COVID-19 Viral Genome Analysis Pipeline COVID-19 Viral Genome Analysis Pipeline home COVID-19 Viral Genome Analysis Pipeline home
COVID-19 Viral Genome Analysis Pipeline
Enabled by data from   gisaid-logo
Home
Site Map
Variants
Curated Variants WHO VOI/VOC reference strains
Resources
Embers hCov-19 variants Distribution Map Most common forms
based on Pango lineage designations SHIVER Tables of Mutating Sites:
Amino acid Frequencies and Entropy XSpike Variant Color Keys Symbols in Sequences
Tools
AnalyzeAlign Geographically Restricted Embers Geographically Restricted Pango
common forms Geographically Restricted SHIVER Geographically Restricted XSpike Isotonic Regression Relative Frequency Change
By Geographical Region Sequence Locator Tables of Mutating Sites:
Amino acid Frequencies and Entropy Tracking Mutations Variant Visualizer External tools


Table of mutating sites in Genome

Last update: Dec 31, 1969

Dates of current data


Table 2. All positions in genome are listed, with the frequencies of variant forms in position, the entropy of each position, and the local regional entropy of spanning 10 continuous amino acid segments, to highlight nearby regions of variation.

LANL COMPLETE genome alignment used

Download  


Table 2. Per-site variation

Reference sequence: Wuhan-Hu-1 NC_045512





 

last modified: Thu Apr 21 17:07 2022



GISAID data provided on this website is subject to GISAID's Terms and Conditions
Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy
Dept of Health & Human Services Los Alamos National Institutes of Health