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COVID-19 Viral Genome Analysis Pipeline
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Spike Variants
Curated Variants (.xlsx) Curated Variants Description (.pdf) Notes on Specific Variants (.pdf) Archive
Resources
Common Forms Of Spike
With Pango Lineage Designation Embers hCov-19 variants Distribution Map SHIVER Tables of Mutating Sites XSpike Variation Summary
Tools
AnalyzeAlign Geographically Restricted Embers Geographically Restricted SHIVER Geographically Restricted XSpike Isotonic Regression Relative Frequency Change
By Geographical Region Sequence Locator Tables of Mutating Sites Tracking Mutations Variant Visualizer External tools


Current data shared through GISAID

 

The analyses provided are based on a Spike alignment containing 4,117,416 sequences downloaded on Nov 30, 2021 and a trimmed full length SARS-CoV-2 alignment containing 2,275,672 sequences on Oct 14, 2021.

Current GISAID data for spike-only analyses
Current GISAID data for full-length analyses

 

last modified: Wed Nov 17 19:10 2021



GISAID data provided on this website is subject to GISAID's Terms and Conditions
Questions or comments? Contact us at seq-info@lanl.gov.

 
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