COVID-19 Viral Genome Analysis Pipeline
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Relative Frequency Change By Geographical Region
Last update: Mar 4, 2021
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Continent
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date V/(V+A) V+A Date V/(V+A) V+A Sample V/(V+A) p-val
Asia Apr 4 0.001 3763 Apr 18 0.012 15029 Feb 24 0.01 0.000000
Europe Mar 21 0.000 9114 Apr 4 0.324 321030 Feb 25 0.32 0.000000
North-America Mar 24 0.000 8992 Apr 7 0.004 104028 Feb 25 0.00 0.000000
Oceania Jul 7 0.001 3624 Jul 21 0.012 5974 Feb 25 0.01 0.000000
South-America Oct 12 0.001 3755 Oct 26 0.028 1301 Feb 16 0.03 0.000000
Country
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date V/(V+A) V+A Date V/(V+A) V+A Sample V/(V+A) p-val
Australia Jul 7 0.001 3259 Jul 21 0.008 5713 Feb 25 0.01 0.000001
Austria Oct 29 0.004 841 Nov 12 0.153 608 Feb 2 0.15 0.000000
Belgium Jul 21 0.002 1221 Aug 4 0.136 5049 Feb 25 0.13 0.000000
Brazil Nov 23 0.002 1740 Dec 7 0.017 402 Feb 11 0.02 0.000556
Canada Apr 10 0.002 3006 Apr 24 0.011 8531 Jan 29 0.01 0.000000
Czech-Republic Nov 9 0.006 543 Nov 23 0.070 86 Jan 19 0.06 0.000332
Czech-republic Nov 9 0.006 543 Nov 23 0.070 86 Jan 19 0.06 0.000332
Denmark Aug 10 0.008 2565 Aug 24 0.476 43677 Feb 15 0.47 0.000000
Finland Oct 23 0.004 761 Nov 6 0.055 693 Feb 6 0.05 0.000000
France May 24 0.002 1951 Jun 7 0.120 3801 Feb 22 0.12 0.000000
Germany Aug 14 0.002 2148 Aug 28 0.343 1713 Feb 16 0.34 0.000000
Hong-Kong Sep 11 0.005 602 Sep 25 0.034 412 Jan 3 0.03 0.000624
Iceland Aug 17 0.005 596 Aug 31 0.804 2704 Jan 6 0.80 0.000000
India Aug 21 0.001 3807 Sep 4 0.014 643 Jan 31 0.01 0.000004
Ireland Jul 23 0.004 693 Aug 6 0.343 2186 Feb 11 0.34 0.000000
Israel Dec 17 0.010 395 Dec 31 0.052 534 Jan 25 0.04 0.000370
Italy Aug 18 0.004 1062 Sep 1 0.441 3487 Feb 23 0.44 0.000000
Latvia Aug 24 0.031 128 Sep 7 0.168 161 Jan 22 0.14 0.000179
Lithuania Sep 12 0.072 153 Sep 26 0.849 458 Jan 20 0.78 0.000000
Luxembourg Sep 26 0.009 334 Oct 10 0.244 2752 Jan 20 0.23 0.000000
Mexico Jan 1 0.003 911 Jan 15 0.019 207 Feb 10 0.02 0.025119
Netherlands Aug 9 0.001 2260 Aug 23 0.374 7387 Feb 16 0.37 0.000000
New-Zealand Oct 2 0.007 454 Oct 16 0.113 151 Feb 23 0.11 0.000000
Norway Jul 31 0.026 196 Aug 14 0.180 1158 Feb 17 0.15 0.000000
Poland Dec 22 0.016 314 Jan 5 0.091 507 Feb 23 0.07 0.000004
Portugal Nov 7 0.004 1352 Nov 21 0.519 813 Feb 10 0.51 0.000000
Russia Nov 6 0.003 1201 Nov 20 0.023 216 Feb 9 0.02 0.005874
Singapore Oct 26 0.002 1376 Nov 9 0.020 345 Feb 24 0.02 0.000844
South-Africa Sep 28 0.002 1655 Oct 12 0.025 400 Jan 19 0.02 0.000012
Spain Mar 24 0.004 852 Apr 7 0.498 3228 Feb 16 0.49 0.000000
Sweden Aug 27 0.003 911 Sep 10 0.271 1335 Feb 21 0.27 0.000000
Switzerland Jul 30 0.003 1333 Aug 13 0.303 8861 Feb 18 0.30 0.000000
USA Mar 28 0.000 9645 Apr 11 0.004 91249 Feb 25 0.00 0.000000
United-Arab-Emirates Sep 20 0.002 1531 Oct 4 0.111 235 Jan 20 0.11 0.000000
UK Mar 31 0.000 8380 Apr 14 0.320 208546 Feb 21 0.32 0.000000
Subcountry
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date V/(V+A) V+A Date V/(V+A) V+A Sample V/(V+A) p-val
Australia_NSW Sep 24 0.002 1272 Oct 8 0.029 408 Feb 25 0.03 0.000008
Australia_Victoria Jul 29 0.001 5279 Aug 12 0.009 1472 Feb 13 0.01 0.000001
Australia_Western-Australia Oct 20 0.008 373 Nov 3 0.093 54 Feb 21 0.08 0.001130
Austria_St Dec 22 0.050 60 Jan 5 0.267 30 Jan 29 0.22 0.005467
Austria_Styria Dec 22 0.058 52 Jan 5 0.267 30 Jan 29 0.21 0.015022
Austria_Upper-Austria Dec 26 0.750 16 Jan 9 0.065 31 Feb 1 -0.69 0.000003
Belgium_Ghent Oct 27 0.028 106 Nov 10 0.356 191 Feb 1 0.33 0.000000
Belgium_Liege Sep 7 0.008 399 Sep 21 0.109 1211 Feb 21 0.10 0.000000
Brazil_Sao-Paulo Jan 14 0.005 619 Jan 28 0.056 54 Feb 11 0.05 0.008227
Canada_British-Columbia Sep 27 0.002 1970 Oct 11 0.009 2570 Jan 29 0.01 0.000998
Canada_Ontario Apr 10 0.012 408 Apr 24 0.037 1410 Jan 27 0.02 0.009416
Denmark_Hovedstaden Aug 10 0.018 942 Aug 24 0.516 18867 Feb 15 0.50 0.000000
Denmark_Midtjylland Aug 10 0.012 250 Aug 24 0.515 6675 Feb 15 0.50 0.000000
Denmark_Nordjylland Aug 31 0.009 317 Sep 14 0.439 4022 Feb 15 0.43 0.000000
Denmark_Sjaelland Aug 31 0.044 315 Sep 14 0.558 5802 Feb 15 0.51 0.000000
Denmark_Syddanmark Aug 24 0.016 315 Sep 7 0.339 7055 Feb 15 0.32 0.000000
Finland_Uusimaa Oct 23 0.004 726 Nov 6 0.055 692 Jan 26 0.05 0.000000
France_Auvergne Sep 3 0.005 602 Sep 17 0.153 354 Jan 25 0.15 0.000000
France_Auvergne-Rhone-Alpes Sep 3 0.005 602 Sep 17 0.153 353 Jan 25 0.15 0.000000
France_Auvergne-Rhone-Alpes_Lyon Sep 4 0.009 318 Sep 18 0.158 285 Jan 1 0.15 0.000000
France_Bretagne Aug 31 0.037 81 Sep 14 0.124 186 Feb 15 0.09 0.040839
France_Ile-de-France Aug 3 0.005 557 Aug 17 0.066 798 Feb 16 0.06 0.000000
France_Occitanie Aug 31 0.016 192 Sep 14 0.181 177 Jan 18 0.17 0.000000
France_Pays-De-Loire Jan 7 0.625 24 Jan 21 0.111 18 Jan 27 -0.51 0.001222
France_Pays-de-Loire Jan 7 0.625 24 Jan 21 0.111 18 Jan 27 -0.51 0.001222
France_Provence-Alpes-Cote-d-Azur Aug 12 0.006 536 Aug 26 0.142 374 Feb 11 0.14 0.000000
Germany_Baden-Wurttemberg Nov 9 0.009 319 Nov 23 0.137 73 Feb 1 0.13 0.000005
Germany_Berlin Sep 20 0.019 159 Oct 4 0.371 105 Feb 4 0.35 0.000000
Germany_Hamburg Aug 26 0.004 788 Sep 9 0.179 56 Jan 31 0.17 0.000000
Germany_Hesse Aug 14 0.057 53 Aug 28 0.348 23 Feb 2 0.29 0.002213
Germany_Munich Nov 3 0.013 230 Nov 17 0.388 67 Jan 8 0.38 0.000000
Germany_North-Rhine-Westphalia Sep 10 0.006 486 Sep 24 0.253 304 Jan 18 0.25 0.000000
Germany_Saxony Dec 18 0.081 37 Jan 1 0.483 263 Feb 16 0.40 0.000001
Germany_Saxony-Anhalt Dec 20 0.200 15 Jan 3 0.486 259 Feb 16 0.29 0.034769
Germany_Schleswig-Holstein Nov 2 0.024 123 Nov 16 0.497 308 Jan 19 0.47 0.000000
Iceland_Reykjavik Aug 17 0.005 596 Aug 31 0.804 2704 Jan 6 0.80 0.000000
India_Telangana Sep 11 0.004 747 Sep 25 0.100 40 Dec 25 0.10 0.000180
Ireland_Cavan Oct 5 0.457 35 Oct 19 0.080 50 Feb 8 -0.38 0.000077
Ireland_Clare Nov 22 0.130 23 Dec 6 0.467 15 Feb 1 0.34 0.030221
Ireland_Cork Oct 7 0.139 36 Oct 21 0.542 107 Feb 3 0.40 0.000016
Ireland_Dublin Aug 1 0.009 347 Aug 15 0.328 667 Feb 11 0.32 0.000000
Ireland_Kildare Sep 7 0.097 31 Sep 21 0.291 103 Feb 3 0.19 0.032038
Ireland_Limerick Oct 6 0.075 53 Oct 20 0.600 35 Jan 27 0.52 0.000000
Ireland_Louth Sep 9 0.094 32 Sep 23 0.477 149 Feb 10 0.38 0.000043
Ireland_Wexford Dec 10 0.562 16 Dec 24 0.089 45 Feb 2 -0.47 0.000278
Ireland_Wicklow Sep 18 0.050 60 Oct 2 0.422 83 Feb 3 0.37 0.000000
Italy_Abruzzo Dec 7 0.028 107 Dec 21 0.286 576 Feb 19 0.26 0.000000
Italy_Apulia Aug 28 0.022 137 Sep 11 0.566 279 Feb 5 0.54 0.000000
Italy_Apulia_Bari Aug 28 0.037 81 Sep 11 0.242 62 Feb 4 0.20 0.000292
Italy_Campania Aug 23 0.010 300 Sep 6 0.467 1729 Feb 23 0.46 0.000000
Italy_Friuli-Venezia-Giulia_Trieste Dec 18 0.562 16 Jan 1 0.088 34 Feb 19 -0.47 0.000602
Italy_Lazio Aug 20 0.033 90 Sep 3 0.523 151 Feb 22 0.49 0.000000
Italy_Veneto Aug 23 0.011 261 Sep 6 0.535 155 Jan 14 0.52 0.000000
Italy_Veneto_Padova Oct 22 0.030 99 Nov 5 0.500 36 Jan 14 0.47 0.000000
Italy_Veneto_Verona Aug 28 0.025 162 Sep 11 0.636 22 Nov 30 0.61 0.000000
Lithuania_Kauno-apskritis Sep 12 0.159 69 Sep 26 0.938 32 Jan 8 0.78 0.000000
Netherlands_Drenthe Nov 28 0.188 16 Dec 12 0.618 123 Feb 14 0.43 0.002145
Netherlands_Friesland Nov 27 0.045 66 Dec 11 0.411 246 Feb 8 0.37 0.000000
Netherlands_Gelderland Sep 19 0.011 281 Oct 3 0.509 638 Feb 14 0.50 0.000000
Netherlands_Groningen Nov 23 0.870 23 Dec 7 0.380 179 Feb 12 -0.49 0.000008
Netherlands_Limburg Aug 23 0.023 131 Sep 6 0.394 703 Feb 12 0.37 0.000000
Netherlands_Limburg_Maastricht Nov 17 0.150 20 Dec 1 0.426 47 Jan 26 0.28 0.047590
Netherlands_Noord-Brabant Sep 28 0.013 386 Oct 12 0.271 955 Feb 14 0.26 0.000000
Netherlands_Noord-Holland Sep 1 0.019 157 Sep 15 0.351 852 Feb 14 0.33 0.000000
Netherlands_Overijssel Sep 7 0.036 83 Sep 21 0.571 364 Feb 14 0.54 0.000000
Netherlands_Utrecht Aug 25 0.020 148 Sep 8 0.363 1376 Feb 16 0.34 0.000000
Netherlands_Zeeland Dec 17 0.043 70 Dec 31 0.190 231 Feb 12 0.15 0.002205
Netherlands_Zuid-Holland Aug 24 0.012 410 Sep 7 0.365 1287 Feb 10 0.35 0.000000
Netherlands_Zuid-holland Aug 24 0.012 410 Sep 7 0.365 1287 Feb 10 0.35 0.000000
New-Zealand_Auckland Oct 6 0.029 103 Oct 20 0.179 67 Feb 5 0.15 0.001392
Norway_Rogaland Sep 21 0.148 27 Oct 5 0.564 39 Jan 19 0.42 0.000810
Norway_Troms-og-Finnmark Oct 14 0.125 24 Oct 28 0.432 37 Feb 1 0.31 0.012675
South-Africa_Eastern-Cape Oct 8 0.267 15 Oct 22 0.000 44 Dec 9 -0.27 0.002999
South-Africa_Western-Cape Nov 5 0.008 358 Nov 19 0.096 52 Jan 11 0.09 0.001139
Spain_Aragon Sep 29 0.120 50 Oct 13 0.681 47 Jan 29 0.56 0.000000
Spain_Aragon_Zaragoza Sep 29 0.353 17 Oct 13 0.750 28 Jan 16 0.40 0.012675
Spain_Balear-Islands_Palma-de-Mallorca Oct 17 0.778 18 Oct 31 0.426 169 Feb 12 -0.35 0.005577
Spain_Basque-Country Jun 29 0.014 216 Jul 13 0.815 124 Oct 27 0.80 0.000000
Spain_Basque-Country_San-Sebastian Sep 1 0.036 83 Sep 15 0.795 83 Oct 27 0.76 0.000000
Spain_Cantabria Sep 3 0.625 16 Sep 17 0.269 67 Jan 18 -0.36 0.016043
Spain_Catalonia Sep 19 0.222 18 Oct 3 0.700 30 Dec 30 0.48 0.002445
Spain_Catalunya Jul 6 0.019 157 Jul 20 0.581 806 Feb 16 0.56 0.000000
Spain_Catalunya_Barcelona Aug 9 0.143 28 Aug 23 0.862 29 Feb 3 0.72 0.000000
Spain_Com-Valenciana Jun 27 0.023 393 Jul 11 0.419 74 Jan 30 0.40 0.000000
Spain_La-Rioja Sep 13 0.028 107 Sep 27 1.000 18 Jan 26 0.97 0.000000
Spain_La-Rioja_Logrono Sep 13 0.040 75 Sep 27 1.000 18 Jan 26 0.96 0.000000
Spain_Madrid Aug 1 0.009 340 Aug 15 0.791 527 Feb 1 0.78 0.000000
Spain_Madrid_Madrid Aug 1 0.052 58 Aug 15 0.823 462 Jan 21 0.77 0.000000
Spain_Navarra Dec 10 0.111 27 Dec 24 0.473 112 Jan 26 0.36 0.000410
Sweden_Halland Dec 30 0.031 98 Jan 13 0.342 79 Feb 15 0.31 0.000000
Sweden_Orebro Sep 27 0.055 55 Oct 11 0.368 19 Feb 3 0.31 0.002004
Sweden_Ostergotland Sep 27 0.038 79 Oct 11 0.455 66 Jan 27 0.42 0.000000
Sweden_Skane Dec 28 0.114 70 Jan 11 0.466 103 Feb 18 0.35 0.000001
Sweden_Stockholm Oct 21 0.016 252 Nov 4 0.193 218 Feb 10 0.18 0.000000
Sweden_Uppsala Dec 14 0.078 103 Dec 28 0.619 21 Feb 8 0.54 0.000000
Sweden_Vasternorrland Jan 3 0.077 52 Jan 17 0.579 19 Feb 12 0.50 0.000024
Sweden_Vastra-Gotaland Nov 5 0.030 135 Nov 19 0.495 103 Feb 10 0.47 0.000000
Switzerland_Aargau Sep 2 0.083 84 Sep 16 0.360 623 Feb 11 0.28 0.000000
Switzerland_Basel-Land Aug 4 0.012 255 Aug 18 0.322 797 Feb 10 0.31 0.000000
Switzerland_Basel-Landschaft Aug 4 0.023 131 Aug 18 0.328 713 Feb 10 0.31 0.000000
Switzerland_Basel-Stadt Aug 9 0.008 371 Aug 23 0.268 477 Feb 10 0.26 0.000000
Switzerland_Bern Aug 22 0.024 205 Sep 5 0.276 981 Feb 11 0.25 0.000000
Switzerland_GraubA1_4nden Sep 30 0.080 50 Oct 14 0.538 26 Dec 11 0.46 0.000019
Switzerland_Ticino Oct 13 0.088 34 Oct 27 0.478 67 Feb 9 0.39 0.000062
Switzerland_Vaud Aug 18 0.032 93 Sep 1 0.376 476 Feb 15 0.34 0.000000
Switzerland_Zurich Aug 17 0.013 231 Aug 31 0.410 1225 Feb 11 0.40 0.000000
USA_CA Sep 22 0.000 6162 Oct 6 0.008 6878 Feb 19 0.01 0.000000
USA_CA_San-Diego Oct 30 0.001 2024 Nov 13 0.016 1029 Jan 30 0.01 0.000008
USA_Massachusetts Jan 12 0.001 2243 Jan 26 0.012 170 Feb 9 0.01 0.042835
USA_NY Aug 25 0.001 3486 Sep 8 0.005 7777 Feb 23 0.00 0.000830
USA_South-Dakota Jul 7 0.200 15 Jul 21 0.017 60 Feb 1 -0.18 0.023584
USA_Texas Aug 19 0.000 6639 Sep 2 0.004 8381 Feb 9 0.00 0.000024
USA_WA Dec 20 0.001 5945 Jan 3 0.005 1024 Feb 25 0.00 0.002579
USA_Wyoming Dec 19 0.008 488 Jan 2 0.000 775 Feb 16 -0.01 0.022120
United-Arab-Emirates_Abu-Dhabi Sep 20 0.002 1332 Oct 4 0.111 235 Jan 20 0.11 0.000000
UK_England Mar 31 0.001 5994 Apr 14 0.287 176607 Feb 21 0.29 0.000000
UK_England_ALDP Jun 13 0.001 2036 Jun 27 0.333 46093 Feb 19 0.33 0.000000
UK_England_BIRM Aug 30 0.013 228 Sep 13 0.479 923 Feb 17 0.47 0.000000
UK_England_Bristol Dec 11 0.001 3041 Dec 25 0.127 55 Jan 31 0.13 0.000000
UK_England_Cambridge Aug 6 0.001 4953 Aug 20 0.292 2184 Feb 16 0.29 0.000000
UK_England_CAMC Jul 21 0.012 253 Aug 4 0.242 25202 Feb 18 0.23 0.000000
UK_England_Exeter Sep 10 0.020 248 Sep 24 0.764 475 Feb 7 0.74 0.000000
UK_England_LCST Dec 2 0.027 111 Dec 16 0.562 32 Feb 7 0.54 0.000000
UK_England_Liverpool Sep 27 0.002 1384 Oct 11 0.753 911 Feb 9 0.75 0.000000
UK_England_London Sep 10 0.003 988 Sep 24 0.198 4852 Feb 18 0.20 0.000000
UK_England_MILK Jul 16 0.004 957 Jul 30 0.251 34445 Feb 17 0.25 0.000000
UK_England_Northampton Aug 27 0.002 1456 Sep 10 0.447 2214 Feb 11 0.45 0.000000
UK_England_Norwich Oct 9 0.006 657 Oct 23 0.382 1552 Feb 12 0.38 0.000000
UK_England_Nottingham Jun 2 0.004 803 Jun 16 0.627 1654 Feb 16 0.62 0.000000
UK_England_Oxford Nov 5 0.004 681 Nov 19 0.196 1881 Feb 2 0.19 0.000000
UK_England_Portsmouth Sep 16 0.012 335 Sep 30 0.205 1188 Feb 14 0.19 0.000000
UK_England_QEUH Aug 2 0.007 845 Aug 16 0.400 28162 Feb 21 0.39 0.000000
UK_England_Sheffield Sep 1 0.002 1225 Sep 15 0.470 2010 Feb 18 0.47 0.000000
UK_England_TFCI Aug 1 0.014 210 Aug 15 0.188 1769 Feb 16 0.17 0.000000
UK_Northern-Ireland Jul 26 0.005 832 Aug 9 0.301 1198 Feb 12 0.30 0.000000
UK_Scotland Aug 4 0.001 4177 Aug 18 0.531 9080 Feb 17 0.53 0.000000
UK_Wales Aug 6 0.001 4908 Aug 20 0.665 16321 Feb 18 0.66 0.000000
last modified: Tue Dec 22 17:31 2020
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