 1531 0.65% _I_---S__--_____D_-___SG_-I---G_---________________HTFPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 1511 0.64% _I_---S_________D_-________---E_---____________G___HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 1203 0.51% _I_---S__--_____D_-___SG___---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 1014 0.43% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPP__RYH__GY__KRV__KY___HK______ 916 0.39% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NRAPS__RYHI_GY__KH___KY___HK______ 880 0.37% _I_---S__--_____D_-___SG_-I---G_---________________H_FPFAN_NKSWNKKP___RYH_VGY__KR___KY___HK______ 748 0.32% _I_---S_________D_-________---E_---___________VG___HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 646 0.28% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NRAPS__RYH__GYK_KH___KY___HK______ 590 0.25% _I__S___________D_-__G--__S---__---HV_--____________SFPFANSNKSRNKAP___RYH__GY__KH___KY___HK______ 577 0.25% _I_---S__--_____D_-___SG_-I---G_---________________H_FPFANS_KSWNKKP___RYH_VGY__KR___KY___HK______ 540 0.23% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NIAPS__RYH__GY__KH___KY___HK______ 538 0.23% _I_---S_________D_-___L____---E_---___________V____HTFPFANSNKSRNKAPS__RYH__GY__KH_L_KY___HK______ 487 0.21% _I_---S_________D__________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 454 0.19% _I_---S__--_____D_-______-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 444 0.19% _I_---S_________D_-________---E_---____________G___HTFP_-NSNKS_N_APS__RYH__GY__KH___KY___HK______ 432 0.18% ___---S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 415 0.18% _I_---S_________D_-________---E_---___________V____HTFPFANS_KS_NKAPS__RYH__GY__KH___KY___HK______ 410 0.17% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KHV__KY___HK______ 393 0.17% _I_---S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR_L_KY___HK______ 352 0.15% _I____S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNK_P___RYH_VGY__KR___KY___HK______ 336 0.14% _I_---S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__K-___KY___HK______ 327 0.14% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY_HKH___KY___HK______ 300 0.13% _I_---S_________D_-________---E_---___________V____HTFPFAN_NKS_NKAPS__RYH__GY__KH___KY___HK______ 277 0.12% _I_---S__--___________SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 263 0.11% _I_---S_________D_-________---E_---___________V____HTFPFANSNKS_NRAPS__RYH__GY__KH_L_KY___HK______ 256 0.11% _I_---S_S_______D_-________---E_---___________V____HTFPFANSNKS_NRAPS__RYH__GY__KHV__KY___HK______ 251 0.11% _I__S___________D_-__G--__S---__---HV_--_____________FPFANSNKSMNKAP___RYH__GY__KH___KY___HK______ 239 0.10% _I_---S_________D_-________---E_YRR___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH_L_KY___HK______ 238 0.10% _I_---S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK_____L 236 0.10% _I_---S__--_____D_-___S__-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 235 0.10% _L_---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 224 0.10% _I_---S_________D_-________---E_---______N____V____HTFPFANSNKS_NRAPS__RYH__GY__KH___KY___HK______ 211 0.09% _I_---S_________D_-________---E_---___________V____HTFPFANSNKSRNKAPS__RYH__GY__KH___KY___HK______ 204 0.09% _I_---S_________D_-________---E_---H__________V____HTFPFANSNKS_NRAPS__RYH__GY__KH_L_KY___HK______ 204 0.09% _I_---S_______I_D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 199 0.08% _I_---S_________D_____L____---E_---___________V____HTFPFANSNKSRNKAPS__RYH__GY__KH___KY___HK______ 199 0.08% _I_---S__--_____D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY_HKR___KY___HK______ 198 0.08% ___---S_________D_-________---E_---___________V____HTFPFANSNKS_NKAPS__RYH__GY__KH___KY___HK______ 195 0.08% _I_---S__--___I_D_-___SG_-I---G_---________________H_FPFANSNKSWNKKP___RYH_VGY__KR___KY___HK______ 189 0.08% _I_---S_________D_-___L____---E_---___________V____HTFPFANSNKSWNKAPS__RYH__GY__KH___KY___HK______ 175 0.07%Download