COVID-19 Viral Genome Analysis Pipeline COVID-19 Viral Genome Analysis Pipeline home COVID-19 Viral Genome Analysis Pipeline home
COVID-19 Viral Genome Analysis Pipeline
Enabled by data from   gisaid-logo


Relative Frequency Change By Geographical Region

Last update: Nov 22, 2020

Spike 222

Go to the tool and explanation
Download: Plots and data


Continent

                           Onset    |--Before-|   Delay   |--After--|   Last    Delta   Fisher
                  Location  Date     V/(V+A) V+A   Date    V/(V+A) V+A   Sample  V/(V+A)  p-val
                      Asia  Aug 10   0.000  8714   Aug 24  0.011   565   Nov  9   0.01 0.000008
                    Europe  Mar 21   0.000  7639   Apr  4  0.284 85629   Nov 29   0.28 0.000000
             North-America  Mar 24   0.000  8091   Apr  7  0.002 22240   Oct 29   0.00 0.000497
                   Oceania  Jul 29   0.001  7184   Aug 12  0.019  1659   Nov 10   0.02 0.000000



Country

                           Onset    |--Before-|   Delay   |--After--|   Last    Delta   Fisher
                  Location  Date     V/(V+A) V+A   Date    V/(V+A) V+A   Sample  V/(V+A)  p-val
                 Australia  Jul 29   0.001  6817   Aug 12  0.012  1517   Nov  2   0.01 0.000000
                   Belgium  Jul 29   0.003   900   Aug 12  0.048   187   Nov  2   0.04 0.000015
                   Denmark  Aug 10   0.008  2523   Aug 24  0.293  5721   Nov  6   0.29 0.000000
                    France  Aug  1   0.003  1141   Aug 15  0.134   359   Nov  2   0.13 0.000000
                   Germany  Sep 14   0.012   510   Sep 28  0.226    31   Oct  6   0.21 0.000001
                   Ireland  Aug  1   0.010   290   Aug 15  0.527   188   Oct 22   0.52 0.000000
               Netherlands  Aug  9   0.001  2133   Aug 23  0.245   613   Oct 30   0.24 0.000000
               New-Zealand  Oct  2   0.007   454   Oct 16  0.098    41   Nov 10   0.09 0.001190
                    Norway  Jul 31   0.029   173   Aug 14  0.085   258   Oct 30   0.06 0.024074
                     Spain  Mar 24   0.004   726   Apr  7  0.238   369   Sep 20   0.23 0.000000
                    Sweden  Aug 27   0.004   771   Sep 10  0.235    17   Sep 27   0.23 0.000005
               Switzerland  Jul 30   0.003  1313   Aug 13  0.337   999   Oct 22   0.33 0.000000
                       USA  Apr 20   0.000 14827   May  4  0.002 16020   Oct 29   0.00 0.000012
                        UK  Mar 31   0.000  8346   Apr 14  0.345 62402   Nov 29   0.34 0.000000



Subcountry

                           Onset    |--Before-|   Delay   |--After--|   Last    Delta   Fisher
                  Location  Date     V/(V+A) V+A   Date    V/(V+A) V+A   Sample  V/(V+A)  p-val
        Australia_Victoria  Jul 29   0.001  5184   Aug 12  0.009  1188   Oct 17   0.01 0.000002
             Belgium_Liege  Sep 18   0.008   374   Oct  2  0.058    86   Nov  2   0.05 0.007186
       Denmark_Hovedstaden  Aug 10   0.017   936   Aug 24  0.383  2478   Nov  2   0.37 0.000000
       Denmark_Midtjylland  Sep  7   0.018   504   Sep 21  0.369   596   Nov  2   0.35 0.000000
       Denmark_Nordjylland  Aug 31   0.011   283   Sep 14  0.191   461   Nov  2   0.18 0.000000
         Denmark_Sjaelland  Aug 31   0.045   314   Sep 14  0.354   449   Nov  2   0.31 0.000000
        Denmark_Syddanmark  Aug 24   0.016   314   Sep  7  0.151   850   Nov  2   0.13 0.000000
 France_Auvergne-Rhone-Alpes  Sep 23   0.013   318   Oct  7  0.105    19   Nov  2   0.09 0.039497
 France_Provence-Alpes-Cote-d-Azur  Aug 12   0.006   505   Aug 26  0.146   171   Oct 26   0.14 0.000000
 Germany_North-Rhine-Westphalia  Sep 14   0.023   258   Sep 28  0.226    31   Oct  6   0.20 0.000091
            Ireland_Dublin  Aug  1   0.016   193   Aug 15  0.756    41   Oct 22   0.74 0.000000
    Netherlands_Gelderland  Sep 19   0.011   274   Oct  3  0.353    34   Oct 27   0.34 0.000000
       Netherlands_Utrecht  Aug 25   0.020   148   Sep  8  0.396    53   Oct 23   0.38 0.000000
  Netherlands_Zuid-Holland  Aug 24   0.012   407   Sep  7  0.244   311   Oct 30   0.23 0.000000
      New-Zealand_Auckland  Oct  6   0.029   103   Oct 20  0.167    18   Nov  8   0.14 0.041965
      Spain_Basque-Country  Jun 29   0.014   216   Jul 13  0.868    53   Sep 20   0.85 0.000000
    Switzerland_Basel-Land  Aug  4   0.012   255   Aug 18  0.228    92   Oct 16   0.22 0.000000
 Switzerland_Basel-Landschaft  Aug  4   0.023   131   Aug 18  0.228    92   Oct 16   0.21 0.000001
   Switzerland_Basel-Stadt  Aug  9   0.008   370   Aug 23  0.143    21   Oct 18   0.13 0.002419
          Switzerland_Bern  Aug 22   0.025   203   Sep  5  0.228   145   Oct 22   0.20 0.000000
        Switzerland_Valais  Sep 10   0.143    28   Sep 24  0.464    28   Oct 22   0.32 0.018635
          Switzerland_Vaud  Aug 18   0.033    91   Sep  1  0.383   206   Oct 22   0.35 0.000000
        Switzerland_Zurich  Aug 17   0.014   218   Aug 31  0.308   104   Oct 22   0.29 0.000000
             USA_Minnesota  May  1   0.003   895   May 15  0.023   512   Oct 29   0.02 0.000679
                UK_England  Mar 31   0.001  5961   Apr 14  0.325 48962   Nov 29   0.32 0.000000
           UK_England_ALDP  Jun 17   0.001  2933   Jul  1  0.516  9506   Oct 22   0.52 0.000000
           UK_England_BIRM  Aug 30   0.013   223   Sep 13  0.511    88   Oct 12   0.50 0.000000
      UK_England_Cambridge  Aug  6   0.001  4953   Aug 20  0.362   287   Oct 26   0.36 0.000000
           UK_England_CAMC  Jul 21   0.012   250   Aug  4  0.569  3304   Oct 31   0.56 0.000000
         UK_England_Exeter  Sep 10   0.020   248   Sep 24  0.341    44   Oct 21   0.32 0.000000
         UK_England_London  Sep 24   0.004   904   Oct  8  0.612    49   Oct 28   0.61 0.000000
           UK_England_MILK  Jul 16   0.004   935   Jul 30  0.428  8453   Oct 27   0.42 0.000000
    UK_England_Northampton  Aug 27   0.002  1454   Sep 10  0.241   166   Nov 10   0.24 0.000000
     UK_England_Nottingham  Sep  1   0.003   867   Sep 15  0.843   439   Nov 10   0.84 0.000000
     UK_England_Portsmouth  Sep 16   0.012   335   Sep 30  0.717    53   Oct 28   0.71 0.000000
           UK_England_QEUH  Aug  2   0.007   841   Aug 16  0.447  9665   Nov  5   0.44 0.000000
      UK_England_Sheffield  Sep  1   0.002  1222   Sep 15  0.532   265   Oct 30   0.53 0.000000
       UK_Northern-Ireland  Jul 26   0.005   830   Aug  9  0.143   502   Oct 16   0.14 0.000000
               UK_Scotland  Aug  4   0.001  4165   Aug 18  0.651  3445   Oct 27   0.65 0.000000
                  UK_Wales  Aug 11   0.001  4898   Aug 25  0.759  4150   Nov  3   0.76 0.000000

 

last modified: Mon Nov 2 09:08 2020



GISAID data provided on this website is subject to GISAID's Terms and Conditions

Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health