COVID-19 Viral Genome Analysis Pipeline
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Relative Frequency Change By Geographical Region
Last update: Nov 22, 2020
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Continent
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date V/(V+A) V+A Date V/(V+A) V+A Sample V/(V+A) p-val
Asia Aug 10 0.000 8714 Aug 24 0.011 565 Nov 9 0.01 0.000008
Europe Mar 21 0.000 7639 Apr 4 0.284 85629 Nov 29 0.28 0.000000
North-America Mar 24 0.000 8091 Apr 7 0.002 22240 Oct 29 0.00 0.000497
Oceania Jul 29 0.001 7184 Aug 12 0.019 1659 Nov 10 0.02 0.000000
Country
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date V/(V+A) V+A Date V/(V+A) V+A Sample V/(V+A) p-val
Australia Jul 29 0.001 6817 Aug 12 0.012 1517 Nov 2 0.01 0.000000
Belgium Jul 29 0.003 900 Aug 12 0.048 187 Nov 2 0.04 0.000015
Denmark Aug 10 0.008 2523 Aug 24 0.293 5721 Nov 6 0.29 0.000000
France Aug 1 0.003 1141 Aug 15 0.134 359 Nov 2 0.13 0.000000
Germany Sep 14 0.012 510 Sep 28 0.226 31 Oct 6 0.21 0.000001
Ireland Aug 1 0.010 290 Aug 15 0.527 188 Oct 22 0.52 0.000000
Netherlands Aug 9 0.001 2133 Aug 23 0.245 613 Oct 30 0.24 0.000000
New-Zealand Oct 2 0.007 454 Oct 16 0.098 41 Nov 10 0.09 0.001190
Norway Jul 31 0.029 173 Aug 14 0.085 258 Oct 30 0.06 0.024074
Spain Mar 24 0.004 726 Apr 7 0.238 369 Sep 20 0.23 0.000000
Sweden Aug 27 0.004 771 Sep 10 0.235 17 Sep 27 0.23 0.000005
Switzerland Jul 30 0.003 1313 Aug 13 0.337 999 Oct 22 0.33 0.000000
USA Apr 20 0.000 14827 May 4 0.002 16020 Oct 29 0.00 0.000012
UK Mar 31 0.000 8346 Apr 14 0.345 62402 Nov 29 0.34 0.000000
Subcountry
Onset |--Before-| Delay |--After--| Last Delta Fisher
Location Date V/(V+A) V+A Date V/(V+A) V+A Sample V/(V+A) p-val
Australia_Victoria Jul 29 0.001 5184 Aug 12 0.009 1188 Oct 17 0.01 0.000002
Belgium_Liege Sep 18 0.008 374 Oct 2 0.058 86 Nov 2 0.05 0.007186
Denmark_Hovedstaden Aug 10 0.017 936 Aug 24 0.383 2478 Nov 2 0.37 0.000000
Denmark_Midtjylland Sep 7 0.018 504 Sep 21 0.369 596 Nov 2 0.35 0.000000
Denmark_Nordjylland Aug 31 0.011 283 Sep 14 0.191 461 Nov 2 0.18 0.000000
Denmark_Sjaelland Aug 31 0.045 314 Sep 14 0.354 449 Nov 2 0.31 0.000000
Denmark_Syddanmark Aug 24 0.016 314 Sep 7 0.151 850 Nov 2 0.13 0.000000
France_Auvergne-Rhone-Alpes Sep 23 0.013 318 Oct 7 0.105 19 Nov 2 0.09 0.039497
France_Provence-Alpes-Cote-d-Azur Aug 12 0.006 505 Aug 26 0.146 171 Oct 26 0.14 0.000000
Germany_North-Rhine-Westphalia Sep 14 0.023 258 Sep 28 0.226 31 Oct 6 0.20 0.000091
Ireland_Dublin Aug 1 0.016 193 Aug 15 0.756 41 Oct 22 0.74 0.000000
Netherlands_Gelderland Sep 19 0.011 274 Oct 3 0.353 34 Oct 27 0.34 0.000000
Netherlands_Utrecht Aug 25 0.020 148 Sep 8 0.396 53 Oct 23 0.38 0.000000
Netherlands_Zuid-Holland Aug 24 0.012 407 Sep 7 0.244 311 Oct 30 0.23 0.000000
New-Zealand_Auckland Oct 6 0.029 103 Oct 20 0.167 18 Nov 8 0.14 0.041965
Spain_Basque-Country Jun 29 0.014 216 Jul 13 0.868 53 Sep 20 0.85 0.000000
Switzerland_Basel-Land Aug 4 0.012 255 Aug 18 0.228 92 Oct 16 0.22 0.000000
Switzerland_Basel-Landschaft Aug 4 0.023 131 Aug 18 0.228 92 Oct 16 0.21 0.000001
Switzerland_Basel-Stadt Aug 9 0.008 370 Aug 23 0.143 21 Oct 18 0.13 0.002419
Switzerland_Bern Aug 22 0.025 203 Sep 5 0.228 145 Oct 22 0.20 0.000000
Switzerland_Valais Sep 10 0.143 28 Sep 24 0.464 28 Oct 22 0.32 0.018635
Switzerland_Vaud Aug 18 0.033 91 Sep 1 0.383 206 Oct 22 0.35 0.000000
Switzerland_Zurich Aug 17 0.014 218 Aug 31 0.308 104 Oct 22 0.29 0.000000
USA_Minnesota May 1 0.003 895 May 15 0.023 512 Oct 29 0.02 0.000679
UK_England Mar 31 0.001 5961 Apr 14 0.325 48962 Nov 29 0.32 0.000000
UK_England_ALDP Jun 17 0.001 2933 Jul 1 0.516 9506 Oct 22 0.52 0.000000
UK_England_BIRM Aug 30 0.013 223 Sep 13 0.511 88 Oct 12 0.50 0.000000
UK_England_Cambridge Aug 6 0.001 4953 Aug 20 0.362 287 Oct 26 0.36 0.000000
UK_England_CAMC Jul 21 0.012 250 Aug 4 0.569 3304 Oct 31 0.56 0.000000
UK_England_Exeter Sep 10 0.020 248 Sep 24 0.341 44 Oct 21 0.32 0.000000
UK_England_London Sep 24 0.004 904 Oct 8 0.612 49 Oct 28 0.61 0.000000
UK_England_MILK Jul 16 0.004 935 Jul 30 0.428 8453 Oct 27 0.42 0.000000
UK_England_Northampton Aug 27 0.002 1454 Sep 10 0.241 166 Nov 10 0.24 0.000000
UK_England_Nottingham Sep 1 0.003 867 Sep 15 0.843 439 Nov 10 0.84 0.000000
UK_England_Portsmouth Sep 16 0.012 335 Sep 30 0.717 53 Oct 28 0.71 0.000000
UK_England_QEUH Aug 2 0.007 841 Aug 16 0.447 9665 Nov 5 0.44 0.000000
UK_England_Sheffield Sep 1 0.002 1222 Sep 15 0.532 265 Oct 30 0.53 0.000000
UK_Northern-Ireland Jul 26 0.005 830 Aug 9 0.143 502 Oct 16 0.14 0.000000
UK_Scotland Aug 4 0.001 4165 Aug 18 0.651 3445 Oct 27 0.65 0.000000
UK_Wales Aug 11 0.001 4898 Aug 25 0.759 4150 Nov 3 0.76 0.000000
last modified: Mon Nov 2 09:08 2020
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