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COVID-19 Viral Genome Analysis Pipeline
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Spike Variants
Curated Variants (.xlsx) Curated Variants Description (.pdf) Notes on Specific Variants (.pdf) Archive
Resources
Embers Most common forms
based on Pango lineage designations hCov-19 variants Distribution Map SHIVER Tables of Mutating Sites XSpike Variation Summary
Tools
AnalyzeAlign Geographically Restricted Embers Geographically Restricted Pango
common forms Geographically Restricted SHIVER Geographically Restricted XSpike Isotonic Regression Relative Frequency Change
By Geographical Region Sequence Locator Tables of Mutating Sites Tracking Mutations Variant Visualizer External tools


Current data shared through GISAID

 

DataDate on GISAID
MetadataMay 22, 2022
EnvelopeMay 10, 2022
MembraneMay 6, 2022
Nsp3Apr 29, 2022
NucleocapsidApr 29, 2022
Orf3aMay 6, 2022
Orf8Apr 6, 2022
Protease3cMay 6, 2022
RdrpMay 6, 2022
SpikeMay 17, 2022
Complete genomeMar 5, 2022
Full genomeOct 14, 2021
Nearcomp genomeNov 16, 2021

 

last modified: Wed Apr 27 09:23 2022



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